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Relevant bibliographies by topics / DArTseq analysis

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Academic literature on the topic 'DArTseq analysis'

Author: Grafiati

Published: 7 June 2025

Last updated: 2 August 2025

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Journal articles on the topic "DArTseq analysis"

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Melville, Jane, Margaret L. Haines, Katja Boysen, et al. "Identifying hybridization and admixture using SNPs: application of the DArTseq platform in phylogeographic research on vertebrates." Royal Society Open Science 4, no. 7 (2017): 161061. http://dx.doi.org/10.1098/rsos.161061.

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Next-generation sequencing (NGS) approaches are increasingly being used to generate multi-locus data for phylogeographic and evolutionary genetics research. We detail the applicability of a restriction enzyme-mediated genome complexity reduction approach with subsequent NGS (DArTseq) in vertebrate study systems at different evolutionary and geographical scales. We present two case studies using SNP data from the DArTseq molecular marker platform. First, we used DArTseq in a large phylogeographic study of the agamid lizard Ctenophorus caudicinctus , including 91 individuals and spanning the geo

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Dikane, Goitsemang Mahlomola Hendry, and Moosa Mahmood Sedibe. "Genetic Heterogeneity in Cowpea Genotypes (Vigna unguiculata L. Walp) Using DArTseq (GBS)-Derived Single Nucleotide Polymorphisms." Genes 15, no. 6 (2024): 764. http://dx.doi.org/10.3390/genes15060764.

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Cowpeas (Vigna unguiculata L. Walp) have been credible constituents of nutritious food and forage in human and animal diets since the Neolithic era. The modern technique of Diversity Array Technology (DArTseq) is both cost-effective and rapid in producing thousands of high-throughputs, genotyped, single nucleotide polymorphisms (SNPs) in wide-genomic analyses of genetic diversity. The aim of this study was to assess the heterogeneity in cowpea genotypes using DArTseq-derived SNPs. A total of 92 cowpea genotypes were selected, and their fourteen-day-old leaves were freeze-dried for five days. D

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Sserumaga, Julius Pyton, Siraj Ismail Kayondo, Abasi Kigozi, et al. "Genome-wide diversity and structure variation among lablab [Lablab purpureus (L.) Sweet] accessions and their implication in a Forage breeding program." Genetic Resources and Crop Evolution 68, no. 7 (2021): 2997–3010. http://dx.doi.org/10.1007/s10722-021-01171-y.

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AbstractMost orphan crops have not been fully sequenced, hence we rely on genome sequences of related species to align markers to different chromosomes. This hinders their utilisation in plant population improvement programs. Utilising the advances in the science of sequencing technologies, the population structure, relatedness, and genetic diversity among accessions can be assessed quickly for better exploitation in forage breeding programs. Using DArTseq technology, we studied the genetic and structural variation in 65 Lablab purpureus (L.) Sweet conserved gene-bank accessions using 9320 DAr

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Mengistu, Girma, Hussein Shimelis, Ermias Assefa, and Dagnachew Lule. "Genome-wide association analysis of anthracnose resistance in sorghum [Sorghum bicolor (L.) Moench]." PLOS ONE 16, no. 12 (2021): e0261461. http://dx.doi.org/10.1371/journal.pone.0261461.

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In warm-humid ago-ecologies of the world, sorghum [Sorghum bicolor (L.) Moench] production is severely affected by anthracnose disease caused by Colletotrichum sublineolum Henn. New sources of anthracnose resistance should be identified to introgress novel genes into susceptible varieties in resistance breeding programs. The objective of this study was to determine genome-wide association of Diversity Arrays Technology Sequencing (DArTseq) based single nucleotide polymorphisms (SNP) markers and anthracnose resistance genes in diverse sorghum populations for resistance breeding. Three hundred s

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Mbanjo, Edwige Gaby Nkouaya, Adebukola Ogungbesan, Afolabi Agbona, et al. "Validation of SNP Markers for Diversity Analysis, Quality Control, and Trait Selection in a Biofortified Cassava Population." Plants 13, no. 16 (2024): 2328. http://dx.doi.org/10.3390/plants13162328.

