Tesi: "Intertidal organisms – South Africa"

1

Mostert, Bruce Petrus. "Responses of intertidal macroalgae and associated fauna to interactive processes acting over multiple spatial scales". Thesis, Rhodes University, 2010. http://hdl.handle.net/10962/d1013370.

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Abstract (sommario):

The decrease of biological diversity from low latitudes near the equator towards high latitudes is one of the most fundamental patterns noted in ecology. These trends have been the subject of numerous terrestrial and marine studies and have caused the proposal of several explanatory hypotheses. No single hypothesis has adequately accounted for these observed trends. Furthermore, large-scale patterns are frequently modified by processes acting at meso- to small-scales. It is imperative to understand the interaction of these processes to elucidate the mechanisms controlling the structure of intertidal assemblages. The main aim of this thesis was to test the influence of multiple processes at a range of spatial scales on biogenic engineers. Biogenic engineers, such as macroalgae, have been reported to be strongly influenced by processes such as grazing, biogeography and upwelling and subsequent effects are expected to be linked to their associated assemblages. I used infaunal assemblages associated with macroalgae as a model system to understand the interactive effects of meso-scale upwelling in conjunction with large-scale factors (regional and biogeographic). Three species of macroalgae, Hypnea spicifera, Champia lumbricalis and Bifurcaria brassicaeformis, inhabiting different but overlapping home ranges were used in this study. Smaller scale, physical attributes and the associated fauna of these algal species were compared. The effects of meso- to large-scale physical gradients on marine organisms have been investigated in many instances and resultant gradients in physical variables observed. This study was undertaken to investigate morphological trends exhibited by Hypnea spicifera and Champia lumbricalis to compare possible similarities between coastlines and to determine if inferred meso- to large-scale processes influence physical trends in a similar manner despite the coastlines being affected by different hydrodynamic processes. The macroalgae were located in two distinctly different upwelling regimes, Hypnea spicifera on the east and south coasts and Champia lumbricalis on the west coast. Upwelling (delivery of nutrients and primary production) was not found to be an important factor in determining the physical characteristics of macroalgae but there were clear patterns linked to latitude. Mean percentage cover of Hypnea spicifera was positively correlated with distance along the east and south coasts. Mean mass and mean surface area of H. spicifera were, however, negatively correlated with distance from Port St Johns. Mean frond length showed a negative trend but this relationship was not statistically significant. On the west coast, there was a significant increase in mean frond length from north to south for Champia lumbricalis. Mean surface area and mean mass of C. lumbricalis exhibited non-significant negative trends from north to south while there was a non-significant positive trend for mean percentage cover. Following the “Productivity Hypothesis”, these patterns from north to south along the coastlines of South Africa could have important implications for biodiversity associated with these algae. Many previous studies have focussed on the effects of upwelling on species (i.e. effects of nutrients and temperature) but have failed to separate this effect from large scale effects such as biogeography and latitudinal gradients. I tested the influence meso-scale upwelling, large-scale biogeographic processes and latitudinal gradients with two different species of macroalgae one on the east and south coasts of South Africa and the other on the west coast. Hypnea spicifera inhabits the east and south coasts of South Africa spanning two biogeographic provinces and is generally affected by relatively weak upwelling, whereas Champia lumbricalis inhabits the west coast spanning one biogeographic province which is subjected to intense persistent upwelling year round. Within the east and west coast biogeographic provinces there are, however, regions with both upwelling and non-upwelling. On the east and south coasts, entire assemblages differed significantly among the three Regions (St Lucia, Port Alfred and Knysna, while assemblages between upwelling/non-upwelling areas were not different. Assemblages on the different shores differed significantly from each other. There were no significant effects of region or upwelling for the number of individuals of Crustacea or Polychaeta, while Mollusca showed a significant effect of region. The number of individuals of other taxa showed a significant interaction of region and upwelling. Region had a significant effect on number of species of molluscs and other taxa, while there was no effect for either region or upwelling for the Crustacea or Polychaeta. In general different factors were shown to be important (region and shore) while upwelling was rarely important. On the west coast assemblages associated with C. lumbricalis were not influenced by region or upwelling but there were significant differences between shores. Region, upwelling ad shore did not affect number of individuals. There was a significant interaction of region and upwelling for the number of species of crustaceans, while numbers of species of Mollusca, Polychaeta and other taxa showed no effects. In general, regional factors strongly influenced most organisms, while upwelling played a minor role. Hypotheses about differences between upwelling and non-upwelling regions in terms of species abundances and composition due to the input of cold nutrient rich water were not supported. A link between the effects of larger-scale biogeographic factors and their influence on habitat forming taxa and the resultant effects on associated infauna would be a likely explanation for the patterns observed in this study. Diversity of assemblages is known to be influenced by the structural complexity of a habitat, increasing complexity increases the amount of available niches therefore potentially increasing the number of species found within that habitat. Three species of macroalgae, Hypnea spicifera, Champia lumbricalis and Bifurcaria brassicaeformis were selected on the basis of being structurally similar and having their distributional ranges overlap in order to elucidate the effects of structure and macroalgal species on associated assemblages. Hypnea spicifera is different in terms of surface area and biomass from Champia lumbricalis and Bifurcaria brassicaeformis. Assemblages of species found on the three rhodophytes showed both shore and the species of alga had significant effects on composition. Only numbers of individuals of molluscs were affected by the species of alga. Crustacea and Polychaeta showed an interaction of the species of alga with shore. In the case of this study, it is likely that the three species of macroalgae mitigate biological stressors such as predation and physical stressors such as wave exposure and desiccation. In general, meso-scale upwelling is suggested to be marginalised when considering the structuring of assemblages associated with macroalgae, while large scale biogeography has more of an influence. Within shores, assemblages were also strongly influenced by smaller-scale factors such as differences in the structure and species of alga. This study indicates the importance of investigating patterns across a range of spatial scales to gain a comprehensive understanding of factors influencing intertidal organisms.

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2

Ndhlovu, Rachel Tintswalo. "Temporal variability in the fatty acid composition of suspension-feeders and grazers on a South African rocky shore". Thesis, Rhodes University, 2014. http://hdl.handle.net/10962/d1020879.

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Abstract (sommario):

Numerous ecological studies have used lipids to determine trophic pathways in aquatic systems, as fatty acid profiles provide time-integrated information on an organism’s assimilated diet. Many of these studies have, however, been based on sample collections with a limited temporal scale. The trophic ecology of pelagic systems has been studied intensively using fatty acid analyses, but very little work has been directed toward benthic communities, with the intertidal being especially neglected. The investigation of trophic pathways within rocky shore communities will help us to better understand system responses to environmental changes. The determination of long term temporal variation of the food web within a community could reveal the type, magnitude, duration and frequency of highly seasonal productivity. Changes in fatty acid profiles through time in primary consumers of intertidal rocky shores are poorly understood, but represent an important step towards a more comprehensive understanding of rocky shore food webs, compared with those derived from snapshot or short-term studies. The aim of this thesis was to clarify the temporal variability in the diets of rocky shore intertidal suspension-feeders (the brown mussels Perna perna and the Cape reef worm, Gunnarea gaimardi) and grazers (the Cape sea urchin Parencinus angulosus and the Goat-eye limpet, Cymbulus oculus) on the south east coast of South Africa using fatty acid profiles, and to investigate the effects of life style (e.g. feeding mode) and life cycle on temporal variations in tissue fatty acid profiles. I had three hypotheses: firstly, that suspension-feeders experience high levels of variability in their diets through time because water quality has the potential to change quickly and drastically, whereas grazers experience less variability in their diets over time since their food sources are more constant. Secondly, the reproductive cycles of the suspension-feeder P. perna and the grazer P. angulosus affect the fatty acid composition of their gonads, with temporal variations in lipid composition reflecting changes in reproduction investment. Thirdly, the total amount of energetic reserves available for reproduction are different for each gender (females allocate more energy to egg production than males allocate to gamete production). To address these aims, fatty acid profiles of suspension-feeders and grazers were investigated over a period of twelve months (from July 2010 to June 2011) at a single site on the south east coast of South Africa. The results showed high variability in the fatty acid composition of both the suspension-feeders strongly related with changes in their food source (suspended particulate material). Furthermore, similar temporal changes in fatty acid profiles of the two suspension-feeders were observed over time, reflecting their common diet and life style. There were some inter-specific differences in the suspension-feeders, likely originating from differences in their particle capturing mechanisms. Grazers showed less variability through time compared with the suspension-feeders, with the limpets being more consistent than the sea urchins. The temporal variability in the sea urchin diets may have resulted from the highly diverse and heterogeneous food sources available to them, whereas limpets may be more selective and have a limited range of diet items. Differences between the two grazer species may have arose from differences in their feeding strategies and intertidal zonation. The fatty acid compositions of gonad tissues in both P. perna and P. angulosus showed temporal variability strongly related to reproductive cycle. Differences in the fatty acid values between females and males were apparent, with females richer in total and polyunsaturated fatty acids than males. Spawning and gametogenesis influenced the variability of fatty acids through time in both species, suggesting the importance of considering the reproductive cycle when studying lipids in rocky shore species. Little evidence of lipid transfer between muscles and gonads was seen, suggesting the importance of direct lipid storage into the reproductive tissues. The influence of diet and life history of intertidal consumers on the temporal variability of their fatty acid compositions is important to understand, as it provides us with a better understanding of the functioning of rocky shore systems. There is an enormous potential for future research in this field of study.

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3

Bownes, Sarah. "Habitat segregation in competing species of intertidal mussels in South Africa". Thesis, Rhodes University, 2006. http://hdl.handle.net/10962/d1005392.

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Abstract (sommario):

Mytilus galloprovincialis is invasive on rocky shores on the west coast of South Africa where it has become the dominant intertidal mussel. The success of this species on the west coast and its superior competitive abilities, have led to concern that it may become invasive on the south coast at the expense of the indigenous mussel Perna perna. On shores where these species co-occur, there appears to be habitat segregation among zones occupied by mussels. M.galloprovincialis dominates the high-shore and P.perna the low-shore, with a mixed zone at mid-shore level. This study examined the factors responsible for these differences in distribution and abundance. The study was conducted in Plettenberg Bay and Tsitsikamma (70km apart) on the south coast of South Africa. Each site included two randomly selected locations (300-400m apart). A third mussel species, Choromytilus meridionalis, is found in large numbers at the sand/rock interface at one location in Plettenberg Bay. Aspects of settlement, recruitment, growth and mortality of juvenile and adult mussels were examined at different tidal heights at each site. Quantitative analysis of mussel population structure at these sites supported the initial observation of vertical habitat segregation. Post-larvae were identified to species and this was confirmed using hinge morphology and mitochondrial DNA analysis. Size at settlement was determined for each species to differentiate between primary and secondary settlement. Adult distribution of C.meridionalis was primarily determined by settlement, which was highly selective in this species. Settlement, recruitment and growth of P.perna decreased with increasing tidal height, while post-settlement mortality and adult mortality increased higher upshore. Thus all aspects of P.perna’s life history contribute to the adult distribution of this species. Presumably, the abundance of P.perna on the high-shore is initially limited by recruitment while those that survive remain prone to elimination throughout adulthood. M.galloprovincialis displayed the same patterns of settlement and recruitment as P.perna. However, post-settlement mortality in this species was consistently low in the low and high zones. Juvenile growth also decreased upshore, suggesting that M.galloprovincialis may be able to maintain high densities on the high-shore through the persistence of successive settlements of slow-growing individuals. The low cover of M.galloprovincialis on the lowshore appeared to be determined by adult interactions. M.galloprovincialis experienced significantly higher adult mortality rates than P.perna in this zone. There were seasonal variations in the competitive advantages enjoyed by each species through growth, recruitment or mortality on the low-shore. In summer, P.perna had higher recruitment rates, faster growth and lower mortality rates, while M.galloprovincialis had slightly higher recruitment rates and faster growth rates in winter. P.perna is a warm water species while M.galloprovincialis thrives on the cold-temperate west coast of South Africa. Therefore both species appear to be at the edge of their optimal temperature regimes on the south coast, which may explain the seasonal advantages of each. Nevertheless, P.perna has maintained spatial dominance on the low-shore suggesting that it may ultimately be the winner in competition between these species. M.galloprovincialis appears to have a refuge from competition with P.perna on the high-shore due to its greater tolerance of desiccation stress, while being competitively excluded from the low-shore. Warm water temperatures coupled with poor recruitment rates at most sites may limit the success of M.galloprovincialis on this coast.

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4

Bosman, Alison L. "Avian determinants of rocky intertidal community structure in South Africa". Doctoral thesis, University of Cape Town, 1987. http://hdl.handle.net/11427/8407.

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Includes bibliographies.
Rocky islands in Saldanha Bay, southwestern Cape, South Africa, support aggregations of seabirds. Guano produced by the seabirds washed off the islands into intertidal and nearshore waters,where it provides a source of inorganic and organic nutrients. The concentrations of nutrients in intertidal rockpools at island and mainland sites in the Saldanha Bay area were measured,and the biological structures of intertidal communities at these sites were compared in the light of differences in intertidal nutrient status. Monthly measurements were made of algal production and of the growth, density, reproductive condition and mortality of the dominant intertidal herbivore, Patella granularis.The rate of intertidal algal production was enhanced on shores washed by nutrient-rich waters, and the growth rates and life-history patterns of populations of P. granularis were, in turn, modified by the increased availability of algal food. On unenriched shores rates of algal production and limpet growth and reproduction were slow. Seabirds thus influence trophic relationships between intertidal organisms, without themselves being components of the community. Islands in Saldanha Bay also support dense populations of African Black Oystercatchers Haematopus moqu.ini, which forage intertidally. Predation by oystercatchers on P. granular is resulted in a modification of limpet densities and population size structures, and a reduction in the intensity of grazing. The impact of predation was, however, modified by the presence, in intertidal waters, of nutrients from seabird guano, and the consequences thereof. It is proposed that differences in the structures of communities on rocky shores, and in the roles of processes influencing structure, might •be due, in part, to differences in the nutrient status of intertidal waters.

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5

Bownes, Sarah. "Habitat segregation in competing species of intertidal mussels in South Africa". Connect to this title online, 2005. http://eprints.ru.ac.za/238/.

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6

Zardi, G. I. "A genetic and ecophysiological comparison of co-occuring indigenous (Perna perna) and invasive (Mytilus galloprovincialis) intertidal mussels". Thesis, Rhodes University, 2006. http://hdl.handle.net/10962/d1003066.

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Abstract (sommario):

The Mediterranean mussel Mytilus galloprovincialis is the most successful marine invasive species in South Africa. Its presence has had significant ecological consequences on the intertidal communities of the west coast. On the south coast, M galloprovincialis co-exists and competes with the indigenous intertidal mussel Perna perna in the lower balanoid zone, where they show partial habitat segregation. The upper and the lower mussel zones are dominated by M. galloprovincialis and P. perna respectively while they co-occur in the mid zone. In this thesis M. galloprovincialis and P. perna are compared in terms of their population genetics and their ecophysiology. The success of an invader depends on its ability to react to new environmental factors, especially when compared to indigenous species. The distribution and diversity of intertidal species throughout the world are strongly influenced by periodic sand inundation and hydrodynamic stress. Occupying the lower intertidal zone, P. perna is more strongly influenced by sand (burial and sand in suspension) than M. galioprovincialis. Despite this, P. perna is more vulnerable to the effects of sand, showing higher mortality rates under experimental conditions in both the laboratory and the field. M. galioprovincialis has longer labial palps than P. perna, indicating a better ability to sort particles. This, and a higher tolerance to anoxia, explains its lower mortality rates when exposed to burial or suspended sand. Habitat segregation is often explained by physiological tolerances, but in this case, such explanations fail. The ability of a mussel to withstand wave-generated hydrodynamic stress depends mainly on its byssal attachment strength. The higher attachment strength of P. perna compared to M. galioprovincialis and of solitary mussels compared to mussels living within a bed (bed mussels) can be explained by more and thicker byssal threads. M galloprovincialis also has a wider shell, is subjected to higher hydrodynamic loads than P. perna and shows a higher theoretical probability of dislodgement, this is borne out under field conditions. The attachment strength of both species increased from higher to lower shore, in parallel to a gradient of a stronger wave action. Monthly measurements showed that P. perna is always more strongly attached than M. galloprovincialis and revealed seasonal fluctuations of attachment strength for both species in response to wave height. The gonad index of both species was negatively cross-correlated with attachment strength. The results are discussed in the context of the evolutionary strategy of the alien mussel, which directs most of its energy to fast growth and high reproductive output, apparently at the cost of reduced attachment strength. This raises the prediction that its invasive impact will be more pronounced at sites subjected to low or moderate wave action at heavily exposed sites. The potential of a species for invasion is also determined by the ability of the invader to disperse. Population genetics provide indirect information about dispersal through a direct measurement of gene flow. The low genetic divergence (measured as mtDNA) of M. galloprovincialis confirms its recent arrival in South Africa. In contrast, the population genetics structure of P. perna revealed strong divergence on the south-east coast, resulting in a western lineage (straddling the distributional gap of the Benguela System), and an eastern lineage, with an overlap region of the two on the south coast between Kenton-on-Sea and Haga Haga. This genetic disjunction may be caused by Agulhas Current acting as an oceanographic barrier to larval dispersal, or by different environmental selective forces acting on regional populations. Over the last ten years, M. galloprovincialis has shown a decrease or cessation of its spread to the east in exactly the region of the genetic disjunction in P. perna, again suggesting either an oceanographic barrier to larval dispersal, or increasing selection driven by sharp gradients in environmental conditions.

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7

Mmonwa, Lucas Kolobe. "Phylogeography and epifauna of two intertidal seaweeds on the coast of South Africa". Thesis, Rhodes University, 2009. http://eprints.ru.ac.za/1583/.

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8

Whittington-Jones, Kevin John. "Ecological interactions on a rocky shore : the control of macroalgal distribution by intertidal grazers". Thesis, Rhodes University, 1998. http://hdl.handle.net/10962/d1005350.

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The aim of the present study was to determine the potential impact of intertidal grazers on the distribution of macro algae on the south coast of South Africa. Particular attention was paid to the large patellid limpet, Patella oculus, which is found thoughout the intertidal zone. Studies of gut contents revealed that Patella oculus was capable of ingesting not only the thallus of foliose (eg. Ulva spp.) and encrusting coralline macroalgae, but also spores and diatoms. The inclusion of these relatively small particles in the diet was surprising, as electron micrographs of the radula of P.oculus revealed that it is typically docoglossan in structure. Such radulae are thought to be poorly suited for collecting small food particles. Sand made up a significantly higher proportion of the gut contents than other particles at all shore heights, which suggests that P.oculus might be capable of excavating the rocky substratum, or of sweeping up sand, while searching for food. Analysis of the gut contents of other local herbivorous molluscs, was also carried out. These species included the winkles, Oxystele variegata and O.sinensis, and the small pulmonate limpets, Siphonaria concinna, S.capensis, and S.serrata. The guts of all species contained mainly spores and diatoms, although small fragments of Ulva sp. were found. The population structure of Patella oculus was investigated at two sites, Cannon Rocks and Old Woman's River. At Cannon Rocks, mean shell length of low-shore animals was significantly lower than that of both mid- and high-shore animals, while at Old Woman's River, no significant difference was found among shore heights. A regression equation for In (shell length) vs In (dry weight) was calculated, and based on length data, the biomass density (g dry mass.m⁻²) of P.oculus at Old Woman's River was estimated. Values ranged from 2.8 on the low- and midshore to 0.37 on the high-shore. A manipulative field experiment was used to determine the impact of mesograzers and macrograzers (such as Patella oculus) on the distribution of intertidal macro algae on the mid- and low-shore at Old Woman's River. Grazers were excluded using mesh cages (mesh size = 3mm), in two separate experiments, one in winter and the other in spring. Percentage cover of macroalgal species and sessile invertebrates was estimated at approximately 6 week intervals for up to 3 months. MANOV A showed that treatments did not significantly affect cover of macroalgae or barnacles during winter. However, towards the end of the spring experiment (midshore only) cover of barnacles and green foliose turfs did increase in those plots from which mesograzers and/or macro grazers were excluded. The failure of the statistical tests to detect significant differences at some time intervals may have been caused by high levels of variation among replicates. This suggests that factors other than grazing are of overriding importance in determining the distribution of local macroalgae. The existence of a possible symbiotic relationship between Patella oculus and the red foliose alga, Gelidium pristoides, was investigated. The availability of various substratum types, including rock, limpet shells, barnacles etc., and the proportion of the total cover of G.pristoides on each, was calculated. It was shown that a significantly higher proportion of the alga grew on limpet shells, although the availability of this substratum type was low. It is thought that the aggressive behaviour of P.oculus prevents all but juvenile Patella longicosta from grazing on its shell, thus providing a refuge from grazing for G.pristoides.

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9

Innes, Sheona. "Tropical intertidal seaweed turf communities of Jesser Point, Sodwana Bay, South Africa". Bachelor's thesis, University of Cape Town, 2010. http://hdl.handle.net/11427/26378.

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Algal turfs play an important role in both tropical and temperate reef ecology, supporting a diverse array of macrofauna as well as being primary producers within both intertidal and subtidal ecosystems. Biodiversity and biomass patterns of the intertidal algal turfs at Sodwana Bay, South Africa have not yet been established so this study was undertaken to investigate these. It was hypothesised that both biodiversity and biomass would decrease with increasing height along the shore, as well as that sediment would have an effect on the community composition of the turfs. The community was sampled over a vertical range of 1.2 m and found to be dominated by the red alga Jania intermedia (24.21 % of total algal coverage) followed by Tolypiocladia glomerulata (18.05 %), Dictyota sp. (13.39 %), Jania adhaerens (12.32 %) and Sphacelaria tribuloides. (5.83 %). No significant vertical zonation patterns were found, though certain species showed vertical trends such as Asparagopsis taxiformis and Sphacelaria tribuloides, which occurred in greatest biomass lower down on the shore, while Tolypiocladia glomerulata occurred higher up on the shore. Sand was found to affect certain species more than others, with Tolypiocladia glomerulata, Jania adhaerens and Asparagopsis taxiformis occurring in greatest biomass when the amount of sediment found in the quadrat was low, while Sphacelaria tribuloides. showed the opposite pattern and Jania intermedia showed no distinct pattern. Sampling took place over 1.2 m vertical height along the shore at spring low tide therefore covering 60 % of the intertidal zone vertically (maximum tidal range in South Africa is 2 m). It is therefore possible that the turfs are the cause of a decline in zonation by remaining damp and decreasing desiccation gradients vertically along the shore.

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10

Gusha, Molline Natanah C. "A community–wide trophic structure analysis in intertidal ecosystems on the south coast of South Africa". Thesis, Rhodes University, 2018. http://hdl.handle.net/10962/63312.

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Coastal ecosystems are more than microhabitats for marine species. Acting as atmospheric carbon filters, species in coastal environments are directly and/or indirectly associated with transferring organic carbon to species at higher trophic levels. However, the progressing change in global climatic conditions has created the need to assess the consequences of the shifting conditions on both direct and indirect interactions of physical and biological parameters at species and/or community levels. From these perturbations, the effects of biotic homogenization on ecosystem functioning and resilience can also be realised. Herein, I discuss the effects of temperature, nutrients, biotic interactions and habitat characteristics on community dynamics within intertidal rock pool systems on the south coast of South Africa using complementary qualitative and quantitative analytical methods. Seasonality had a significant impact on rock pool species with changes in composition and higher richness in winter than summer. The first two axes of the Canonical Correspondence Analysis (CCA) of the plant and animal communities each explained ~20% of the relationship between physico-chemical parameters and biological variables. The CCA highlighted that seasonal shifts in chlorophyll-a, conductivity, salinity, water depth, surface area and substratum type indirectly influenced species composition. For example, pools with heterogenous substratum comprising a mixture of sand and rock exhibited higher species diversity than homogenously bedded pools. Furthermore, a Bayesian analysis of community structure based on stable isotope ratios was used to assess how trophic pathways of carbon and nitrogen elements reflected community composition and richness. Isotopic biplots showed an increase in food web size, food chain length and the trophic positions of fish and some gastropods in winter compared to summer. There was greater dietary overlap among species in larger pools. In addition, while isotopic nearest neighbour distance and species evenness also showed a positive increase with pool size in summer, the same metrics were almost constant across all pool sizes in winter. These changes in food web packing and species evenness suggest seasonal preferences or migration of species in summer from small pools to larger pools with stable physico-chemical parameters. Furthermore, the presence of fish was seen to promote trophic diversity within some pools. The results from laboratory microcosm grazing experiments demonstrated significant direct and indirect effects of temperature and nutrients within plankton communities. Copepod grazing had an indirect positive influence on phytoplankton biomass and size structure while the interactive effects of temperature and nutrients had contrasting effects on both phytoplankton communities and copepod biomass. Shifts in water chemistry and nutrient treatments were also observed in the presence of copepods. Phosphate addition had a recognisable impact on plankton communities. The presented synthesis of the literature mainly highlighted that positive effects at one trophic level do not always positively cascade into the next trophic level which is evidence of complex interactive biotic, habitat and water chemistry effects within these intertidal ecosystems. Thus, to further understand cascading effects or community structure functioning in general, there may be a need to incorporate and understand species functional traits and how they contribute to trophic diversity, community restructuring and functioning in coastal habitats.

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11

Watt-Pringle, Peter Andrew. "Movement bahaviour of three South African inshore sparid species in rocky intertidal and shallow subtidal habitats". Thesis, Rhodes University, 2009. http://hdl.handle.net/10962/d1005147.

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This study investigated the movement behaviour of three inshore South African sparids – blacktail (Diplodus sargus capensis), zebra (Diplodus cervinus hottentotus) and white musselcracker (Sparodon durbanensis), popular inshore fishery species caught in appreciable numbers along much of the South African coast. The first study component examined movements of juveniles in a rocky intertidal nursery area at Schoenmakerskop near Port Elizabeth. Juveniles in a single gully were tagged with Visible Implant Elastomer (VIE) and resighted at the study site on snorkelling gear over a seven-month period. Tagged zebra and musselcracker displayed limited movement between potential low tide refuges, being observed repeatedly in the same gully over the full duration of the study. However, blacktail displayed greater movements and were seen infrequently in the later period of the study, probably having undergone an ontogenetic habitat shift to subtidal areas. There was evidence that blacktail maintain use of their intertidal nursery over high tide, during which the other two species moved into shallower areas adjacent to their low tide refuge. The results of three national tagging programs were analysed to determine the movement patterns of adolescent and adult fishes. The coast-wide ORI-WWF National Voluntary Tagging Program and two dedicated research programs in marine protected areas (MPAs) at De Hoop MPA and Tsitsikamma National Park (TNP) recorded few large-scale movements of tagged adult blacktail, zebra and juvenile musselcracker. High spatial-resolution data from the TNP suggested movements were usually on scales far smaller than one km. Together with long periods at liberty for many recaptured individuals, this suggests these fishes are longterm residents of small home range areas. However, tagged musselcracker over 600 mm forklength (adults) were observed to make large-scale movements, including some in excess of 800 km from Eastern Cape to KwaZulu-Natal waters. Predominantly eastward movements of adults recaptured during the spawning season indicate seasonal spawning migrations that occur in different regions of the coast. These enable the use of prevailing oceanographic currents to disperse eggs and larvae to suitable rocky nursery habitat. The third component of this study made use of high-resolution data on the temporal and spatial distribution of catches by scientific angling in the TNP to examine the daily activity patterns of the study species in relation to diel and tidal cycles, and habitat use. Blacktail capture probability was correlated with the diurnal light cycle, with peaks close to twilight suggesting elevated crepuscular foraging activity. Catches of blacktail, zebra and small musselcracker were correlated with the tidal cycle, foraging peaking over high tide periods. All three species used shallow inshore habitats extensively for foraging, blacktail showing a preference for sandy areas, while zebra and small musselcracker preferred shallow reef. Capture probability of larger musselcracker, however, was unrelated to habitat, possibly evidence of increasing area and habitat use with an ontogenetic change in diet. The lifetime movement patterns of these three species are discussed in relation to conservation measures and their management in South African fisheries. Restricted movement throughout post-settlement life for blacktail and zebra, and during the juvenile phase for musselcracker, makes local populations vulnerable to overexploitation. At present, MPAs probably play an important role in protecting local blacktail and zebra populations from overexploitation, and limited post-settlement movements mean the degree of larval dispersal between protected and adjacent areas will likely determine the effectiveness of MPAs in enhancing fisheries for these species. By contrast, MPAs likely provide recruits to fisheries for musselcracker during ontogenetic movements and dispersal from MPAs during spawning migrations. MPAs only offer partial protection to adult musselcracker populations in the spawning season, but this could nevertheless be significant under high levels of exploitation.

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12

Phillips, Tracey Elizabeth. "Dispersal, settlement and recruitment : their influence on the population dynamics of intertidal mussels". Thesis, Rhodes University, 1995. http://hdl.handle.net/10962/d1005347.

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Recruitment of planktonic larvae into sedentary benthic populations regulates the population dynamics of marine invertebrates. The processes controlling recruitment, however, are poorly understood, and recruitment remains largely unpredictable, which complicates management of exploited shellfish resources. The mussels Perna perna, Choromytilus meridionalis and Mytilus galloprovincialis, found on the south coast of southern Africa, have planktonic larvae and sedentary adult stages. This thesis examines dispersal, settlement and early post-settlement growth and mortality, and their effect on recruitment and demography of intertidal mussel populations in the region of Algoa Bay on the south coast of southern Africa. Temporal and spatial variation in the body mass, density and size structure of mussels, the distribution of bivalve larvae on plankton grids in the nearshore zone and the distribution of a recently introduced invasive mussel, Mytilus galloprovincialis, were examined between 1989 and 1992. Furthermore, data on hourly or daily changes in wind strength and direction, air and sea surface temperatures and low and high tide levels in the study region, were obtained. There were 3-4 peaks in spawning (characterised by an abrupt decline in weight) and settlement activity annually. These peaks varied in exact timing, intensity and duration between sites and over time. However, at a site, spawning was followed by settlement 4-8 weeks later, and there was a significant (P < 0.05) direct correlation between spawning intensity prior to the appearance of a new cohort and the cohort density (settlement intensity). The stochastic spatial and temporal variation in breeding activity was superimposed on a more general pattern of a higher intensity of spawning and settlement in Algoa Bay than on the open coast, and a higher settlement intensity on coastal sandstone shores than on dune rock shores. Spawning was more frequent in winter and spring, and the probability of spawning and settlement peaked around the spring and autumn equinox, if temperature and wind conditions were suitable. Larval behaviour had little effect on their dispersal in the well-mixed nearshore region. Larvae were passively dispersed by currents, and their dispersal range and direction depended on prevailing winds and local topography. The sharp decline in density of recruit and adult M. galloprovincialis with increasing distance from the point of introduction, showed that some larvae were carried by wind generated currents over moderately long distances (-100 km). However, since most (76 %) M. galloprovincialis recruited within 4 km of the parent population, it is possible that larvae become trapped in small gullies and crevices around rocky shores, and have a limited dispersal range. This could explain the link between local patterns of spawning and settlement. The distribution and abundance of settlers on the shore was influenced by larval behaviour and the availability of settlement, substrata. Larvae preferred to settle primarily on foliose coralline algae and migrate to the adult mussel bed when they were larger (0.60-7 mm), but larvae also settled directly on adult mussels, possibly because the amount of coralline algae was limited. Both direct and secondary settlement were considered to be important in maintaining mussel populations since the rate of settlement was low(generally < 60 000.m-2). Cohort analyses showed that prior to maturity post-settlement growth (- 30 mm in 10 months) and mortality rates (60-100%) were high, but varied. When settlement intensity was low this variability uncoupled the relationship between spawning and recruitment intensity. Multiple regression analysis showed that together reproductive effort (gamete output), settlement intensity, growth and mortality prior to maturity, accounted for 76 % of the variance in recruitment into mature adult populations. The low settlement rate coupled with the short life span of mussels « 3 years), meant that populations underwent marked spatial and temporal variations in structure and abundance as settlement intensity varied, but there were consistent general differences between mussel populations on dune rock and sandstone shores in Algoa Bay and on the open coast. It was concluded from these results that, spawning intensity and post-settlement growth and mortality, rather than dispersal, regulated recruitment and the structure and abundance of intertidal P. perna and C. meridionalis populations along the south coast of southern Africa. On the basis of these results it is recommended that species with limited dispersal, variable recruitment and high natural mortality, such as P. perna, should be conserved by protecting a small part of the population in reserves, and controlling utilisation outside reserves to minimize disturbance to local brood stocks. Furthermore, since the potential for reseeding adjacent exploited areas is limited, several small reserves placed at regular intervals along the coast would be more effective than a single large reserve.

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13

Dreyer, Nicolaas Burger. "Within- and between-beach variation in intertidal macrofaunal communities inhabiting two Transkei sandy beaches". Thesis, Nelson Mandela Metropolitan University, 2008. http://hdl.handle.net/10948/1070.

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Until recently most sandy beach studies have made use of snapshot samples but the validity of this approach has been widely questioned. In this study we attempt to resolve this issue by repeatedly sampling two beaches using a stratified random design. Three sampling sessions took place, each approximately six months apart. The three sites on the first beach were selected according to the type of beach (reflective, intermediate and dissipative) with each morphological type duplicated on the second beach. Many of the physical variables measured had significant differences between the sampling sessions but only a few were significantly different between the Sites. Very few of the individual physical variables had significant relationships with the sandy beach macrofaunal abundance and density. However, composite indices had a greater number of significant relationships with the macrofaunal abundance and density. Also very few significant relationships were seen between the species richness and the physical variables of the beaches studied. Effluent line crossing frequency was the only physical variable that could predict species richness but it was considered a weak predictor. Changes in the zonation patterns within and between beaches were also investigated. The highest concentration of taxa and individuals was found near the low-water mark with a gradual reduction of both towards the high-water mark. Some of the sandy beach community variables (abundance, density and species richness) showed significant difference between the sampling sessions but no significant differences were seen between the two beaches. The presence of three zones was noted using MDS plots and Cluster diagrams. However, using a SIMPER analyses, four zones with the possibility of a fifth was noted.

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14

Roux, Maryanne. "The diversity and distribution patterns of intertidal fish in the Agulhas bioregion". Thesis, Nelson Mandela Metropolitan University, 2013. http://hdl.handle.net/10948/d1019712.

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This study aimed to expand the existing knowledge on the diversity and distribution patterns of intertidal fishes in the Sardinia Bay MPA and adjacent open access areas. It focussed particularly on in intertidal fish communities along the Agulhas Bioregion coast which has been understudied, especially in recent years. Typical resident species belonging to the family Clinidae were the most abundant, conforming to previous studies. Species from the family Gobiidae were the second most abundant in this study but this family was not previously recorded as being abundant. Transient species were unimportant in the current study which is in contrast to previous studies in the region and suggests a change in species composition. Certain transient species utilised intertidal rockpools as part of their nursery areas in the Eastern Cape, as has previously been found around Algoa Bay. A decrease in species richness from east to west was recorded in this study which has been noted by previous authors and the diversity and distribution patterns of the intertidal fish in the current study conformed to patterns found previously. The position of the biogeographic boundary between the Agulhas and Natal Bioregions could not be confirmed but Wavecrest (along the Transkei coastline) appeared to be part of a transition zone rather than a fixed break. More sampling around this area is recommended to determine the location and understand the dynamic nature of this boundary. The fish species were found to be vertically distributed across the shore with most of the resident species being more abundant across the low shore while the transient species were more abundant in the middle to low shore pools. This vertical distribution has been found at many sites around the world. The volume of the pools proved to be the primary controlling factor while the effect of temperature on vertical distribution could not be demonstrated. The benefits of the Sardinia Bay Marine Protected Area on this unexploited community of fishes could not be demonstrated but the long term benefit of protection has yet to be shown. Results from this study suggest that despite the correspondence with general biogeographic trends, the intertidal fish community has changed in composition (at least in terms of transient species) during the last 30 years and the cause for these changes may in part be reduced recruitment from exploited linefish.