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A validated marker system is crucial to running an effective genomics-assisted breeding program. We used 36 Kompetitive Allele-Specific PCR (KASP) markers to genotype 376 clones from the biofortified cassava pipeline, and fingerprinted 93 of these clones with DArTseq markers to characterize breeding materials and evaluate their relationships. The discriminating ability of the 36-quality control (QC) KASP and 6602 DArTseq markers was assessed using 92 clones genotyped in both assays. In addition, trait-specific markers were used to determine the presence or absence of target genomic regions. Hi

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Nadeem, Muhammad Azhar, Müttalip Gündoğdu, Sezai Ercişli, et al. "Uncovering Phenotypic Diversity and DArTseq Marker Loci Associated with Antioxidant Activity in Common Bean." Genes 11, no. 1 (2019): 36. http://dx.doi.org/10.3390/genes11010036.

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Antioxidants play an important role in animal and plant life owing to their involvement in complex metabolic and signaling mechanisms, hence uncovering the genetic basis associated with antioxidant activity is very important for the development of improved varieties. Here, a total of 182 common bean (Phaseolus vulgaris) landraces and six commercial cultivars collected from 19 provinces of Turkey were evaluated for seed antioxidant activity under four environments and two locations. Antioxidant activity was measured using ABTS radical scavenging capacity and mean antioxidant activity in common

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Robbana, Cyrine, Zakaria Kehel, M’barek Ben Naceur, Carolina Sansaloni, Filippo Bassi, and Ahmed Amri. "Genome-Wide Genetic Diversity and Population Structure of Tunisian Durum Wheat Landraces Based on DArTseq Technology." International Journal of Molecular Sciences 20, no. 6 (2019): 1352. http://dx.doi.org/10.3390/ijms20061352.

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Tunisia, being part of the secondary center of diversity for durum wheat, has rich unexploited landraces that are being continuously lost and replaced by high yielding modern cultivars. This study aimed to investigate the genetic diversity and population structure of 196 durum wheat lines issued from landraces collected from Tunisia using Diversity Array Technology sequencing (DArTseq) and to understand possible ways of introduction in comparing them to landraces from surrounding countries. A total of 16,148 polymorphic DArTseq markers covering equally the A and B genomes were effective to ass

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Fufa, Tilahun Wondimu, Wosene Gebreselassie Abtew, Charles Okechukwu Amadi, and Happiness Ogba Oselebe. "DArTSeq SNP-based genetic diversity and population structure studies among taro [(Colocasia esculenta (L.) Schott] accessions sourced from Nigeria and Vanuatu." PLOS ONE 17, no. 11 (2022): e0269302. http://dx.doi.org/10.1371/journal.pone.0269302.

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Taro is a valuable staple food crop among resource-poor rural people in countries such as Nigeria and Ghana, among others. Characterization of genetic diversity is a prerequisite for proper management of breeding programs and conservation of genetic resources. Two hundred seventy one taro accessions obtained from Nigeria and Vanuatu were genotyped using DArTseq-based SNP markers with the objectives of investigating the genetic diversity and population structure. In the analysis, 10,391 SNP markers were filtered from the sequence and used. The analysis revealed higher transition than transversi

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Mokrzycka, Monika, Stefan Stojałowski, Mirosław Tyrka, et al. "Genome-Wide Association Analysis for Hybrid Breeding in Wheat." International Journal of Molecular Sciences 23, no. 23 (2022): 15321. http://dx.doi.org/10.3390/ijms232315321.

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Disclosure of markers that are significantly associated with plant traits can help develop new varieties with desirable properties. This study determined the genome-wide associations based on DArTseq markers for six agronomic traits assessed in eight environments for wheat. Moreover, the association study for heterosis and analysis of the effects of markers grouped by linkage disequilibrium were performed based on mean values over all experiments. All results were validated using data from post-registration trials. GWAS revealed 1273 single nucleotide polymorphisms with biologically significan

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Kozak, Bartosz, Renata Galek, Dariusz Zalewski, and Ewa Sawicka-Sienkiewicz. "Preliminary Genetic Map of a New Recombinant Inbred Line Population for Narrow-leafed Lupin (Lupinus angustifolius L.)." Agronomy 9, no. 10 (2019): 653. http://dx.doi.org/10.3390/agronomy9100653.