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15

Malherbe, Hanlie. "Assessment of the alien marine intertidal invertebrates in the Kogelberg Biosphere Reserve, South Africa". Thesis, Stellenbosch : Stellenbosch University, 2011. http://hdl.handle.net/10019.1/17981.

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Thesis (MScConEcol)--UnStellenbosch University, 2011.
ENGLISH ABSTRACT: The privilege of utilising resources from the globe's marine ecosystems is threatened. Adequate regional and global conservation efforts are vital. Understanding species' distributions and the environmental variables influencing community structures are important for instigating optimum conservation plans. A major threat facing marine ecosystems is the introduction and proliferation of alien invasive species. The distribution and geographical expansion of marine alien invasive species, along with environmental variables driving their increase is also critical for drawing up conservation plans. In response to this point, this study addresses gaps in our knowledge regarding intertidal marine invertebrate species distributions particularly that of marine alien species in the Kogelberg Biosphere Reserve (KBR) and adjacent Betty's Bay Marine Protected Area (MPA) in the Western Cape of South Africa, a prime area for south-coast marine conservation. Species identifications were done in September 2010. Two marine alien invertebrate species were identified along the coastline. These were the invasive mytilid Mediterranean mussel Mytilus galloprovincialis and the bryozoan Watersipora subtorquata. A quantitative systematic survey of the intertidal region, consisting of seven rocky shore sites was then undertaken from October 2010 to December 2010. The abundance of all focal marine invertebrate species, within six selected habitat types was assessed. Environmental variables were also recorded. Statistical tests were done to investigate for significant interaction in mean abundance and mean species richness among intertidal zones and protection status (MPA and non-MPA), and among intertidal sampling units (SU‟s) and protection status. There was also investigated for significant difference in mean abundance and mean species richness across intertidal zones and habitat types where protection status was not taken into account, and to test for significant differences in mean abundance and mean species richness between the intertidal zones and habitat types. Correspondence analyses were used to illustrate relationships between species composition and the defined environmental variables. Tests were done to investigate for significant differences in mean abundance of the identified marine alien species between the MPA and non-MPA, study sites, SU's, and wave exposures. These results indicated that vertical and horizontal stress gradients along the shore mainly influence abundance and species richness. The significantly higher abundance of M. galloprovincialis outside the MPA is due to its preference for wave-exposed areas. The reason for the difference in the total abundance of W. subtorquata in the different habitats is not clear, although it appears that the higher abundance of this species in the MPA is because the sheltered nature of the MPA. M. galloprovincilais displaces indigenous species. W. subtorquata does not cause any significant harm along the coast of South Africa. This study indicates that the abundance of M. galloprovincialis and W. subtorquata in the MPA is relatively low. The MPA is therefore in good condition with regards to intertidal alien species. It is important that the MPA and adjacent KBR's coastline maintain its current pristine status.
AFRIKAANSE OPSOMMING: Die voorreg om mariene hulpbronne te benut, word bedreig. Voldoende nasionale en globale mariene bewaring is krities. 'n Deeglike kennis van spesies verspreiding en omgewingsveranderlikes wat gemeenskapstrukture beïnvloed is noodsaaklik vir optimale bewaringspogings. Mariene indringerspesies en verspreiding van indringerspesies bedreig mariene ekosisteme. Dit is belangrik om basiese kennis in te win oor die geografiese verspreiding van indringerspesies saam met die omgewingsveranderlikes wat hierdie verspreiding beïnvloed. Hierdie studie fokus dus daarop om die kennis met betrekking tot intergety ongewerwelde spesiesverspreiding, veral dié wat uitheems is langs die kus van die Kogelberg Biosfeer Reservaat (KBR) en aangrensende Bettys Baai Mariene Beskermde Gebied (MBG) in die Wes-Kaap in Suid-Afrika uit te brei. Hierdie streek word beskou as gesog vir mariene bewaring in Suid-Afrika. Identifikasie van spesies is in September 2010 gedoen. Twee intergety uitheemse ongewerwelde spesies is langs die kus geïdentifiseer; die indringer 'mytilid' Mediterreense mossel - Mytilus galloprovincialis en die 'bryozoa' Watersipora subtorquata. 'n Kwantitatiewe sistematiese oorsig van die intergety rotsagtige streek, bestaande uit sewe lokaliteite, is gedoen. Steekproefneming is vanaf Oktober 2010 tot Desember 2010 uitgevoer. Alle fokale intergety ongewerwelde spesies, in ses geselekteerde habitattipes is getel. Omgewingsveranderlikes is aangeteken. Daar is statisties getoets vir verskille in die talrykheid en spesiesrykheid tussen die intergety zones en beskermingsstatus (MBG en nie-MBG), en tussen die intergety habitattipes en beskermingsstatus. Daar is ook getoets vir verskille in talrykheid en spesiesrykheid tussen die intergety zones en habitattipes waar beskermingsstatus nie in ag geneem is nie. Ooreenstemmende analises is gedoen om die verhoudings tussen die spesiesamestelling en die gedefinieerde omgewingsveranderlikes te illustreer. Daar is statisties getoets vir verskille in die talrykheid van die geïdentifiseerde uitheemse spesies tussen die MBG en nie-MBG, die verskillende lokaliteite, die verskillende habitattipes en tussen die verskillende golf blootstellings. Hierdie studie dui aan dat vertikale en horisontale stresgradiënte die hoofoorsaak is wat talrykheid en spesiesrykheid beïnvloed. Die aansienlik hoër talrykheid van M. galloprovincialis buite die MBG is van die gebied se hoër golfblootstelling. Die beduidende verskil in talrykheid van W. subtorquata is onduidelik. Dit kan egter afgelei word dat die beskutte aard van die MBG 'n rol speel by die aansienlik hoër talrykheid van hierdie spesie binne die MBG. M. galloprovicialis verplaas inheemse spesies. Geen beskikbare bewys dui daarop dat W. subtorquata enige beduidende skade langs die kus van Suid-Afrika aanrig nie. Die lae talrykheid van beide hierdie spesies binne die MBG dui daarop dat hierdie unieke area steeds in goeie toestand ten opsigte van intergety uitheemse spesies is. Dit is noodsaaklik dat die huidige status van die MBG en aangrensende kuslyn gehandhaaf word.

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16

Von, Der Meden Charles Eric Otto. "Intertidal patterns and processes tracking the effects of coastline topography and settlement choice across life stages of the mussels perna perna and mytilus galloprovincialis". Thesis, Rhodes University, 2010. http://hdl.handle.net/10962/d1005407.

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Within landscapes, spatial heterogeneity is common and specific landscape features can influence propagule dispersal by wind or water, affecting population connectivity and dynamics. Coastline topographic features, such as bays and headlands, have a variety of biophysical effects on nearshore oceanography, larval transport, retention and supply, and the processes of larval settlement and recruitment. Although this has been demonstrated in several parts of the world, engendering a perception of a general ‘bay effect’, few studies have investigated this generality in a single experiment or region, by replicating at the level of ‘bay’. The Agulhas biogeographic region of the south coast of South Africa is a useful system within which to test for such generality. Using the intertidal mussels Mytilus galloprovincialis and Perna perna as model organisms, patterns of adult distribution were surveyed across four large ‘halfheart’ bays and intervening stretches of open coast, providing replication at the level of ‘bay’ and duplication of ecologically similar species. In support of a general, pervasive influence of bays on intertidal populations, mussel cover was found to be greater in bays than on the open coast for both species, although the effect was strongest for M. galloprovincialis. To explain this adult distribution, settlement, post-settlement mortality and recruitment were examined over 12mo at the same sites, with the prediction that rates of each would favour larger bay populations. Contrary to this, an interaction between month and bay-status was found, with greater settlement and recruitment on the open coast than in bays reflecting extreme settlement and recruitment events at 3 westerly open coast sites during summer. Re-analysis excluding these outliers, revealed the expected effect, of greater settlement and recruitment in bays. While this indicates the broad generality of the bay effect, it highlights exceptions and the need for replication in time and space when examining landscape effects. Measuring post-settlement mortality required testing small-scale settlement behaviour on established and newly deployed settler collectors. It was found that all settlers preferred collectors with biofilm, but that primary settlers avoided conspecific settlers, while secondary settlers were attracted to them. With discrepancies in settler attraction to new and established collectors accounted for, initial (over 2d) and longer-term (over 7d) post-settlement mortality rates were found to be substantial (ca 60 %) for both species. No topographic effect on p-s mortality was evident. Finally, recruit-settler, adult-recruit and interspecies correlations were examined at regional and local scales. Synergistic (or neutral) effects maintained the initial settlement pattern in recruit and adult populations regionally, but not at local scales; striking interspecies correlations suggested the influence of common regional transport processes. Ultimately, the results emphasize the importance of the direction of effects in different life stages and at different spatial scales, and the possibility that antagonistic effects may mask even strong patterns.

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17

Nakin, Motebang Dominic Vincent. "Effects of marine reserves on the biology of rocky intertidal limpets along the southern coast of South Africa". Thesis, Rhodes University, 2009. http://hdl.handle.net/10962/d1005365.

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Limpets are harvested by people in South Africa, but are selected in terms of species and size. The effects of marine reserves on the biology of commonly exploited (Helcion concolor and Scutellastra longicosta) and rarely exploited species (Cellana capensis and Scutellastra granularis) were investigated on the southeast coast of South Africa at two reserve and two non-reserve sites. For each species, a 4-way nested ANOVA was used to test the effects of month, reserve, site (nested within reserve) and area (nested within site and reserve) on population density, size structure and recruitment of these limpets. The data were collected monthly over 20 months. The overall results indicated a gradient of exploitation among species, S. longicosta was the most heavily exploited species and S. granularis the least exploited species. However, there was also a gradient of exploitation between reserves and non-reserves. Xhora was the most heavily exploited site while Nqabara was less heavily exploited. Of the two reserve sites, Cwebe had more poachers than Dwesa. In most analyses, the month x area (reserve (site)) interaction was significant. However, this was largely an artifact due to comparisons of areas in different sites and significant differences between areas within sites occurred in relatively few months. Densities were greater inside reserves for all species except C. capensis. For S. longicosta and H. concolor this was expected but not for S. granularis and the result possibly reflects its opportunistic exploitation in the absence of the preferred species or indirect effects of reserves. Commonly exploited species and the rarely exploited C. capensis clearly showed greater mean and maximum sizes in reserves but there were month/site (reserve) interactions. Months with significant differences between reserves and nonreserves in both mean and maximum sizes generally occurred more often for commonly exploited than rarely exploited species, but C. capensis showed the strongest reserve effect on maximum size. Interview surveys showed that, although not normally exploited, C. capensis is sometimes mistaken for H. concolor and this suggests that large individuals are unintentionally harvested outside reserves. There were no significant reserve effects on recruitment for any species. Although Xhora had the lowest densities and limpet sizes, it showed the highest recruitment especially for S. longicosta, suggesting that larvae can be transported far from where they are released and settle in non-reserve sites regardless of adult densities. Reserve as a main factor was not significant for the rarely exploited species, but there was a significant month x reserve interaction, with non-reserves having greater GSI values than reserves in most months. Growth rates were examined using individual tagging and cohort analysis. The two techniques gave different results, with individual tagging giving higher growth estimates than cohort analysis. Except for the territorial species S. longicosta, growth was higher in non-reserves and inversely correlated with population density. Mortality estimates using the Cormack-Jolly-Seber model indicated that the rarely exploited species had significantly greater capture probabilities in reserves while no significant reserve effects were observed for the commonly exploited species. Reserve effects on survival probability were significant only for S. longicosta, with reserves being greater than nonreserves and no significant effects for any other species. Enhanced survival in reserves was attributed to the effects of human exploitation. In theory, marine protected areas show increases in densities, sizes and reproductive output of exploited species, but the present results revealed that the efficacy of reserves depends on the status of the species, not only whether it is exploited or non-exploited, but also whether it is territorial.

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18

Ncube, Lindani. "Evaluation of the effective micro-organisms (EM) on soil chemical properties and yield of selected vegetables in the Eastern Cape, South Africa". Thesis, University of Fort Hare, 2008. http://hdl.handle.net/10353/86.

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Effective microorganisms (EM), a commercial concoction of microbes that includes yeasts, fungi, bacteria and actinomycetes, have been found to be effective in enhancing crop growth by a number of scholars. It is registered in South Africa, but it had not been thoroughly investigated. The present study investigated the effects of EM on growth, yield and quality of tomato (Lycopersicon esculentum Mill), butternut (Curcurbita moschata) and Swiss chard (Beta vulgaris), along with selected soil properties. In field-grown tomato it was observed that the application of EM caused a significant increase in the number of fruits at seven weeks after transplanting. However, plants treated with EM alone, or EM in combination with other amendments, subsequently produced lower yields owing to an outbreak of early and late blights which affected them the most severely. Combined applications of EM with organic amendments improved plant N content and increased soil N content above initial levels. The application of compost resulted in soil N and P concentrations higher than those of the control presumably due to nutrients being slowly released from the compost material. In a follow up greenhouse trial EM application had a negative effect on tomato leaf dry matter yield, number of leaves, number of trusses, fruit yield and number of fruits. The negative effects of EM were ascribed to N immobilization by the EM that could have resulted in reduced N availability to plants. The lower number of fruits associated with EM application resulted in improved average fruit weight of tomatoes grown in the greenhouse, possibly as a result of more assimilates being partitioned to the few fruits EM application also had a negative effect on field grown butternut as reflected by lower total yield, lower marketable yield and lower first grade yield. The results were attributed to immobilization of N induced by application of EM, and to the inability of EM to control pumpkin fly that attacked very young fruit, resulting in their failure to develop or resulting in the down grading of mature fruits. The application of EM alone had a positive but non significant effect on the yields of both the first and second harvests of Swiss chard. However, when applied with compost or goat manure, a non significant negative effect on yield was observed. When applied with inorganic fertilizer, EM had no effect on yield but tended to increase the uptake of nitrogen by Swiss chard. Though goat manure had a narrower C: N ratio than compost, it did not result in greater EM effectiveness as had been hoped. However, goat manure had a more positive effect on soil properties than compost. It increased the N, P, and K contents of the soil and resulted in a narrower C: N ratio of the soil compared to compost. Generally, the results of the four trials conducted with three different crops indicated that EM had inconsistent effects on crop performance.

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19

Foster, Gregory George. "Aspects of the biology and ecology of some intertidal Holothurians (Echinodermata) along the Eastern Cape coast of South Africa". Thesis, Rhodes University, 1994. http://hdl.handle.net/10962/d1005320.

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Four species of dendrochirote holothurians, Roweia stephensoni John, Pseudocnella sykion Lampert, Aslia spyridophora Clark, Roweia frauenfeldi frauenfeldi Ludwig, and one aspidochirote holothurian, Neostichopus grammatus Clark, are common inhabitants of the intertidal regions of the eastern Cape rocky shores of South Africa. All five species are sympatric for most of their geographical distribution. The intertidal distributions, densities and biomasses of R. stephensoni, P. sykion and N. grammatus were examined at six sites from Port Elizabeth to East London in the eastern Cape. At all sites the three species showed similar overlapping zonations with R. stephensoni and P. sykion reaching their highest maximum mean densities and biomasses (drained wet weight) in the lower mid-shore region (401m² and 684g/m², 181m² and 269g/m², respectively at Port Elizabeth), whilst N. grammatus in the low-shore region (61m² and 72g/m², at Port Elizabeth). The highest densities and biomasses of all three species were recorded on boulder shores that had minimal sand inundation. Seasonality of reproduction of R. stephensoni, P. sykion and N. grammatus was compared at Port Elizabeth, using gonad index values, gonadal tubule diameters, egg diameters and spermatozoon content in tubules from January 1992 until August 1993. All three species are dioecious and did not deviate from a 1: 1 sex ratio. Sizes at first sexual maturity were 2.5-2.9 cm³ for R. stephensoni and P. sykion, and 3.0-3.9cm³ for N. grammatus. The gonads of R. stephensoni and P. sykion consist of a bunch of unbranched tubules of equal diameter, with males having more tubules of a smaller diameter than females. By contrast, the gonad of N. grammatus consists of two tufts of multiple branched tubules. All three species followed annual reproductive cycles, and in R. stephensoni and P. sykion gametogenesis occurred from March 1992 until August/September 1992, and maturity was maintained until the main spawning event in January 1993. By contrast, in N. grammatus gametogenesis occurred from July 1992 until September 1992, and maturity was maintained until the main spawning event in December 1992/January 1993. Unlike R. stephensoni and P. sykion the reproductive cycle of N. grammatus was more pronounced, in that the gonad regressed after spawning. Aspects of the feeding biology of R. stephensoni, P. sykion, A. spyridophora, R.ffrauenfeldi and N. grammatus were compared, using the gross buccal tentacle morphology, type and size range of ingested food particles, and gut lengths. Scanning electron microscopy revealed that the buccal tentacles of R. stephensoni, P. sykion and A. spyridophora could be classified as dendritic, branching numerous times with the tips terminating in numerous nodes covered with discs of papillate projections. The buccal tentacle structure of R. f frauenfeldi deviated from the typical dendrochirote dendritic form. The tentacles are stout with few branches which terminate in large bulbous nodes lacking discs of papillate projections. Neostichopus grammatus possesses buccal tentacles that could be classified as peltate, terminating in large nodes which also lacked discs of papillate projections. Roweia stephensoni, P. sykion and A. spyridophora are suspension-feeders, ingesting food particles mostly <53μm in size. Roweia f frauenfeldi was classed as a "heavy" suspension-feeder, ingesting food particles mostly between 250μm-1.18μm, while N. grammatus is a deposit-feeder, ingesting benthic sediments mostly between 106-500μm. The gut lengths of the dendrochirote holothurians were found to be significantly longer than that of the aspidochirote, and may be attributed to the nature of the food ingested.

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20

Gordon, A. K. (Andrew K). "Assessing the effect of a laundry detergent ingredient (LAS) on organisms of a rural South African river". Thesis, Rhodes University, 2012. http://hdl.handle.net/10962/d1006201.

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Powdered laundry detergents are consumed in high volumes worldwide. Post use, they are directed toward water resources via wastewater treatment works or, as is the situation in many rural areas of South Africa, they enter the environment directly as a result of laundry washing activity undertaken alongside surface waters. Within wastewater treatment works, the main ingredient in powdered laundry detergents, the narcotic toxin linear alkylbenzene sulfonate (LAS), is mostly removed, rendering the waste stream a negligible risk to the aquatic biota of receiving waters. In contrast, the biological and ecological impacts of direct LAS input to the aquatic environment, as a consequence of near-stream laundry washing, are yet to be fully realised. Consequently, this thesis posed two research questions: 1) 'What are the LAS concentrations in a small rural South African river'? and 2) 'Is the in-stream biological community negatively affected at these concentrations?' The chosen study area, the community of Balfour in the Eastern Cape Province, is like many rural areas of South Africa where inadequate provision of piped water to homesteads necessitates laundry washing alongside the nearby Balfour River. The first research question was addressed in two ways: by predicting LAS concentrations in Balfour River water by assessing detergent consumption and laundry washing behaviour of residents living alongside the river; and measuring actual in- stream LAS concentrations on different days of the week and during different seasons. Results indicated that LAS concentrations were highly variable temporally and spatially. High peak concentrations of LAS occurred infrequently and were limited to the immediate vicinity of near-stream laundry washing activity with the highest measured concentration being 342 μg.L ⁻¹ and the average 21 μg.L ⁻¹ over the sampling period. The second research question was addressed by integrating the chemical evidence, determined from the first research question, with the biological evidence of stress responses measured in macroinvertebrates collected downstream of near-stream laundry washing activity on the Balfour River. Predicted and measured LAS exposure concentrations from the Balfour River were compared to a water quality guideline for LAS (304 μg.L ⁻¹), specifically derived in this thesis. Biological stress responses were measured at different levels of organisation: two sub-cellular responses (lipid peroxidation and cholinesterase activity); three measures of macroinvertebrate tolerance to water quality impairment; five measures of community composition; three measures of community richness; and a surrogate measure of ecosystem function (functional feeding groups). Weight-of-evidence methodology was utilised to assess, integrate and interpret the chemical and biological evidence, and at its conclusion, determined no effect on the in-stream biological community of the Balfour River downstream of laundry washing activity.

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21

Van, Jaarsveld Alwyn Jacobus. "Plant parasitic organisms in the rizosphere of apple trees in the Western Cape, with special reference to woolly apple aphid". Thesis, Stellenbosch : Stellenbosch University, 2003. http://hdl.handle.net/10019.1/53551.

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Abstract (sommario):

Thesis (MScAgric)--University of Stellenbosch, 2003.
ENGLISH ABSTRACT: Various aspects of the biology and ecology of woolly apple aphid, Eriosoma lanigerum, were investigated, including initial galling damage caused by E. lanigerum to the roots of apple trees, the possible relationship between E. lanigerum and Xiphinema and Pratylenchus nematodes and the effectiveness of Biostart 2000® and Furfural® as possible control agents of E. lanigerum in the orchard. Preliminary root damage by first instar E. lanigerum feeding was characterized by the mechanical injury of endodermis and parenchyma tissues. Damage by second, third and fourth instar E. lanigerum was similar, but the symptoms were more pronounced. Damage caused by adults included a pronounced swelling at infected areas of the root. Cell walls hardened until the root was radially strengthened with sclerenchyma tissue and nonconducting xylem vessels while the cuticle expanded greatly through the growth of corklike cambium tissue. There was no direct relationship between the population dynamics of E. lanigerum and those of Xiphinema and Pratylenchus nematodes. The occurrence of E. lanigerum appeared to be seasonal while P. penetrans and Xiphinema numbers fluctuated erratically. Undamaged root nitrogen levels seemed to correspond with the normal root growth cycle. Nitrogen levels from galled roots were significantly lower than those of undamaged roots, probably due to E. lanigerum feeding. Soils rich in fine sand and clay sustained higher populations of E. lanigerum and Xiphinema than sandy soils. The number of E. lanigerum found in soil samples correlated well with the damage index allocated to the samples. The numbers of Xiphinema found in soil samples also correlated well with the damage index allocated to the samples according to suspected Xiphinema damage symptoms. Both Biostart 2000® and Furfural® were effective as control agents of woolly apple aphid. Furfural'Ï, a chemical waste product of the sugarcane industry, was however not as effective as Biostart 2000®, a product that includes an activator and three bacterial species, Bacillus laterosporus, B. chitinosporus and B. licheniformis. The bacteria in the Biostart 2000® treated pots could replicate themselves under suitable conditions while Furfural® dilutes with each watering. Biostart 2000® is also easier to prepare than Furfural® since the components of Biostart 2000® readily mix to form a paste easily thinned by water, whereas Furfural® is an oily substance that does not easily disperse in water. Root damage was initiated soon after E. lanigerum started feeding, however there was no apparent relationship between E. lanigerum and the nematode species. The most promising, environmentally friendly control measure was Biostart 2000®.
AFRIKAANSE OPSOMMING: Verskeie aspekte van biologie en die ekologie van die appel bloedluis, Eriosoma lanigerum, was ondersoek insluitende aanvanklike galvorming veroorsaak deur E. lanigerum op wortels van appelbome, die moontlike verwantskap tussen E. lanigerum en Xiphinema en Pratylenchus nematodes en die effektiwiteit van Biostart 2000® en Furfural® as moontlike beheeragente van E. lanigerum in die boord. Aanvanklike wortelskade deur eerste ins tar E. lanigerum voeding was gekenmerk deur die meganiese beskadiging van endodermale en parenchiem weefsel. Skade veroorsaak deur tweede, derde en vierde instar E. lanigerum was soortgelyk alhoewel die simptome meer beklemtoond was. Skade deur volwassenes het 'n meer duidelike swelsel by geïnfekteerde wortelareas ingesluit. Selwande het verhard totdat die wortel radiaalsgewys versterk was met skierenchiem weefsel en nie-geleidende xileemvate terwyl die kutikula grootliks toegeneem het deur die groei van kurkagtige kambiumweefsel. Daar was geen direkte verwantskap tussen die bevolkingsdinamika van E. lanigerum en dié van Xiphinema en Pratylenchus nematodes nie. Die voorkoms van E. lanigerum was seisoenaal terwyl P. penetrans en Xiphinema se getalle onvoorspelbaar gefluktueer het. Onbeskadigde wortel stikstofvlakke het ooreengestem met die normale wortel groeisiklus. Stikstof vlakke van galwortels was noemenswaardig laer as dié van onbeskadigde wortels, heel waarskynlik as gevolg van voeding deur E. lanigerum. Grond ryk aan fyn sand en klei het groter bevolkings van E. lanigerum en Xiphinema onderhou as sanderige gronde. Die aantal E. lanigerum in grondmonsters het goed ooreengestem met die skade indeks wat aan die monsters toegeken was. Die aantal Xiphinema in grondmonsters het ook goed ooreengestem met die beskadigingsindeks wat aan die monsters toegeken is weens vermoedelike Xiphinema skade simptome. Beide Biostart 2000® en Furfural® was effektief as beheeragente van die appelbloedluis. Furfural'", 'n afvalproduk van die suikerriet industrie, was egter minder effektief as Biostart 2000®, 'n produk bestaande uit 'n aktiveerder en drie bakterie spesies, Bacillus laterosporus, B. chitinosporus en B. licheniformis. Die bakterië in die Biostart 2000® behandelde potte kon vermeerder onder gunstige toestande terwyl Furfural® na elke besproeiing verdun het. Biostart 2000® is ook makliker om aan te maak as Furfural® aangesien die bestanddele van Biostart 2000® geredelik meng tot 'n wateroplosbare pasta, terwyl Furfural® 'n olierige vloeistofis wat moeilik 'n waterige suspensie vorm. Wortelskade het plaasgevind kort nadat E. lanigerum begin voed het, alhoewel daar geen duidelike verwantskap tussen E. lanigerum en nematode spesies voorgekom het nie. Die mees belowende omgewingsvriendelike beheermaatreël was Biostart 2000®.

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22

Hall, Madison. "What limits an invasive biotic and abiotic effects on the distribution of the invasive mussel mytilus galloprovincialis on the South African coastline". Thesis, Rhodes University, 2015. http://hdl.handle.net/10962/d1017805.

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23

Mdzeke, Naomi Patience. "Contamination levels in and cellular responses of intertidal invertebrates as biomarkers of toxic stress caused by heavy metal contamination in False Bay". Thesis, Stellenbosch : Stellenbosch University, 2004. http://hdl.handle.net/10019.1/53733.

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Abstract (sommario):

Thesis (PhD) -- Stellenbosch University, 2004.
ENGLISH ABSTRACT:Heavy metals are persistent environmental contaminants whose sources of inputs into the environment are both natural and anthropogenic. The levels of heavy metals (cadmium, copper, nickel, lead and zinc) in the False Bay intertidal zone were measured in the water, sediments and invertebrate species between August 2000 and August 2001. The results of the water and sediment analyses revealed that most pollution was associated with the northern shore of the bay between Strand and Muizenberg, where the most populated and industrial catchments occur. Significant spatial variations occurred, indicating the presence of localised contamination, while seasonal variations may be related to changes in precipitation and runoff at different times of the year. The concentrations of cadmium, nickel and lead were occasionally higher than the levels recommended by the South African Water Quality Standards. The possible sources of pollution at the different sites are also discussed. The concentrations of the five metals in the different invertebrate species (Oxystele tigrina, 0. sinensis, Choromytilus meridionalis, Patella oculus, Patiriella exigua and Tetraclita serrata) also revealed significant seasonal and spatial variations, with both the soft tissues and shells accumulating heavy metals. The barnacle T serrata from Rooiels had the highest cadmium concentration (70.67 J.lg/g dry weight), which may be related to historic pollution inputs from the military activities which took place at a weapons testing site at this site between 1987 and 1994, although no evidence was found to confirm this. The periwinkle 0. tigrina from Strand had the highest copper concentration (70.25 J.lg/g) while the limpet P. oculus from the same site had the highest nickel concentration (35.75 J.lg/g). The shells of the mussel C. meridionalis from Muizenberg had the highest concentration of lead (25.75 J.lg/g). Since cadmium occurs as a constituent of phosphate fertilisers used widely in the False Bay catchments, the effects of cadmium exposure on the different species were investigated during 14-day laboratory exposures to 200 and 400 J.lg/LCdCh. The results revealed a general pattern of tissue metal increase in the exposed organisms, followed by slight reductions after decontamination in clean seawater. The viscera and kidneys of C. meridionalis accumulated most of the dissolved cadmium. The shells of the mussels also accumulated cadmium, indicating the possible use of shells as a detoxification matrix.
AFRIKAANSE OPSOMMING:Swaarmetale is persisterende omgewingskontaminante waarvan die insetbronne beide natuurlik of van menslike oorsprong kan wees. Die kontaminasievlakke van swaarmetale (kadmium, koper, nikkel, lood en sink) in die Valsbaai tussengetysone is in die water, sedimente en invertebraatspesies bepaal vanaf Augustus 2000 tot Augustus 2001. Voorlopige resultate van die water- en sedimentontledings het getoon dat die meeste besoedeling by die noordelikke oewer van die baai voorgekom het tussen Strand and Muizenberg, waar die mees digbewoonde en ge-industrialiseerde opvangsgebiede is. Betekenisvolle ruimtelike en seisoenale variasie het in die konsentrasies van swaarmetale voorgekom, met die ruimtelike variasie wat moontlik gelokaliseerde kontaminasie aandui terwyl die seisoenale variasies weer verband mag hou met veranderings in die neerslag en afloop gedurende verskillende tye van die jaar. Die konsentrasie van kadmium, nikkel en lood was somtyds hoer as die vlakke wat deur die Suid-Afrikaanse Waterkwaliteitsstandaarde voorgestel word. Die moontlike bronne van besoedeling in die verskillende areas is ook in bespreking genoem. Die konsentrasies van die vyf swaametale in die verskillende invertebraatspesies (Oxystele tigrina, 0. sinensis, Choromytilus meridionalis, Patella oculus, Patiriella exigua and Tetraclita serrata) het ook seisoenale en ruimtelike variasies vertoon, die swaarmetale het in die sagte weefsel en skulpe van die invertebrate geakkumuleer. Die hoogste gemiddelde konsentrasie van kadmium (70.67 ).lg/g droe massa) is in die heel-liggaam monsters van die eendemossel T serrata gemeet wat by Rooiels versamel is. Die vlakke mag verband hou met die oprigting en aktiwiteite van die wapentoetsingsaanleg in die opvanggebied van die Rooiels lokaliteit tussen 1987 en 1994, maar geen bewyse daarvan is gevind nie. Die tolletjie, 0. tigrina wat in die 10kaliteit by Strand versamel is het die hoogste gemiddelde konsentrasie koper gehad 70.25 pig droe massa), terwyl die klipmossel P. oculus by dieselfde versamelpunt die hoogste konsentrasie nikkel (35.75 ).lg/gdroe massa) gehad het. Eksperimentele studies is ook uitgevoer op vier invertebraat spesies wat vir 14 dae in akwaria blootgestel is aan see-water met 200 en 400 p,g/L CdCh, en daama gedekontamineer is in skoon seewater.
The NRF and the University of Stellenbosch, for funding this study.

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24

Kotey, Daniel Ashie. "Genetically modified (GM) maize cultivation by smallholders in the Eastern Cape Province of South Africa: Effects on target and non-target organisms and adoption challenges". Thesis, University of Fort Hare, 2017. http://hdl.handle.net/10353/5161.

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The use of genetically modified (GM) maize technology is subject to compliance with stewardship requirements and the adoption of specific management practices that promote the long-term effectiveness and environmental sustainability of the technology. For smallholders to comply with these requirements and adopt the desired management practices to ultimately benefit from the technology, they require information that creates awareness of the value of these requirements. To determine what information farmers receive about GM maize and how this information is disseminated to farmers, face to face interviews were conducted with 81 extension personnel and 210 smallhoder GM maize farmers in the Eastern Cape Province of South Africa. The effect of Bt maize introduction and management practices in smallholder maize agroecosystems in the Eastern Cape on Bt maize target [Busseola fusca (Fuller) (Lepidoptera: Noctuidae)] and non-target insect pests [Agrotis segetum (Denis & Schiffermüller) (Lepidoptera: Noctuidae), Helicoverpa armigera (Hübner) (Lepidoptera: Noctuidae)] and a snail species, [Cornu aspersum (Müller) (Gastropoda: Helicidae)] was determined through laboratory, field and cage experiments. The effect of smallhoder farmers‟ GM maize cultivation practices on the profitability of GM maize technology was also determined through on-farm trials in different localities of the Eastern Cape identified as hot-spots for stem borer and weed infestation. Results of surveys indicated that extension personnel had a low level of awareness of GM maize technology stewardship requirements. GM maize technology was also largely disseminated to smallholder farmers through non-participatory approaches and print media sourced from GM seed companies. Although farmers had a high level of contact with extension services, they lacked access to information about GM maize technology. Smallholder farmers‟ level of awareness about GM maize and compliance with the requirement for the planting of non-Bt maize refuge areas adjacent to Bt maize was also very low. While Bt maize event (MON810) commonly cultivated by smallholder farmers in the Eastern Cape Province had a variable effect on A. segetum under laboratory conditions, it had no effect on the incidence of plants damaged by A. segetum and C. aspersum under field conditions. The incidence of H. armigera damage on Bt maize plants was however significantly affected by Bt maize. Populations of B. fusca collected from smallholder maize fields in the province were observed to be still highly susceptible to Bt maize. Results of on-farm evaluation of the profitability of GM maize revealed that stem borer pressure, growing conditions, input supplies and market access affect the productivity and profitability of GM maize cultivation. Challenges within the extension and advisory services of the Eastern Cape which can militate against smallholder farmers‟ ability to benefit from GM maize technology and sustain the long-term efficacy of the technology were identified during this study. Given these challenges and the fact that the cultivation of GM maize may not be profitable under typical smallholder maize cultivation conditions and management practices, dissemination approaches that provide farmers the opportunity to evaluate GM maize technology alongside alternate technologies under their conditions, may prove beneficial.

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25

Adeniyi, Oluwafunmilola Foluke. "Access to safe food in South Africa as a human rights imperative". Thesis, University of the Western Cape, 2015. http://hdl.handle.net/11394/4930.

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Magister Legum - LLM
The aim of this study is to examine laws and policies relating to food safety in South Africa, specifically with regard to labelling requirements in the food industry. It is hoped that this research will serve as a pointer for policy and legislative reforms in a bid to identify weak areas as well as encourage accountability and strengthen government’s response to the realisation of the right to safe food as a human right imperative.
National Research Foundation (NRF)

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26

Jansen, van Rijssen Fredrika W. "Analysis of the credibility of South African risk governance of genetically modified organisms and pesticides". Thesis, University of Pretoria, 2013. http://hdl.handle.net/2263/37369.