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Genetic maps are an essential tool for investigating molecular markers’ linkage with traits of agronomic importance. Breeders put a lot of emphasis on this type of markers, which are used in breeding programs implementation and speed up the process of a new variety development. In this paper, we construct a new, high-density linkage genetic map for Polish material on narrow-leafed lupin. The mapping population originated from crossing the Polish variety ‘Emir’ and the Belarusian breeding line ‘LAE-1’. A new map was constructed based on DArTseq markers—a new type of marker generated with the ne

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Dissertations / Theses on the topic "DArTseq analysis"

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Hartup, Wendi Winter. "Assessing persistence of two rare darter species using population viability analysis models." Auburn, Ala., 2005. http://repo.lib.auburn.edu/2005%20Summer/master's/HARTUP_WENDI_17.pdf.

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Gallivan, Michael Timothy. "An analysis of trajectory control strategies in a goal oriented throwing task /." Thesis, McGill University, 1987. http://digitool.Library.McGill.CA:80/R/?func=dbin-jump-full&object_id=63949.

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Fredriksson, Felicia. "Analysis of Per- and Polyfluoroalkyl Substances (PFASs) in African Darter (Anhinga rufa) Eggs along Vaal River, South Africa : Comparison of Homologue and Isomer Profiles." Thesis, Örebro universitet, Institutionen för naturvetenskap och teknik, 2016. http://urn.kb.se/resolve?urn=urn:nbn:se:oru:diva-51772.

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Per- and polyfluoroalkyl substances (PFASs) are a group of toxic and persistent organic compounds. Their properties make them extremely resistant and they have been shown to have bioaccumulation and toxic properties in the environment and also to biomagnify in both aquatic and terrestrial food webs. This study has analysed different PFASs in African Darter (Anhinga rufa) eggs from five sites along Vaal River; Orange River, South Africa. Sixteen of 23 analysed PFASs were detected and quantified, and the homologue profiles were studied from all five sites. Total perfluorooctane sulfonic acid (PF

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Steffens, David Martyn. "Identification and Development of a Model of Railway Track Dynamic Behaviour." Thesis, Queensland University of Technology, 2005. https://eprints.qut.edu.au/16029/1/David_Steffens_Thesis.pdf.

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The research presented in this thesis has identified and developed a sophisticated computer model for the analysis of railway track dynamic behaviour to be used by the Rail Cooperative Research Centre for Railway Engineering and Technologies (Rail CRC) in Australia. To be competitive railway track owners need to extract as much performance as possible from their asset without serviceability or catastrophic failure. Railway track designers therefore need to develop more knowledge of the static and dynamic loadings that track may be subjected to in its lifetime. This would be best undertaken

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Steffens, David Martyn. "Identification and Development of a Model of Railway Track Dynamic Behaviour." Queensland University of Technology, 2005. http://eprints.qut.edu.au/16029/.

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The research presented in this thesis has identified and developed a sophisticated computer model for the analysis of railway track dynamic behaviour to be used by the Rail Cooperative Research Centre for Railway Engineering and Technologies (Rail CRC) in Australia. To be competitive railway track owners need to extract as much performance as possible from their asset without serviceability or catastrophic failure. Railway track designers therefore need to develop more knowledge of the static and dynamic loadings that track may be subjected to in its lifetime. This would be best undertaken

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Brown, Carolyn J. M. "Fish communities near municipal wastewater discharges in the Grand River watershed." Thesis, 2010. http://hdl.handle.net/10012/5190.

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Municipal wastewater effluent (MWWE) has the potential for aquatic degradation, as it is the largest, per volume, anthropogenic discharge in Canada and other areas in the world. With an increasing population in many areas, such as Southern Ontario, there is concern that infrastructure of wastewater treatment facilities will not be able to maintain adequate treatment and prevent further degradation of the environment. The Grand River watershed, in Southern Ontario, is predicted to have its population increase to 1.2 million people by 2031 (from 780,000 people in 2001). Although wastewater treat

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Finch, Mary. "Life history and population dynamics of Eastern Sand Darter (Ammocrypta pellucida) in the lower Thames River, Ontario." Thesis, 2009. http://hdl.handle.net/10012/4475.