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In this study, two diverse scientific areas of research, namely, biological-chemical and public administration, were drawn upon to find an answer for improved risk governance of genetically modified organisms (GMO/GM) and pesticides. The need for such a study appeared from the constraints experienced with regulatory approval of GMO crops in South Africa. The knowledge gained from research on risk governance of GMOs could also be applied to pesticides. Protracted procedures causing delays in approval and increasingly stringent regulatory requirements of GMOs resulted in negative implications for research, development and commercialisation. Approval of several South African co-developed GMOs has been delayed or rejected that resulted in withdrawal or reducing of research activities, apart from appeals against decisions. The objective of the study was to identify some of the reasons for delays as experienced in risk assessments and to propose remedial actions, including the critical interface between role players in risk governance. The approach taken in this research was to obtain, by means of a questionnaire, a broad view of risk governances of GMOs as measured with criteria of good governance experienced by scientists of biotechnology and related disciplines. This was followed by another questionnaire with focus on one specific area that caused delays for GMO permit applicants. The investigation included analysis of South African legislation, guidelines and interviews. The research on risk assessment narrowed down to the two areas, illustrated by South African applicable case studies, namely, food risk/safety assessment of GMO cassava and environmental risk assessment of GMO sorghum. Approaches to improve assessments are being recommended. Uncertainty in risk assessment is an important reality because of humankind‘s limited knowledge of nature. Uncertainty is further addressed by precautious management, described as the precautionary principle is a norm legislated by the South African government in line with international agreements (the Cartagena Protocol on Biosafety). The terminology, precautionary approach and principle are used interchangeably in literature. The application of the precautionary principle in South African legislation and the difficulty that could be experienced in decision making are illustrated in the case study on ‗possible unintended changes in endogenous allergens‘ in GMO maize. The research showed the importance of timely risk communication between risk assessors, risk managers (decision makers) and stakeholders in advance of the commencement of risk assessment. The importance of timely consideration of socio-economic impact of GMOs and pesticides is touched on. Risk governance structures, for both GMOs and pesticides are proposed, based on the most democratic and transparent governance models taking into consideration the European initiatives for improved risk governance. This included an interface for interaction among role players, namely, risk assessors, risk managers, scientists and stakeholders. The up-front role of an array of scientists, as the most trustworthy communicators in contentious scientific issues, is of specific importance because of the fast developing and very broad field of genetic modification of many crops. South Africa‘s national research institutes should play a much bigger role as scientific advisors in scientific risk policy making and framing for risk assessments. It is of great importance that risk assessments are focused on risks and not on the gathering of bucketsful of data; therefore, training in approaches to assessment of risk should be a priority. To achieve improvement on risk governance, the importance of policy development and the roles of all participants should be clear. Proposals for future research cover the many aspects that comprise trust in governance and the increased awareness of consumers and stakeholders of environmental risks and food safety. This study also paves a way for research on governance of phytopesticides and phytomedicines because of growing interest in these rich sources of new information that could be of great benefit to mankind.
Thesis (PhD)--University of Pretoria, 2013.
gm2014
Paraclinical Sciences
Unrestricted

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27

Welz, Pamela Jean. "Microscopic evaluation of activated sludge from eleven wastewater treatment plants in Cape Town, South Africa / Pamela Welz". Thesis, North-West University, 2008. http://hdl.handle.net/10394/2982.

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From June to November 2007, a microscopic analysis was conducted on the activated sludge from eleven selected wastewater treatment plants (WWTP's) belonging to the City of Cape Town. The primary objective was the identification of the dominant and secondary filamentous organisms. Other important criteria included were the floe character, diversity, filament index (Fl) and identification of the protozoan and metazoan communities. The operational data determined from routine analyses of the sludge, influent and effluent were used to assess the relationship of the filamentous population to wastewater characteristics and to compare this with previous findings. Fl values of >3 and dissolved sludge volume indices (DSVI's) of >150 were chosen as representing the possibility of bulking conditions being present. The five most prevalent dominant filaments were Type 0092, Type 1851, actinomycetes, Microthrix parvicella and Type 021N, being present in 74%, 31%, 22%, 17% and 14% of samples respectively. Type 0092 did not appear to be associated with bulking in any of the WWTP's, although it was often incidentally present as a co-dominant species when bulking conditions existed. All three WWTP's with the Modified Ludzack-Ettinger configuration harboured Type 1851 as the major dominant species, irrespective of whether the plants treated domestic or industrial effluent. Conditions suggestive of bulking were present in two of these WWTP's. Contrary to expectations, Type 1851 was often found as a dominant species where domestic waste was the primary influent. Type 021N and actinomycetes were strongly implicated when bulking occurred. The overgrowth of these filaments appeared to be related to factors such as nutrient deficiency (Type 021N) or the presence of large amounts of low molecular weight substances in the influent. Microthrix parvicella did not cause major bulking problems. There was a strong association between low levels of nitrates/nitrites in the clarifier supernatant and good phosphorous removal, irrespective of the configuration of the WWTP. The converse was also true.
Thesis ((M. Environmental Science))--North-West University, Potchefstroom Campus, 2009.

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28

Ellender, Bruce Robert. "Ecological consequences of non-native fish invasion in Eastern Cape headwater streams". Thesis, Rhodes University, 2014. http://hdl.handle.net/10962/69065.

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The introduction, spread and concomitant impacts of non-native species are a global problem. Fish are among the most widely introduced vertebrate groups, with their impacts affecting multiple levels of organisation- from individuals, populations and communities, to entire ecosystems. In South Africa, the largest perceived threat to range-restricted endemic headwater stream fishes is said to be invasion by non-native fishes, however, as is the case elsewhere, invasive impacts are often a case of risk perception rather than actual risk analysis. Two range-restricted headwater species, the Eastern Cape redfin Pseudobarbus afer and the Border barb Barbus trevelyani are redlisted by the International Union for the Conservation of Nature (IUCN) as ‘Endangered’, primarily due to invasion by non-native fishes. To investigate invasions in South Africa, and provide a quantitative estimate of the impact of non-native fishes on the two imperilled endemics, P. afer and B. trevelyani, the overall aims of this thesis were to: (A) Provide a literature review on non-native fish invasions in South Africa; (B) Using two case studies on the headwaters of the perennial Keiskamma and episodic Swartkops River systems, investigate the naturalisation-invasion continuum to provide a holistic view of the invasion process in these variable environments. The specific thesis objectives were: (1) Reviewing current knowledge of invasive impacts of non-native fishes in South Africa; (2) Investigating invasibility of headwater stream environments by non-native fishes; (3) Determining the establishment success of non-native fishes, (4) Assessing the spatial and temporal impacts of invasion; (5) Understanding mechanisms responsible for non-native fish impacts; (6) Investigating the threat of non-native fish invasion on the genetic diversity of two the two headwater fishes, P. afer and B. trevelyani. Results from the literature review of fish invasions (Chapter 1) showed that South Africa has a long history of non-native fish introductions, spanning two and a half centuries. Currently, 55 species have been introduced or translocated. Many of these introduced species have become fully invasive (36%). Their impacts also span multiple levels of biological organisation. There was a general paucity of studies on fish invasions (38 studies), however, of those conducted, reviewed studies placed emphases on invasive impacts (25 studies) and the transport, introduction, establishment and spread stages of the invasion process were largely ignored. The two study systems, the Swartkops and Keiskamma Rivers, were heavily invaded and numbers of introduced species surpassed that of natives (Chapter 2, 3 and 5). Headwater streams had varying invasibility and a number of non-native species were successfully established (Chapter 2, 3, 5 and 6). The remainder of the invasions were casual incursions into headwater streams from source populations in mainstream and impoundment environments which were invasion hotspots. Irrespective of establishment, four predatory invaders (largemouth bass Micropterus salmoides, smallmouth bass M. dolomieu, brown trout Salmo trutta and rainbow trout Oncorhynchus mykiss) impacted heavily on native fish communities (Chapter 3, 4 and 5). Two broad types of invasion were documented, top down invasion by non-native O. mykiss and S. trutta and upstream invasion by M. salmoides and M. dolomieu (Chapter 3 and 5). Their impacts included changes in community structure, extirpation from invaded stream reaches resulting in contracted distribution, and isolation and fragmentation of native fish populations. The impacts of non-native predatory fishes were particularly acute for P. afer and B. trevelyani. Where non-native predatory fish occurred, P. afer and B. trevelyani had been extirpated (Chapter 3 and 5). As a result both native species exhibited contracted distributions (>20% habitat loss due to invasion). Upstream invasion by centrarchids isolated and fragmented P. afer populations into headwater refugia, while top down invasion by salmonids excluded B. trevelyani from invaded, more pristine stream reaches, by forcing the species into degraded unsuitable lower stream reaches. Predation also disrupted population processes such as adult dispersal for P. afer, and centrarchid-invaded zones acted as demographic sinks, where adults dispersing through invaded reaches were rapidly depleted. While the Mandela lineage of P. afer exhibited little within or between drainage genetic structuring, B. trevelyani was >4% divergent between drainages, and up to 2% divergent between streams within the Keiskamma River system (Chapter 7). The distribution of genetic diversity for B. trevelyani also indicated that the loss of diversity was imminent without immediate conservation interventions. This thesis has provided conclusive evidence that native fishes are vulnerable to invasion and that non-native predatory fishes have significant impacts on native fishes in Eastern Cape headwater streams. If management and conservation measures are implemented, the unwanted introduction and spread of non-native fishes may be restricted, allowing native fishes opportunities for recovery.

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29

Hill, Jaclyn Marie. "A stable isotope approach to trophic ecology resolving food webs in intertidal ecosystems". Thesis, Rhodes University, 2008. http://hdl.handle.net/10962/d1005459.

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There are broad differences in regional oceanography and primary production around the South African coast, which we might expect to give rise to major differences in trophic pathways. δ⁻¹³C and δ⁻¹⁵N isotopic ratios of suspended particulate matter (SPM), mussels, various intertidal consumers and common macroalgae along the South African coastline were explored using stable isotope analysis to investigate biogeographic and temporal variability of isotopic signatures of marine intertidal consumers and their food sources around the coast of South Africa, with a focus on evaluating the dependence of intertidal mussels on phytoplankton and macroalgal-derived organic carbon. Isotopic equilibration rates of four mussel tissues were determined through laboratory feeding experiments, which established that adductor tissue had the slowest isotopic turnover rate, and was subsequently used as an indication of overall mussel diet. Biogeographic, temporal and nearshore/offshore trends of isotopic ratios of SPM were investigated along 10km transects perpendicular to the coast and SPM exhibited overall trends of carbon depletion when moving from west to east along the coastline and from nearshore to offshore water, in both cases suggesting a shift from macrophyte detritus to a phytoplankton signature. δ⁻¹³C signatures of SPM also revealed temporal and biogeographic variation that had strong ties to local oceanography, being closely correlated to regional hydrographic features and tidal influences. Mixing models indicated filter feeders demonstrated over 50% dependence on nearshore SPM for organic carbon and it was possible to categorize them into geographic groups based on their carbon and nitrogen signatures, suggesting biogeographic shifts in resources. Biogeographic shifts in diet were also seen in some grazers. Difficulties in relating macroalgae to mussel diet led to investigations into the isotopic changes associated with macroalgal decomposition. Variation in photosynthetic fractionation, leaching and microbial mineralization are believed to have resulted from species-specific patterns of degradation. Although the strong links between carbon signatures and local oceanography indicate that stable isotope analysis is a powerful tool for the study of water mixing and coastal hydrography in relation to food-web analyses, substantial variation in fractionation of primary consumers, along with different periods of time integration between consumers and their food sources must be considered in future studies, to resolve trophic links in marine food webs successfully.

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30

Matumba, Tshifhiwa Given. "Genetics and thermal biology of littorinid snails of the genera Afrolittorina, Echinolittorina and Littoraria (Gastropoda: Littorinidae) from temperate, subtropical and tropical regions". Thesis, Rhodes University, 2013. http://hdl.handle.net/10962/d1001953.

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Abstract (sommario):

With the anticipated effects of climate change due to global warming, there is concern over how animals, especially ectotherms, will respond to or tolerate extreme and fluctuating environmental temperature stress. Littorinid snails are intertidal ectotherms that live high on the shore where they experience both extreme and variable conditions of temperature and desiccation stress, and are believed to live close to their tolerance limits. This study investigated the thermal biology of littorinid snails of the genera Afrolittorina, Echinolittorina and Littoraria from temperate, subtropical and tropical regions in South Africa and Brunei Darussalam using thermal tolerance, heart function, and proteome approaches. The effects of conditions, such as rate of change in temperature, acclimation, heat shock, season and starvation were also tested. In addition, the evolutionary relationships and genetic diversity between and within the South African Afrolittorina spp. were investigated using mitochondrial and nuclear markers. Genetic results confirmed that these are two distinct species, with the brown to black A. knysnaensis predominant in the cool-temperate region of South Africa and the pale blue-grey A. africana in the subtropical region. There was low genetic variation and differentiation within each species, suggesting high gene flow among populations as a result of the effects of ocean currents on the dispersal of their planktotrophic larvae. Tests using exposure to high temperatures revealed differences in the thermal tolerances, heart performance and protein profiles of species from different latitudes, regions and zones on the shore. Thermal tolerance conformed to expectations, with clear, statistically significant trends from high tolerance in subtropical species to lower tolerance in temperate species. However, for Afrolittorina spp., there were no significant differences in the thermal tolerances of conspecifics from different regions, though there was a significant difference in thermal tolerance between juveniles and adults. Overall, adults of all species showed higher thermal tolerances than juveniles. Although lethal temperatures for these species were higher in summer than winter, laboratory acclimation had no effect on heat coma temperatures. All species showed some regulation of heart rate, with a degree of independence of heart rate from temperature across mid-range temperatures. The tropical species showed quick induction and good regulation of heart rate followed by the subtropical and temperate species, which displayed mixed responses including regulation, partial regulation and lack of regulation. Overall, tropical Echinolittorina spp. showed good regulation, while the subtropical E. natalensis and Littoraria glabrata exhibited a mixture of partial regulation and regulation. The subtropical/temperate Afrolittorina spp. showed high individual variability, some animals exhibiting regulation, while others did not. These effects seem to be largely phylogenetically determined as there were no differences in the heart rate responses of Afrolittorina spp. from different regions. The temperatures at which heart rate became independent of temperature (thermoneutral zone) were within the range experienced under natural conditions. In addition, there were differences in Arrhenius breakpoint and endpoint temperatures, showing a trend from higher in tropical animals to lower for temperate animals. Conditions such as acclimation, heat shock and starvation had little or no effect on heart performance. However, a slow increase in temperature induced good regulation of heart rate with noticeable shifts of breakpoints and endpoints for Afrolittorina spp. Lastly, there were differences in the proteome responses between and within Afrolittorina spp. as a function of species, size and treatment. Although both large and small A. knysnaensis had a greater number of protein spots in their proteome than A. africana (though the difference was not significant), the later showed significantly higher differential expression of certain proteins following heat stress. In addition, juveniles of both species displayed greater numbers of protein spots in their proteome than adults. The results indicate a difference in the physiological and biochemical responses (i.e. adaptations) of these snails to temperature, and this seems to relate to differences in biogeography, phylogeny, species identity and ecology. The ability to regulate heart rate is phylogenetically determined, while thresholds and lethal limits correspond to biogeography and species ecology. The proteome seems to correspond to species ecology. The results also indicate that these littorinids can tolerate high temperature stress and in this respect they are well suited to life in the intertidal zones or habitats where temperature and other stresses or conditions are extreme and can change abruptly. However, the limited ability of these snails to acclimate to different temperatures suggests that they are already living close to their tolerance limits with small safety margins or narrow thermal windows and so may be vulnerable to small rises in substratum temperature and/or solar radiation.

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31

Maweya, Sizeka. "Microbiological profile of organisms causing bloodstream infections between 2004 and 2016 in a tertiary hospital Limpopo province South Africa". Diss., University of Pretoria, 2017. http://hdl.handle.net/2263/65837.

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Background: Nosocomial bloodstream infections constitute a significant public health problem and may be an important cause of morbidity and mortality in patients who are hospitalized. The presence of living microorganisms in the blood of a patient is usually indicative of a serious invasive infection requiring antimicrobial therapy. Mortality associated with bloodstream infections may range from 20 to 50% and depends on several factors, including pathogen and host factors. Many septic episodes are nosocomial and may be due to microorganisms with increased antimicrobial resistance. Aim: This study describes the microbiological profile of the organisms, and their resistance to antibiotics, causing bloodstream infections in patients in a tertiary hospital in Limpopo between 2004 to 2006 and 2014 to 2016. Methods: This was a retrospective laboratory-based serial cross-sectional study of 219 cultures in 2004 to 2006 73 of which were positive and 1095 cultures in 2014 to 2016 298 of which were positive. Data, including patient demographics (age, gender), microbial species (as recorded in the blood culture reports) and the antibiograms of isolated microorganisms, was collected and analysed. Results: 371 blood culture results which were culture positive were analysed. Coagulase negative staphylococci 190 (51.2%), Acinetobacter baumannii 14 (4%), Klebsiella pneumonia 44 (11.9%), Enterococcus spp 23 (6.2%). Enterobacter spp 19 (5.1%), Staphylococcus aureus 21 (7.3%), and Escherichia coli 14 (3.8%) were predominant. The constitution of bacteria cultures isolated where gram status was known, was gram-positive 262 (70.6%) and gram-negative 106 (28.6%). Among the S. aureus isolates, extended-spectrum beta lactamase (ESBL) positivity was 27 (7.3%). The microorganisms exhibited a level of resistance against the following antimicrobials: (colistin, imipenem, linezolid, meropenem and vancomycin). Conclusions: There was an increase in the numbers of tests, and hence the numbers of isolates, between the two study periods. The study demonstrated that there was a less than 3% drug resistance level, against antibiotics tested for, in both time periods. There was no clinically significant change in the resistance levels between the first and second study periods.
Dissertation (MSc)--University of Pretoria, 2017.
School of Health Systems and Public Health (SHSPH)
MSc
Unrestricted

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32

Dredge, Brendon Neville. "An assessment of the invasion state and fisheries suitability in four dams and a natural lake in the Western Cape, South Africa". Thesis, Rhodes University, 2016. http://hdl.handle.net/10962/69114.

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Despite more than a century of introductions, fish invasions are poorly understood in South Africa. This thesis aims to: (1) provide baseline information on the fish fauna in five inland water bodies (four dams: Theewaterskloof, Clanwilliam, Quaggaskloof, and Voelvlei and a natural lake, Groenvlei) in the Western Cape; (2) determine which species were established and provide a baseline of abundance and size structure for monitoring and, (3) make preliminary recommendations for a fishery. First, criteria for determining establishment were developed by undertaking a full biological assessment of bluegill Lepomis macrochirus, a data-poor species in South Africa. This included the assessment of growth rate using validated estimates of age derived from otoliths in two dams (Clanwilliam Dam: Lt=335.9(1−eo.113(t+1.06)); Groenvlei: Lt=287.2(1-e−0.171(t+0.54)). Length at 50% maturity was similar for males (146 mmFL) and females (147 mmFL). Length frequency analysis combined with data on the age and growth and reproduction demonstrated that established populations of bluegill contained several age cohorts as well as mature and juvenile fishes. A meta-analysis was conducted to: (1) compile a list of initial stocking dates for all alien fishes in each waterbody and (2) use angler tournament data to assess for additional species and persistence over time. Data from the meta-analysis was combined with ichthyological survey data to determine establishment success. These data demonstrated that nine non-native species had established in the five water bodies. Clanwilliam Dam had the largest number (7) of non-native species established, Groenvlei (5) and Theewaterskloof, Brandvlei and Voelvlei the lowest with four species. The state of invasion of each species in the province showed that all nine species are categorised as invasive. This information on establishment was then integrated into a framework for rapidly determining what type of fishery would be most suitable for the 5 waterbodies. Potential yield was estimated using morphoedaphic models, were 260 t/yr for Theewaterskloof Dam, 93 t/yr for Voelvlei, 81 t/yr for Brandvlei, 59 t/yr for Groenvlei and 55 t/yr for Groenvlei. The CPUE for Groenvlei was the highest in gill nets with 1.32 ± 1.94 kg/h, then Voelvlei 1.05 ± 1.34 kg/h followed by Brandvlei (0.84 ± 1.48 kg/h), Clanwilliam (0.71 ± 1.55 kg/h) and lastly Theewaterskloof (0.36 ± 0.41 kg/h). Only Theewaterskloof could produce in excess of 100 t/yr but less than 400 t/yr of fish making it suitable for a small scale fishery. The CPUE values of Theewaterskloof were the lowest and a gill net fishery on this water body may not produce sufficient fish for the fishery. All water bodies had a high recreational angling usage, the opening of a small scale fishery could be detrimental to this industry. Subsistence and recreational anglers should be promoted with the possibility of a long line industry targeting Clarias gariepinus.

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33

Dabrowski, James Michael. "Prediction and ecotoxicological effects of runoff induced pesticide contamination in agricultural surface waters : a risk assessment using GIS and microcosms". Thesis, Stellenbosch : Stellenbosch University, 2001. http://hdl.handle.net/10019.1/52409.

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Thesis (MSc)--Stellenbosch University, 2001.
ENGLISH ABSTRACT: Runoff is generally regarded as one of the most important routes of nonpoint source pesticide pollution in agricultural surface waters. Of major concern is the fact that low, sub-lethal levels of pesticide exposure are responsible for negative ecotoxicological effects, stressing the need for methods capable of identifying problem areas where populations could be at risk. Predicted average losses of three pesticides in tributaries of nine sub-catchments of the Lourens River were calculated through use of a GIS-based runoff model. There was a significant (p < 0.005) positive correlation between the predicted average loss and mean measured concentrations of the insecticides both in water and suspended sediments (R2 between 0.75 and 0.9), indicating that the model could serve as a powerful tool for the risk assessment and management of surface waters in South African orchard areas. Based on field relevant exposure scenanos, the potential effects of azinphos-methyl on macroinvertebrate communities were evaluated in a combined microcosm and field approach. Microcosms were contaminated for 1 h with AZP (control, 0.2; 1,5and 20 ug/L; three replicates each) and acute effects on survival were evaluated 6 days after exposure. The sensitivity or tolerance of 12 core taxa was determined based on their response to the exposure scenarios and compared to field tolerance/sensitivity as was established by a field investigation at a control and contaminated site of the Lourens River. The sensitivity/tolerance of ten of the 12 taxa corresponded to that which was found in the field. Thus microcosm studies employing a field relevant design can be successfully linked to field studies and indicate that transient pesticide contamination affects the aquatic communities of the Lourens River.
AFRIKAANSE OPSOMMING Afloop word oor die algemeen beskou as een van die belangrikste roetes van niepuntbron pestisiedbesoedeling in landbou oppervlakwaters. Die feit dat lae, sub-letale vlakke van pestisiedblootstelling negatiewe ektoksikologiese gevolge kan hê, is van groot belang. Dit beklemtoon die behoefte aan metodes om probleemgebiede te kan identifiseer waar bevolkings aan risiko onderhewig is. 'n GIS-gebaseerde afloopmodel is gebruik om die gemidddelde verlies van drie pestisiede in die sytakke van nege sub-opvangsgebiede van die Lourensrivier te voorspel. Daar was 'n beduidende (p < 0.005) positiewe korrelasie tussen die voorspelde gemiddelde verlies en gemete konsentrasies van insektisiede in beide die water en sediment (R2 between 0.75 and 0.9) fases, wat aandui dat die model as 'n kragtige hulpmiddel vir risikobestuur van oppervlakwaters in Suid Afrikaanse boord-gebiede kan dien. Die potensiële gevolge van azinfos-rnetiel (AZP) op makroinvertebraat gemeenskappe is deur middel van 'n gekombineerde mikrokosmos (wat op veldrelevante blootstellings gebaseer is) en veldbenadering bepaal. Mikrokosmosse is vir 1 h met AZP gekontamineer (kontrole; 1; 0.2; 1; 5 en 20 ~g1L; drie replikate elk), en die akute gevolge op oorlewing is ge-evalueer na ses dae van blootstelling. Die sensitiwiteit of toleransie van 12 sleutel taksa is deur middel van hulle respons op die blootstellingsreeks bepaal, en met hulle veldtoleransie/sensitiwiteit vergelyk wat in 'n veldstudie by 'n kontrole- en gekontamineerde gebied in die Lourensrivier bepaal is. Die sensitiwiteit/toleransie van 10 van die 12 taksa in die mikrokosmos eksperimente het ooreengestem met die wat in die veld gevind is. Mikrokosmosstudies wat op 'n veldrelevante ontwerp gebaseer is, kan dus suksesvol aan veldstudies gekoppel word, en dui aan dat oorgedraagde pestisiedkontaminasie die akwatiese gemeenskap van die Lourensrivier beinvloed.

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34

Kruger, Anne-liese. "The use of Sentinel Organisms to evaluate the health of metal contaminated forest ecosystems in the Western Cape, South Africa". Thesis, Cape Peninsula University of Technology, 2019. http://hdl.handle.net/20.500.11838/2881.

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Thesis (DPhil (Environmental Health))--Cape Peninsula University of Technology, 2019.
Chronic exposure to high levels of metals in the environment can cause severe damage to ecosystems and human health. The City of Cape Town, an immense contributor to atmospheric pollution lies beneath the Table Mountain range, one of the Seven Wonders of the World and renowned for its biodiversity and ancient, indigenous forests, yet no plan exist to monitor metal concentrations. These ecosystems are subjected to considerable metal inputs all year round, which greatly increases during brown haze episodes in winter. Soil, leaf litter, moss, lichen and millipedes are key organisms in forests and reliable indicators for determining critical loads and preventing broader impacts to forests, which leads to the main purpose of this study: to determine the health of metal-contaminated forest ecosystems in the western cape, the smallest biome in South Africa, yet of utmost importance to our environment and ultimately human health. The objectives of this study were a) to determine concentrations of prominent metals in soil, leaf litter and sentinel organisms in a pilot study b) to compare the dry and wet season with regard to: (i) seasonal fluctuations of the concentrations of the metals (ii) the oxidative stress effect of metals, using two markers indicative of induced oxidative stress (oxidative lipid damage products and glutathione (total GSH levels) in the pill millipede, Spaerotherium compressum, the moss, Hypnum cupressiforme and the lichen, Parmotrema sp. and c) to expose millipedes to metal contaminated soil for a period of six weeks: (i) to determine whether they accumulated metals and (ii) to assess the induced oxidative damage to lipids and redox status of glutathione in the pill millipede, Spaerotherium compressum. Three sampling sites in three afromontane forests in the Western Cape, Platbos, Orange Kloof and Newlands forest formed the study area. Five subsamples of soil, leaf litter and each sentinel organism were collected and chemically analysed to determine the metal concentrations, using an Inductively Coupled Plasma Mass Spectrophotometer (ICP–MS). The oxidative stress effect was determined in freeze dried samples. Millipedes were exposed in terrariums to a cocktail of metals Al, Fe and Mn for six weeks at control, low and high concentrations and analysed thereafter. Significant (P<0.05) findings in this study were the metal contamination patterns observed at the sites and forests in closest proximity of the City of Cape Town and related pollutant sources, especially vehicle volumes, and traffic behaviour. Even more significant (P<0.05) was the enhanced metal concentrations found during winter in the forest in closest proximity of the city, impacted by the brown haze phenomena. Metals may further have triggered an overproduction of ROS (reactive oxygen species) judging from the activated antioxidant, tGSH levels in an effort to scavenge ROS, as well as the MDA (malondialdehyde) levels (measured as TBARS), which indicated damage to cells. An important finding was that MDA levels were mostly higher in winter during the brown haze episodes signifying more damage in the organisms during that season. A programme to monitor metals in these forests was also suggested in view of a concern for the survival of forests and human health, as a result of the growing population, vehicle traffic and urbanization.

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35

Modinger, Heinrich. "Micro-organisms involved in iron oxidation and acid mine drainage formation in KwaZulu-Natal and their control by soil covers on coal waste dumps". Thesis, Stellenbosch : Stellenbosch University, 1998. http://hdl.handle.net/10019.1/55926.

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Thesis (MSc)--Stellenbosch University, 1998.
One copy microfiche.
ENGLISH ABSTRACT: The biologically catalysed oxidation of pyrite in the outer layers of coal waste dumps leads to the formation of acid mine drainage. The oxidation of pyrite to ferric iron and sulphate is a complex process involving various abiotic and biologically catalysed reactions. Pyrite is abiotically oxidized by ferric iron, with the formation of thiosulphate and ferrous iron. Thiosulphate decomposes to form various inorganic sulphur compounds. Bacterial catalysis of pyrite oxidation is achieved by iron-oxidizing bacteria oxidizing ferrous iron to ferric iron. Bacteria that oxidize sulphur compounds assist the catalysis by oxidizing thiosulphate and its decomposition products. Heterotrophic organisms may play a role by consuming organic substances inhibitory to the lithotrophic bacteria. Abiotic ecological factors, acid formation and populations of iron-oxidizing bacterial groups were studied in 10 differently constructed pilot scale coal waste dumps, as the second phase of a study which started in September 1993. Gas samples were withdrawn weekly from coal waste through permanently buried stainless steel probes, for analysis in the field using a portable oxygen/carbon dioxide meter. Samples of coal waste were extracted by auger for analysis of moisture, pH and microbial populations. The analyses of oxygen and pH can be recommended for the routine monitoring of rehabilitated waste dumps. Covers of Avalon soil 0.3 or 0.5 m thick, were not adequate to prevent acidification. Coal waste covered with 0.7 m compacted beneath 0.3 m uncompacted Avalon soil, showed a slow pH decline, but reached approximately pH 3 in 1997. Covers of compacted Estcourt soil beneath tmcompacted Avalon soil to a cover depth of 1 m were effective in preventing acidification and generally kept the coal waste anaerobic. However, all covers developed cracks during drought conditions in 1995, allowing aeration. Low pH of some samples from these dumps during 1995/1996 may have indicated the start of acidification. Bacteria oxidizing high concentrations of ferrous iron and considered to be Thiobacillus ferrooxidans, were monitored routinely, but may not have been the dominant iron-oxidizer, as population counts using media with a lower ferrous iron concentration were higher. The majority of the latter organisms could also not oxidize sulphur, hence were not T. ferrooxidans. The populations of the high ferrous iron-oxidizing bacteria were affected by pH, tending to be high in acidified and low in non-acidified coal waste. Investigations of microbial populations forming iron-oxidizing consortia in enrichment cultures from coal waste and acid drainage samples showed the presence of T. ferrooxidans, the heterotrophic bacterial genus Acidiphilium, fungi of the genus Penicillium, unidentified filamentous fungi, including Cladophialophora-like morphological types, and a yeast of the genus Dipodascus. In interaction studies, the Penicillium isolate had an inhibitory effect on T. ferrooxidans (subjected to organic compound stress), but the Cladophialophora-like fungi reduced inhibition by organics. Fungi have not previously been studied in detail as components of iron-oxidizing consortia, but the bacterial isolations agree with those elsewhere, indicating that appropriate conclusions from acid mine drainage research in other parts of the world can be applied in KwaZulu-Natal.
AFRIKAANSE OPSOMMING: Die biologies gekataliseerde oksidasie van piriet in die buitenste lae van steenkoolafvalhope lei tot die vorming van suur mynafloopwater. Die oksidasie van piriet tot ferri-yster en sulfaat is 'n komplekse proses wat abiotiese en biologies gekataliseerde reaksies insluit. Piriet word abioties deur ferri-yster geoksideer, met die vrystelling van tiosulfaat en ferro-yster. Tiosulfaat verval om verskeie anorganiese swawelverbindings te vorm. Bakteriese katalise van pirietoksidasie word deur ysteroksiderende bakteriee wat ferro-yster na ferri-yster oksideer, bewerkstellig. Bakteriee wat swawelverbindings oksideer maak 'n bydrae tot die katalise deur tiosulfaat en vervalprodukte daarvan te oksideer. Heterotrofe organismes mag ook 'n rol speel deur organiese verbindings wat die litotrofe bakteriee mag inhibeer, te verbruik. Abiotiese ekologiese faktore, suurvorming en bevolkings ysteroksiderende bakteriee is in 10 verskillend gekonstrueerde loodsskaal steenkoolafvalhope bestudeer, as die tweede fase van 'n studie wat in September 1993 begin het. Gas monsters is weekliks uit die steenkoolafval onttrek deur vlekvrye staal peilers wat permanent daarin begrawe is, en met behulp van 'n draagbare suurstoflkoolstofdioksiedanaliseerder in die veld ontleed. Monsters van die steenkoolafval is met behulp van 'n kleiboor vir die analise van vog, pH en mikrobepopulasies geneem. Die analise van suurstof en pH kan aanbeveel word vir die roetiene monitering van gerehabiliteerde afvalhope. Bedekkings van 0.3 of 0.5 m Avalongrond was nie voldoende om suurvorming te verhoed nie. Steenkoolafval wat met 0.7 m gekompakteerde en 0.3 m ongekompakteerde Avalongrond bedek is, het 'n stadige pH-daling getoon, maar het in 1997 ongeveer pH 3 bereik. Bedekkings van gekompakteerde Estcourtgrond onder ongekompakteerde A valongrond met 'n totale dikte van 1 m, was effektief in die voorkoming van suurvorming. Hulle het oor die algemeen die steenkoolafval anaerobies gehou, maar aile bedekings het tydens die droogte in 1995 krake ontwikkel, wat suurstof laat binnedring het. 'n Lae pH gedurende 1995/1996 by sommige monsters uit hierdie hope mag die begin van suurvorming aangedui het. Bakteriee wat hoe konsentrasies ferro-yster oksideer en wat as Thiobacillus ferrooxidans beskou is, was moontlik nie die dominante ysteroksideerder nie, aangesien bevolkingstellings waar 'n medium met 'n laer konsentrasie ferro-yster gebruik is, hoer bevolkings getoon het. Die meerderheid van laasgenoemde organismes kon ook nie swawel benut nie en dus nie T. ferrooxidans was nie. Die bevolkings van die hoe ferro-ysteroksiderende bakteriee is deur pH beInvloed, met 'n geneigdheid tot hoe bevolkings in suur en lae bevolkings in minder suur steenkoolafval. Ondersoeke na die rnilcrobebevollcings wat in ysteroksiderende konsortia in verryldngslculture vanaf steenkoolafval- en suur mynafloopwatermonsters voorgekom het, het die teenwoordigheid van 7'. ferrooxidans, die heterotrofe balcteriegenus Acidiphilium, fungi van die genus Penicillium, ongeIdentifiseerde fungi, insluitend Cladophialophora-agtige tipes en 'n gis van die genus Dipodascus aangetoon. By interaksiestudies het die Penicillium-isolaat 'n inhiberende effek op T ferrooxidans (onderworpe aan organiese verbindingstres) gehad, maar die Cladophialophora-agtige fungi het die inhibisie deur organiese verbindings verminder. Fungi is nog the in detail as komponente van ysteroksiderende konsortia bestudeer the, maar die isolasies van bakteried stem saam met die van elders wat aandui dat toepaslike gevolgtreldcings ten opsigte van suur mynafloopwatemavorsing vanaf ander dele van die wereld ook in KwaZulu-Natal toegepas kan word.