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Eastern Sand Darter (Ammocrypta pellucida) is listed as Threatened under the Canadian Species at Risk Act. Canadian populations are declining primarily due to the siltation of sandy depositional areas, the preferred habitat of the species. Little other relevant biological information is available for most Canadian populations and only limited information is available for populations in the United States. To supplement the paucity of information, this study collected biological information on A. pellucida during field surveys in 2006- 2007 from 10 sites located around the Big Bend Conservatio

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Stephenson, S. A. "An analysis of meristic, morphometric and biochemical variation in the johnny darter, Etheostoma nigrum Rafinesque, in the northern United States and Canada with biogeographic and systematic considerations." 1996. http://hdl.handle.net/1993/19299.

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Books on the topic "DArTseq analysis"

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Proebstel, Don S. Taxonomic status of cutthroat trout, Rio Grande suckers, and Arkansas darters: Determined through morphometric, meristic, and mitochondrial DNA analysis. s.n., 1996.

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Polillo, Simone. The Ascent of Market Efficiency. Cornell University Press, 2020. http://dx.doi.org/10.7591/cornell/9781501750373.001.0001.

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This book weaves together historical narrative and quantitative bibliometric data to detail the path financial economists took in order to form one of the central theories of financial economics—the influential efficient-market hypothesis—which states that the behavior of financial markets is unpredictable. As the notorious quip goes, a blindfolded monkey would do better than a group of experts in selecting a portfolio of securities, simply by throwing darts at the financial pages of a newspaper. How did such a hypothesis come to be so influential in the field of financial economics? How did f

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Book chapters on the topic "DArTseq analysis"

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Lacharme, Guillaume, Hubert Cardot, Christophe Lenté, and Nicolas Monmarché. "DARTS with Degeneracy Correction." In Pattern Recognition and Image Analysis. Springer Nature Switzerland, 2023. http://dx.doi.org/10.1007/978-3-031-36616-1_4.

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Jain, Abhinandan. "DARTS - Multibody Modeling, Simulation and Analysis Software." In Multibody Dynamics 2019. Springer International Publishing, 2019. http://dx.doi.org/10.1007/978-3-030-23132-3_52.

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Yamaguchi, Hiroshi, and Toshiyuki Kondo. "Throwing Darts Training Support System Based on Analysis of Human Motor Skill." In Advances in Intelligent Systems and Computing. Springer Berlin Heidelberg, 2013. http://dx.doi.org/10.1007/978-3-642-33932-5_43.

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Mak Henry Ka-Fung, Zhang Zhipeng, Yau Kelvin Kai-Wing, Zhang Linda, Chan Queenie, and Chu Leung-Wing. "Discriminating Alzheimer's Patients from Cognitively Normal Older Adults Based on Hippocampal Volumes - Voxel-Based Morphometry with DARTEL and Standard Registration Versus Manual Volumetry." In Advances in Alzheimer’s Disease. IOS Press, 2011. https://doi.org/10.3233/978-1-60750-793-2-729.

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Hippocampal atrophy on Magnetic Resonance Imaging (MRI) has been increasingly used as a supportive feature for the diagnosis of Alzheimer's patients. We attempt to compare voxel-based morphometry (VBM) with DARTEL and standard registration versus manual hippocampal volumetry in discriminating Alzheimer's disease (AD) patients from cognitively normal older adults. Participants were 20 cognitively normal elderly subjects and 19 AD patients who met the criteria of probable AD according to NINCDS-ADRDA. High resolution T1-weighted (T1W) 3D volumetric Fast Field Echo sequence was obtained using 3.0

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Ngai Yung Tsang, Nicole, Hau Chi So, and Dennis Kai Ming Ip. "Using large scale rapid antigen testing (RAT) to inform participatory ad-hoc community surveillance for emerging communicable diseases epidemics." In Rapid Antigen Testing [Working Title]. IntechOpen, 2023. http://dx.doi.org/10.5772/intechopen.1002337.

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Besides the diagnostic use for infectious diseases in a point-of-care clinical settings, the simplicity and ease of self-performed RAT can also be an alternative approach for informing disease surveillance at the community level, carrying the potential advantage of enhanced timeliness, acceptability, and flexibility. Commissioned by the Hong Kong Government during the catastrophic fifth wave of the COVID-19 pandemic, our team established and maintained an ad-hoc large-scale participatory daily antigen rapid testing surveillance (DARTS) system for real-time situational awareness of SARS-CoV-2 a

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"Landscape Influences on Stream Habitats and Biological Assemblages." In Landscape Influences on Stream Habitats and Biological Assemblages, edited by Brian M. Weigel, John Lyons, Paul W. Rasmussen, and Lizhu Wang. American Fisheries Society, 2006. http://dx.doi.org/10.47886/9781888569766.ch24.