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36

Van, Tonder Nicolaas Christiaan Petrus. "Seed treatment of maize, sorghum and sunflower with effective micro- organisms". Thesis, [Bloemfontein?] : Central University of Technology, Free State, 2012. http://hdl.handle.net/11462/141.

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Thesis (M. Tech. Agriculture) -- Central University of Technology, Free state, 2012
A series of incubation studies and greenhouse experiments were conducted to evaluate the use of EM seed treatments, at different application levels, handling techniques and soil conditions on germination and seedling vigour of selected cultivars of maize, sorghum and sunflower. Two incubation studies were conducted to evaluate the germination and seedling vigour of maize, sorghum and sunflower seeds treated with M-EM from three different suppliers, multiplied at two different ratios (1% and 3%) and diluted at three different levels (0.01%, 0.1% and 1.0%) compared to a control treated with pure water. Results revealed no significant differences under optimum germination conditions, while seedlings under cold stress indicated that M-EM treatments positively affected germination and seedling vigour compared to the control treatments. Two incubation studies were also conducted to evaluate the germination and seedling vigour of maize, sorghum and sunflower seeds treated with M-EM from three different suppliers, multiplied at two different ratios (1% and 3%) and exposed to the influences of irradiation and temperature fluctuation. From the results became clear that the correct storage and handling is essential in optimizing the effect of M-EM on seeds. Even though M-EM was exposed to irradiation and temperature fluctuation, M-EM still had positive effects on germination and seedling vigour. Pot experiments were conducted to determine the effect of EM as seed treatment, at different dilutions, on germination, seedling vigour and dry mass of maize, sorghum and sunflower at different planted depths. Germination were not affected by the M-EM treatment, while shoot length results indicated that seed treated with M-EM could have significant effect on seedling survival. A greater effect was visible on the shoot length of shallow planted seeds, than on deeper planted seeds. From the results no single company, ratio or dilution could be prescribed as paramount. To further investigate the effect of M-EM subjected to the influences of irradiation and temperature fluctuation; maize, sorghum and sunflower seeds were treated with M-EM from three different suppliers, multiplied at two different ratios (1% and 3%) and exposed to the influences of irradiation and temperature fluctuation and planted in soil. M-EM treatments only benefited the germination of deeper planted sorghum seeds compared to the control treatments. The shoot lengths of deeper planted maize and sunflower seed were positively increased by the M-EM treatments while also resulting in significant results for the overall shoot length of sorghum. The third pot study was conducted to determine the influence of EM as a seed treatment on maize, sorghum and sunflower planted in three different soils, namely: sterilized soil, soil treated with M-EM and Fusarium containing soil. Germination and seedling vigour results of the sterilized and M-EM treated soil revealed to be superior to that of the Fusarium containing soil. From the results was concluded that M-EM treatments will probably improve early seedling growth of maize, sorghum and sunflower compared to untreated seed and that M-EM seed treatment and a pre-plant EM soil treatment might assist seeds in unfavourable germination and growth conditions.

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37

Smit, Nellie Jacoba. "A qualitative study of selected micro-organisms in geophagic soil from Qwa-Qwa". Thesis, Bloemfontein : Central University of Technology, Free State, 2011. http://hdl.handle.net/11462/165.

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Thesis (M. Tech.(Biomedical Technology)) - Central University of technology, Free State, 2011
The existence of geophagia from as early as 460 BC up to now, makes it relevant to investigate all aspects related to geophagia. Geophagia is a direct route for potential transmission of pathogens to the human host, through the ingestion of soil. Soil-borne diseases in humans are causing growing concern as sewage disposal, which involve sewage sludge and waste water drainage from these plants, is on the increase. It is estimated that approximately seven million tons of sewage sludge is produced annually and that 54% of this sewage sludge is introduced into soil. Data on enteric infection in humans caused by contamination from soil is limited and need further investigation. The aim of the study was, therefore, to collect information on the microbiological presence in geophagic soil in the Qwa-Qwa district. Objectives included the collecting of information regarding various sampling sites in the Qwa-Qwa district and also soil samples sold by vendors, investigation of the prevalence of known human pathogenic bacteria and fungi in geophagic soil, investigating the culturability of Salmonella enteritidis in geophagic soil in comparison with the viability of these organisms in soil for long periods of time, investigating potential antimicrobial activity of geophagic soil, as some of the geophagists are convinced that the geophagic soils have medicinal properties, and to determine the microbial diversity of geophagic soils, which can not be accomplished by conventional microbial culturing methods.

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38

Diaz, Diaz Eliecer Rodrigo. "Hierarchical spatial structure and levels of resolution of intertidal grazing and their consequences on predictability and stability at small scales". Thesis, Rhodes University, 2009. http://hdl.handle.net/10962/d1005393.

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The aim of this research was to assess three hierarchical aspects of alga-grazer interactions in intertidal communities on a small scale: spatial heterogeneity, grazing effects and spatial stability in grazing effects. First, using semivariograms and cross-semivariograms I observed hierarchical spatial patterns in most algal groups and in grazers. However, these patterns varied with the level on the shore and between shores, suggesting that either human exploitation or wave exposure can be a source of variability. Second, grazing effects were studied using manipulative experiments at different levels on the shore. These revealed significant effects of grazing on the low shore and in tidal pools. Additionally, using a transect of grazer exclusions across the shore, I observed unexpected hierarchical patchiness in the strength of grazing, rather than zonation in its effects. This patchiness varied in time due to different biotic and abiotic factors. In a separate experiment, the effect of mesograzers effects were studied in the upper eulittoral zone under four conditions: burnt open rock (BOR), burnt pools (Bpool), non-burnt open rock (NBOR) and non-burnt pools (NBpool). Additionally, I tested spatial stability in the effects of grazing in consecutive years, using the same plots. I observed great spatial variability in the effects of grazing, but this variability was spatially stable in Bpools and NBOR, meaning deterministic and significant grazing effects in consecutive years on the same plots. Both the significance in grazing effects and spatial stability depended on the level of resolution (species, functional, biomass) at which the algal assemblage was evaluated, suggesting hierarchical variability. In order to be able to predict spatial variability in the effects of grazers in the upper eulittoral zone using biotic and abiotic micro- and macrofactors, a conceptual model was proposed, based on data from several multiple-regressions. This linked the interactions among three elements: idiosyncratic heterogeneity, micro and macrofactors. This suggests that spatial variability can be a product of these factors, while spatial stability can be caused by the same or different combinations of factors. In conclusion, grazing and other ecological phenomena must be studied hierarchically, not only through spatiotemporal scales, but also at different levels of resolution, as these also influence our perception of patterns.

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39

Vermeulen, Ilke. "Feeding dynamics of suspension-feeders in the nearshore marine environment adjacent to two contrasting estuaries in the Eastern Cape, South Africa". Thesis, Rhodes University, 2012. http://hdl.handle.net/10962/d1016242.

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Coastal transition zones form important interlinking regions where marine ecosystems, rivers and estuarine environments significantly influence each other. Coastal rocky shores are key habitats that sustain a variety of primary producers and invertebrates and due to the dynamic nature of coastal ecosystems, suspension-feeders on rocky shores can be influenced by an array of autochthonous and allochthonous food sources. Fatty acid and stable isotope trophic markers were employed to distinguish between regional and temporal changes in the potential food sources to rocky shore suspension-feeders in the Eastern Cape Province of South Africa. The primary aim was to assess the spatial and temporal influences of contrasting river flows on the available food sources to three indigenous coastal suspensionfeeders, namely the volcano barnacle Tetraclita serrata, brown mussel Perna perna and tubebuilding polychaete Gunnarea capensis. This was done by examining the intra- and interspecific changes in the fatty acid and stable isotope signatures of the barnacles, mussels and polychaetes in the adjacent marine environment of a freshwater-restricted (Kariega) and freshwater-dominated (Great Fish) estuary during austral summer and winter. Multivariate and Kruskal-Wallis analyses of variance on the fatty acid and isotopic signatures, respectively, identified significant regional changes in the barnacles and mussels, while only stable isotopes distinguished between the Kariega and Great Fish polychaetes (P < 0.05). In addition, significant temporal changes were observed in consumer fatty acids and isotope values in both regions (P < 0.05). Bacterial sources, detritus and phytoplankton assemblages, which are influenced by hydrology and vegetation, differed between regions and were mainly responsible for the regional and temporal separations. Principal component analyses on the consumer fatty acid signatures distinguished between animals situated upstream (i.e. north) and downstream (i.e. south) of the Kariega Estuary mouth in summer. The north/south separation was mainly due to greater contributions of diatoms to northernlocated animals and dinoflagellates and detritus to southern-located consumers. In addition, the south-flowing Agulhas Current on the eastern shores of southern Africa appeared to influence the north/south separation in the Kariega region, as water leaving the estuary was probably entrained into the south-easterly flowing currents, thereby depositing estuarinederived detritus to southern populations. In general, diatoms and detritus were essential food sources to the filter-feeders in summer, and flagellates, diatoms, zooplankton and detritus were important in winter. Coastal macroalgae was a key food source in the Kariega and Great Fish regions during both seasons. Consistently large levels of diatom markers (16:1n-7 and 20:5n-3) and dinoflagellate markers (22:6n-3) in consumer tissues in the Kariega and Great Fish regions identified that phytoplankton was their dominant food source. The barnacles, mussels and polychaetes had similar fatty acid markers and a fairly narrow δ¹³C range (-16.5 to -14.4 ‰), suggesting that they probably consumed similar food. Carbon isotope analyses, however, separated the suspension-feeders into slightly depleted (barnacles; -16.5 to -16.1 ‰), intermediate (mussels; -15.8 to -15.0 ‰) and enriched (polychaetes; -15.0 to -14.4 ‰) consumers, but did not provide conclusive evidence of their preferences for specific phytoplankton. Conversely, fatty acid analyses highlighted that barnacles and mussels had greater proportions of dinoflagellate markers (22:6n-3; 7.0-15.3 % TFA), while polychaetes had larger diatom levels (20:5n-3; 15.1-22.2 % TFA). In addition, all three species had consistently large contributions from bacterial fatty acids (15:0, i-16:0, 17:0 and i-18:0; 4.2-13.6 % TFA) in summer and winter, and large proportions of saturated fatty acids (33.3-53.1 % TFA) including those with 14 to 18 carbons, indicating that bacterial and detritus food sources played an important role in their diets. Barnacles had small levels of terrestrial markers (18:2n-6 and 18:3n-3; <2.5 % TFA) and demonstrated increased omnivorous feeding compared with the other suspension-feeders [increased levels of 20:1n-11 and 20:1n-9, higher 18:1n-9/18:1n-7 ratios at ~2.1, enriched δ¹⁵N values at ~10.6 ‰; zooplankton (potentially including microzooplankton, larvae and protists) contribution of up to 61 % of the diet]. Mussels contained significant proportions of the terrestrial markers (18:2n-6 and 18:3n-3; >2.5 % TFA) and exhibited intermediate omnivory (intermediate levels of 20:1n-11 and 20:1n-9, intermediate 18:1n-9/18:1n-7 ratios at ~1.3, less enriched δ¹⁵N values at ~7.9 ‰; zooplankton contribution of 10-15 % of the diet). The more depleted nitrogen signatures in the mussels relative to the barnacles and polychaetes possibly illustrated a stronger preference for autotrophic food. Polychaetes mainly consumed plant food sources (i.e. microalgae, macroalgae and detritus; high levels of i-18:0, 18:1n-9, 18:4n-3 and 20:5n-3) and displayed little omnivory (low levels of 20:1n-11 and 20:1n-9, low 18:1n-9/18:1n-7 ratios at ~0.4, intermediate δ¹⁵N values at ~9.1 ‰; zooplankton contribution of <10 % of the diet). The barnacles, mussels and polychaetes are all suspension-feeders, originally presumed to consume the same food sources. The variations observed among the species, therefore, may result from differences in the proportional contributions of the various food sources to their diets as well as distinctions in metabolism. The distinct changes in the fatty acid and stable isotope signatures in all three filter-feeders in the Kariega and Great Fish regions are likely influenced by the diversity in regional vegetation and hydrology in the different systems, combined with interspecific differences in resource partitioning among the species.

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40

Lado, Thomas Francis. "Molecular ecology of introduced species in South Africa : the bud gall-forming wasp Trichilogaster acaciaelongifoliae and the Argentine ant Linepithema humile". Thesis, Stellenbosch : Stellenbsoch University, 2008. http://hdl.handle.net/10019.1/4840.

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Thesis (PhD)--Stellenbosch University, 2008.
ENGLISH ABSTRACT: Introduced species displace native species and alter ecological communities, affect agriculture as well as human health and are economically costly to eradicate. Long term monitoring of introduced species including the documentation of levels of genetic variation is therefore of the utmost importance. This study investigated the distribution of genetic variation in two introduced species distributed across South Africa the bud gall-forming wasp Trichilogaster acaciaelongifoliae and the Argentine ant Linepithema humile. The bud gall-forming wasp was introduced into South Africa as a biological control agent to curb the spread of the invasive long-leaved wattle Acacia longifolia. In addition to the intended (target) host, the bud gall-forming wasp has also colonised A. floribunda, a noninvasive ornamental plant. Limited genetic variation was found across South Africa based on the mitochondrial DNA cytochrome oxidase subunit I (COI) gene. Only 3 haplotypes characterized 53 individuals collected from 23 localities (nucleotide diversity £k = 0.002 ¡Ó 0.001, haplotype diversity h = 0.482 ¡Ó 0.045). No significant partitioning of genetic variation was found across South Africa including between host plants (target host = A. longifolia, non target host = A. floribunda) or between the core (sites of introduction) and edge (naturally dispersed) sites (ƒ¶ST = 0.094, P = 0.288). The limited genetic variation and the absence of significant genetic structure are congruent with patterns described for many other introduced species and may suggest that propagule pressure plays only a minor role in species establishment and spread of the gall-forming wasp across South Africa. Mitochondrial and nuclear markers were used to describe the distribution of genetic variation within Argentine ants across their introduced range in South Africa. For the mitochondrial DNA, low genetic diversity was found for the COI gene with only five haplotypes, separated by single mutational changes, characterizing 101 specimens from 35 localities (nucleotide diversity π = 0.001 ± 0.001, haplotype diversity h = 0.151 ± 0.048). Notwithstanding the low levels of genetic diversity, mitochondrial variation was significantly structured (ST = 0.54, P < 0.001) across the landscape. In contrast, microsatellite analyses of 230 ants from 23 localities, employing six polymorphic microsatellite markers, revealed a relatively high amount of genetic diversity (HE = 0.51 ± 0.22). Significant population structure was similarly evident (RST = 0.14, P < 0.001) with the localities of Elim2, Porterville2 and Bloemfontein2 clustering as a distinct population from the remainder of the localities. Importantly, individuals from these localities also had a unique mitochondrial haplotype and, when taken with the nuclear results, may indicate the occurrence of more than one introduction event (and possibly more than one colony) in South Africa. This is further underscored by the presence of unique microsatellite alleles in these three populations. In an attempt to establish the source populations for the introduction of Argentine ants into South Africa, mitochondrial cytochrome b sequences were generated for a subset of ants representing the two major genetic clades across South Africa. A comparison with the published data from across the world including the native range of the Argentine ant in South America grouped Argentine ants from South Africa with three potential source populations namely Ocampo and Rosario in Argentina and Passo do Lontra in Brazil. The results of this study underscore the role of human-mediated dispersal in shaping the levels of genetic variation in both species. Human-mediated dispersal can lead to genetic homogenization across populations.
AFRIKAANSE OPSOMMING: Indringer spesies verplaas of verander ekologiese gemeenskappe, beinvloed landbou asook menslike gesondheid en is ekonomies duur om te verwyder. Langtermyn monitering van indringer spesies asook die dokumentasie van genetiese variasie is dus baie belangrik. Hierdie studie bestudeer die verspreiding van genetiese variasie in twee indringer spesies wat regoor Suid-Afrika voorkom, naamlik die kroongal-vormende wespe Trichilogaster acaciaelongifoliae en die Argentynse mier Linepithema humile. Die kroongal-vormende wesp is na Suid Afrika gebring as biologiese beheeragent om die verspreiding van indringer lang-blarige wattle Acacia longifolia te beveg. Die kroongalvormende wespe het sowel die teiken spesies, asook A. floribunda, ‘n nie-indringer ornamentele plant gekoloniseer. Beperkte genetiese variasie is gevind regoor Suid Afrika gebasseer op die mitochondriale DNA sitokroom-oksidasie subeenheid I (COI) geen. Slegs 3 haplotipes karakteriseer 53 indiviue van 23 bevolkings (nukleotied diversiteit π = 0.002 ± 0.001, haplotiep diversiteit h = 0.482 ± 0.045). Geen beduinde groepering van genetiese variase is gevind regoor Suid Afrika nie (ST = 0.094, P = 0.288). Hierdie bevinding geld onafhanklik van die gasheer plant (teiken gasheer = A. longifolia, nie-teiken gasheer = A. floribunda). Ook is geen beduidende genetiese groepering gevind tussen die sentrale (plek van inisiele blootstelling) en perifêre (natuurlik verspreide) lokaliteite nie. Die kleinskaalse genetiese variase en die afwesigheid van beduidende genetiese struktuur wat hier gevind is, verskil van die patrone wat voorheen vir baie ander indringer-spesies beskryf is. Dit mag daarop dui dat ‘propagule’ druk slegs ’n klein rol speel in spesies-vestiging en verspreiding van die galvormende wespe regoor Suid-Afrika. Mitochondriale asook kern merkers is gebruik om die verspreiding van genetiese variasie in Argentynse miere in Suid Afrika te beskryf. Vir die mitochondriale DNA is lae genetiese variase gevind vir die COI geen, met slegs 5 haplotipes, gedifferensieer deur enkele mutasie veranderinge wat 101 monsters van 35 lokaliteite karakteriseer (nukleotied diversiteit π = 0.001 ± 0.001, haplotiep diversiteit h = 0.151 ± 0.048). Desondanks die lae genetiese variasie, is gevind dat mitochondriale variasie beduidend gestruktureerd is (ST = 0.54, P < 0.001) oor die landskap. Hierteenoor het mikrosatelliet analises van 230 miere van 23 lokaliteite, deur gebruik te maak van ses polimorfiese mikrosatelliet merkers, ’n relatiewe hoë hoeveelheid genetiese diversiteit aangedui. Beduidende bevolkingstruktuur was ook gevind (RST = 0.14, P < 0.001) in die areas Elim2, Porterville2 en Bloemfontein2 wat saam groepeer as eiesoortige bevolkings vergeleke met die res van die areas. Ook van belang is dat individue van die areas ’n unieke mitochondriale haplotipe besit, en in kombinasie met die kern resultate, mag dit die voorkoms van meer as een blootstellingsgeleentheid (en moontlik meer as een kolonie) in Suid Afrika aandui. Hierdie bevinding word verder beklemtoon deur die teenwoordigheid van unieke mikrosatelliet allele in die drie bevolkings. In ‘n poging om die oorsprong van die oorsprong-bevolking vir die blootstelling van Argentynse miere in Suid Afrika vas te stel, is mitochondriale sitokroom b volgordes gegenereer vir ’n substel miere wat die twee hoof genetiese klades in Suid Afrika voorstel. Vergelyking met gepubliseerde data van regoor die wêreld, insluitende die endemiese gebied van die Argentynse mier in Suid Amerika, het die Argentynse mier van Suid Afrika met drie potensiele oorsprong-bevolking verbind, naamlik Ocampo en Rosario in Argentina en Passo do Lontra in Brazil.

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41

Brink, Kerry Anne. "Effects of DDT on aquatic organisms in the Luvuvhu River". Thesis, 2012. http://hdl.handle.net/10210/6124.

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Ph.D.
The toxicant dichlorodiphenyl-trichloroethane, commonly known as DDT, is a broad spectrum insecticide and is currently banned in most countries due to its toxic effects. However, in some countries restricted use of DDT has been authorized as an effective vector control within malarial control programmes. South Africa is one such country, where spraying of DDT occurs in three provinces including the Limpopo Province, KwaZulu Natal and Mpumalanga. Specifically in the Limpopo Province, spraying of DDT has been ongoing for almost 56 years within the eastern malaria belt of the province. Despite this long term spraying there is still a scarcity of data regarding DDT and its effects on indigenous aquatic organisms in South Africa. Any research regarding DDT will therefore be of the utmost value. It was in this context that the present study was initiated, which primarily aimed to assess the extent of contamination within DDT sprayed areas in South Africa and the associated effects on indigenous species, whilst identifying techniques that could be used in future monitoring of these areas. This assessment was done in the Luvuvhu River catchment at three reference sites and four exposure sites situated within the areas where indoor residual spraying of DDT is done annually. At these sites the extent of DDT contamination within the water, sediment and biota (using the bioindicator pecies C. gariepinus from only the lentic sites) in the Luvuvhu river was evaluated. The results showed that DDT concentrations were well above recommended levels in all three of the measured phases, with the highest concentrations predominantly observed at the Xikundu weir. This site was particularly impacted by DDT due to a combination of its close proximity to the DDT sprayed areas, concentration accumulation from upstream sources and environmental conditions that accentuated contamination. These elevated levels of DDT did, however, not induce significant quantifiable effects in the bioindicator C. gariepinus or in the fish and macro-invertebrate community structures. Specifically, the effects in the catfish, C. gariepinus, were assessed using a range of biomarkers specific to the endocrine disrupting effects of DDT, including indirect measures of vitellogenin (calcium, zinc, magnesium and alkali-labile phosphate (ALP) that are all present on the VTG molecule in high abundances), gonad-somatic index (GSI), condition factor (CF), analysis of covariance (ANCOVA) manipulated gonads, protein carbonyls (PC) and intersex. Although none of these biomarkers could be significantly correlated with the DDT contaminations, DDT was shown to induce a slight sub-organismal effect by slightly inducing the synthesis of ALP and Ca as well as reducing the gonad mass (shown by GSI and adjusted gonad mass biomarkers) and body condition. In contrast, the fish and macroinvertebrate communities showed no conclusive relationship with DDT contamination, using a variety of methodologies, including informal assessments, univariate diversity indices, multivariate statistics, abundance models, fish response assessment index (FRAI) as well as average score per taxon (ASPT) and Ephemeroptera, Plecoptera and Trichoptera (EPT) richness. In conclusion, it was shown that DDT concentrations within the Luvuvhu River only induced effects at the lower levels of complexity, which highlights the importance of the utilisation of biomarkers to measure more subtle long-term effects as compared to the usage of community level effects.

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42

Strachan, Kate Leigh. "Application of intertidal salt-marsh foraminifera to reconstruct late Holocene sea-level change at Kariega Estuary, South Africa". Thesis, 2013. http://hdl.handle.net/10413/10030.

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Unclear predictions surrounding climate change, associated sea-level rise and potential impacts upon coastal environments have placed an emphasis on the importance of sea-level change. Past sea-level fluctuations have been measured using biological and geomorphological forms of evidence. One such biological proxy is salt-marsh foraminifera, which have been used as a high-resolution indicator of past sea-level change, based on the assumption that surface foraminiferal assemblages are similar in composition to buried fossil foraminifera. In South Africa, there is ongoing research seeking to produce high-resolution records of sealevel change, however foraminifera remain an underutilized source of proxy evidence. This research applies salt-marsh foraminifera as precise indicators of relative sea-level change at Kariega Estuary on the Eastern Cape coastline of South Africa. Distributions of modern foraminiferal assemblages were investigated, revealing vertical zonation across the intertidal zone. The foraminiferal and marsh vegetation zones were in part similar and overlapped to a certain extent, identifying three zones; high, low and tidal flats. This suggested foraminiferal distribution is a direct function of elevation relative to tidal fluctuation. A 94 cm core consisting of peat, sand and clay sediments was extracted from the salt marsh. A chronological framework for the core was based on five AMS radiocarbon age determinations of both bulk sediment and shell fragment samples placing the record within the last 1500 years Before Present (BP). The basal shell age was a clear outlier to all bulk sediment ages, possibly as a result of shell recrystallisation. The bulk sediment age determinations suggested two possible age reversals, potentially linked to sedimentary hiatus or contamination. These inconsistencies in the chronology were best viewed as separate age models. The core was analysed at a high resolution, whereby fossil foraminifera were extracted every 2 cm’s down the core. A transfer function was applied to calculate the former elevation at which each core sample once existed, to produce a relative sea-level reconstruction. The reconstruction was related to the age models to produce two possible sea-level curve scenarios. Reconstructed curves from both scenarios depict a 0.5 m (±0.16 m) sealevel highstand at 1500 cal years BP followed by a lowstand of -0.6 m (±0.03 m). Scenario One reached its lowest recorded sea-level between 600 cal years BP and 500 cal years BP and then fluctuated below present day levels. Scenario Two reached its lowest recorded sea-level around 1200 cal years BP, followed by low amplitude fluctuations and a relatively stable period from 100 cal years BP till the present day. The 1500 cal years BP highstand recorded for both scenarios correlates well with existing palaeoenvironmental literature from the southern African coastline. Chronological limitations associated with the remainder of the record hinder inter-comparison with previous studies. The outcomes of this research suggest that intertidal saltmarsh foraminifera demonstrate enormous potential for the high-resolution reconstruction of relative sealevel change in the South African context.
Thesis (M.Sc.)-University of KwaZulu-Natal, Pietermaritzburg, 2013.

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43

Nakin, Motebang Dominic Vincent. "Effects of marine reserves on the biology of rocky intertidal limpets along the southern coast of South Africa /". 2008. http://eprints.ru.ac.za/1617/.

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44

Masikane, Ntuthuko Fortune. "Development of a sediment toxicity test for the South African coastal environment using the endemic amphipod, Grandidierella lignorum Barnard 1935 (Amphipoda: Aoridae)". Thesis, 2013. http://hdl.handle.net/10413/11225.

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Contaminants introduced in solution to coastal waters eventually accumulate in sediment. Pollution by these contaminants is only evident when biological effects occur. Geochemical procedures lack the ability to identify biological effects of pollution. Biological methods (i.e. community structure analyses and/or bioassays) are currently the best available techniques for pollution assessment. Standardised and locally relevant protocols for pollution assessment are lacking in many developing countries, including South Africa. This study aims to develop a sediment toxicity testing protocol using an amphipod species endemic to South Africa, Grandidierella lignorum. Initial research focussed on establishing ranges of physico-chemical parameters (i.e. salinity, temperature, sediment grain size and organic matter content) within which sediment toxicity tests should be performed. The sensitivity of the amphipod was then determined by exposing the amphipod to cadmium, copper and zinc at various salinities. Lastly, the amphipod was exposed to effluents (to test the amphipod’s sensitivity in water only tests) and whole sediment (to tests the amphipod’s sensitivity to solid phase material). G. lignorum tolerates salinities between 0 and 56, but prefers salinities between 7 and 42. Preferred salinity range is modified by temperature, with salinity of 42 becoming less tolerable. Salinities between 7 and 35 are most preferred at 10-25°C. G. lignorum prefers fine- (27.48±12.13%), medium- (25.11±12.99%) and coarse-grained sand (21.45±8.02%). Sediment with low (≤2%) organic matter content is most preferable, regardless of sediment grain size or type of organic matter (protein-rich vs. carbohydrate-rich). Cadmium toxicity decreased with increasing salinity (LC₅₀: 0.34 ± 0.17 mg l⁻¹ (salinity of 7), 0.73 ± 0.05 mg l⁻¹ (salinity of 21) and 1.08 ± 0.49 mg l⁻¹ (salinity of 35)). Zinc toxicity increased with decreasing salinity (1.56 ± 0.33 mg l⁻¹ at a salinity of 21 to 0.99 ± 0.13 mg l⁻¹ at a salinity of 7) and with increasing salinity (from salinity of 21 to 0.82 ± 0.19 mg l⁻¹ at a salinity of 35). Copper toxicity did not differ significantly with salinity and ranged between 0.72 ± 0.18 mg l⁻¹ (salinity of 35) and 0.89 ± 0.24 mg l⁻¹ (salinity of 21). Toxicity testing using Grandidierella lignorum should be performed in coarse- to fine-grained sediment at salinities of 7 - 35, at 10 – 25°C. Amphipods do not need to be fed during toxicity testing. A control chart using cadmium as a reference toxicant was established to determine the acceptability of toxicity results. Toxicity test results should be accepted when cadmium toxicity falls between 0.49 and 4.02 mg l⁻¹. The amphipod responded consistently to effluents and was able to discriminate polluted and unpolluted sediment in Durban Bay. Recommendations for refining the effluent and sediment toxicity test are suggested.
Ph.D. University of KwaZulu-Natal, Durban 2013.

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45

Malakane, Karabo Concelia. "Assessment of the impact of water and sediment quality on aquatic macroinvertebrate assemblages in the Blyde River of the Olifants River System, Limpopo Province". Thesis, 2019. http://hdl.handle.net/10386/2938.

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Thesis (M.Sc. (Zoology) -- University of Limpopo, 2019
The Olifants River is one of the major river systems in South Africa, providing water for industries, mines, agricultural and domestic activities. Consequently, the river has turned out to be one of the most polluted rivers in South Africa. The Blyde River is an important tributary of the Olifants River, known for its continuous flow and good water quality. However, the recent increase in human activities such as, commercial agricultural and large-scale forestry practices in the catchment may have a negative impact on the quality of the water, which may consequently affect the aquatic biota community structure. The aim of the study was to assess the water and sediment quality of the Blyde River using aquatic macroinvertebrates as bioindicators and the South African Scoring System version 5 (SASS5) protocol was followed. Seven sampling sites were selected at Blyde River and five samples were collected per site. Collected macroinvertebrates were identified to family level and classified according to their tolerance levels to pollution at the University of Limpopo Biodiversity Laboratory. In addition, seasonal readings of the physico-chemical parameters such as, pH, dissolved oxygen (DO), temperature, salinity, total dissolved solutes (TDS) and electrical conductivity (EC) were recorded in situ using YSI Model 554 Datalogger with a 4 m multiprobe and a Mettler Toledo SevenGo™. Most of the physico-chemical parameters recorded at Blyde River were within the South African water quality guidelines for aquatic ecosystems. Metals such as, As, Al, Ba, B, Cd, Cr, Co, Cu, Fe, Pb, Mn, Ni, Se, Ag, Sr, Sn, Ti, V, and Zn were tested from the water column, sediments and macroinvertebrate tissue. Almost all the metals analysed from the water column and sediments were within the quality guidelines. Out of the twenty tested metals, As, Ag, Cu, and Zn exceeded the recommended quality guidelines in the water column at some sites. Only As, Cr and Cu exceeded the recommended quality guidelines in the sediments. The most abundant macroinvertebrates were from the orders Ephemeroptera, Diptera, and Trichoptera at all sites. There was a similar macroinvertebrate community structure across the sites, supported by the positive correlation analysis among the sites (r > 0.4). Wildlife Estate and Wildrivers Estate had the highest and lowest numbers of sensitive macroinvertebrates respectively. The highest percentage of iv sensitive macroinvertebrate taxa was recorded in winter and the highest percentage of tolerant species was recorded in summer. This was also supported by the SASS indices, the SASS score, number of taxa and average score per taxon (ASPT) were highest in winter, followed by autumn, spring and lowest in summer. The overall SASS indices showed that the water quality condition at most of the sites at Blyde River could be considered as good. All the seven sites on average fell under ecological band A and B, except for the Wildrivers Estate, thus, the water quality status of the river could be described as unmodified and largely natural with few modifications.
VLIR

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46

Gumede, Sabelo Victor. "Assessment and management of the impact of platinum mining on water quality and selected aquatic organisms in the Hex River, Rustenburg Region, South Africa". Thesis, 2012. http://hdl.handle.net/10210/8062.

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Ph.D.
Mining operations significantly influence the environment due to direct and indirect discharges of waste products into the aquatic systems. The primary aim of this study was to assess the current situation in the platinum mining area and develop a management plan to ensure that existing and potential environmental impacts caused by platinum mining and processing are mitigated. To do this, an assessment was carried out to investigate changes in critical aquatic invertebrate and fish community distributions and assess how they relate to measured environmental factors. Five sites were selected, one reference site which is upstream of heavy mining activities and four sites within heavy mining and processing activities. Standard techniques for water, sediment, invertebrate and fish sampling were used. Macro-invertebrates sampled were identified to family level whereas fish were identified to species level. Multivariate analysis used was cluster analysis by non-metric multidimensional scaling (NMDS) for both macro-invertebrates and fish. Three methods of ordination were used to analyze the biotic and abiotic data namely N-MDS, Correspondence Analysis (CA) and Canonical Correspondence Analysis (CCA). Cluster analysis of macro-invertebrates data revealed three major groups based on sampling period (low flow or high flow) and the last cluster according to the locality. Multidimensional scaling ordination of high and low flow for macro-invertebrate communities confirmed the groupings detected by cluster analysis. Cluster analysis for fish communities revealed two groups at 50% similarity; the first group is the combination of reference and exposure sites for both high and low flow sampling regimes. No fish were sampled at site 4 during both low and high flow regimes. Multidimensional scaling ordination of high and low flow fish communities confirmed the groupings detected by cluster analysis. Analysis using a similarity profile (SIMPROF) test indicated that fish communities are statistically (p=5%) the same. It was found that macro-invertebrates and fish respond differently to environmental variables.

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47

Singh, Prasheen. "The assessment of sediment contamination in an acid mine drainage impacted river in Gauteng (South Africa) using three sediment bioassays". Thesis, 2015. http://hdl.handle.net/10210/13851.

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M.Sc. (Zoology)
Sediment contamination occurs as a result of various anthropogenic activities; mainly through mining-, agricultural- and industrial practices. Many of the contaminants arising from these activities enter the aquatic system and precipitate from the surrounding water, binding to sediment particles. In the sediment compartment, these contaminants reach concentrations much higher than in solution with the overlying water. Even though the quality of the overlying water may prove acceptable in accordance to water quality uidelines, an aquatic system may still be at risk from the contaminated sediment. If the contaminated sediment were to be disturbed through flooding, bioturbation or changes in the water chemistry, these contaminants will desorb into the water column and as a result be detrimental to life forms in contact and dependent on that water source. Monitoring sediment has been a widespread initiative internationally and has led to the development of various sediment toxicity test methods, including different bioassays. This study focused on sediment bioassays such as the Phytotoxkit-F and Ostracodtoxkit-F, and the Diptera bioassay to assess the sediment quality of the Tweelopiespruit-Rietspruit-Bloubankspruit (TRB) river system in Gauteng, South Africa. This river is known to be impacted by acid mine drainage (AMD) since late August 2002. Exposure of the bioassays to river sediment from preselected sampling sites (Site 1, closest to the mine, to Site 6, furthest from the mine, and Site 7, the reference site) provided an eco-toxicological estimation of the acute toxicity emanating from contaminants in the sediment. Physico-chemical analyses revealed high concentrations of metals and other contaminants in the water and sediment. A general linear decrease in contaminant concentrations was observed from Site 1 to Site 6. The results from the bioassays displayed a similar trend, since there were greater sensitivities (mortalities and growth inhibition) to sediments sampled closer to the mine. Due to high levels of contamination in sediments, compared to the overlying water, and the potential impact on aquatic organisms, sediment toxicity monitoring should be a compulsory requirement for environmental studies in South Africa

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