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<em>Abstract.</em>—We analyzed data from 38 sites on 31 large rivers in Wisconsin to characterize the influence of environmental variables at the basin, reach, and site scales on fish assemblages. Electrofishing and site habitat data were collected for a distance of 1.6 km per site. Environmental variables included conductivity, substrate, and fish cover at the site scale; distance to impoundments, dams, and length of riverine habitat at the reach scale; and land cover, climate, and geology at the basin scale. Of the 77 fish species found, 39 occurred in more than 10% of the sites

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Conference papers on the topic "DArTseq analysis"

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Larrabide, Ignacio, Delfina Bragio, Lucia Alba Ferrara, Hernan Kulsgaard, and Mariana Bendersky. "A study of single subject VBM and DARTEL on healthy subjects." In 14th International Symposium on Medical Information Processing and Analysis, edited by Eduardo Romero, Natasha Lepore, and Jorge Brieva. SPIE, 2018. http://dx.doi.org/10.1117/12.2511457.

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Kumar, Rajesh, Suchita Pati, and Kanishka Lahiri. "DARTS: Performance-counter driven sampling using binary translators." In 2017 IEEE International Symposium on Performance Analysis of Systems and Software (ISPASS). IEEE, 2017. http://dx.doi.org/10.1109/ispass.2017.7975281.

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Hiraishi, Hironori. "Heart rate analysis for pre-performance routine in darts game." In 2020 IEEE 19th International Conference on Cognitive Informatics & Cognitive Computing (ICCI*CC). IEEE, 2020. http://dx.doi.org/10.1109/iccicc50026.2020.9450215.

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Hadjisotiriou, G., J. Sass, M. Wapperom, A. Novikov, and D. V. Voskov. "SPE11: Convergence Study and Extension to Realistic Physics." In SPE Reservoir Simulation Conference. SPE, 2025. https://doi.org/10.2118/223922-ms.

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Abstract The SPE11 comparative solution project presents a benchmark for geological carbon storage in an aquifer, as the development of sufficiently accurate CO2 sequestration models is critical for predicting the distribution of CO2 during and after injection. In this paper we present a convergence analysis of the SPE11 benchmark simulation using the Delft Advanced Research Terra Simulator (open-DARTS). Open-DARTS, an open-source simulation framework designed for forward and inverse modeling, as well as uncertainty quantification, employs a unified thermal-compositional formulation and operat

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de Hoop, Stephan, and Denis Voskov. "Fast and Robust Scheme for Uncertainty Quantification in Naturally Fractured Reservoirs." In SPE Reservoir Simulation Conference. SPE, 2021. http://dx.doi.org/10.2118/203968-ms.

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Abstract The main objective of this study is to perform Uncertainty Quantification (UQ) using a detailed representation of fractured reservoirs. This is achieved by creating a simplified representation of the fracture network while preserving the main characteristics of the high-fidelity model. We include information at different scales in the UQ workflow which allows for a large reduction in the computational time while converging to the high-fidelity full ensemble statistics. Ultimately, it allows us to make accurate predictions on geothermal energy production in highly heterogeneous fractur

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Reports on the topic "DArTseq analysis"

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Prentice, John K., and David Randall Gardner. An analysis of the survivability of sensor darts in impacts with trees. Office of Scientific and Technical Information (OSTI), 2005. http://dx.doi.org/10.2172/923170.

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Anderson, J. L. User guide for the Data Analysis, Retrieval, and Tabulation System (DARTS): A mainframe computer code for generating cross-tabulation reports. Office of Scientific and Technical Information (OSTI), 1988. http://dx.doi.org/10.2172/6200305.

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Anderson, J. User's guide for the Data Analysis, Retrieval, and Tabulation System (DARTS), revised edition: A mainframe computer code for generating cross-tabulation reports. Office of Scientific and Technical Information (OSTI), 1990. http://dx.doi.org/10.2172/6338482.

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