Gotowe bibliografie tematyczne / Bipartite Genome

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Gotowa bibliografia na temat „Bipartite Genome”

Autor: Grafiati

Data publikacji: 3 czerwca 2025

Data aktualizacji: 31 lipca 2025

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Artykuły w czasopismach na temat "Bipartite Genome"

Madhu, Pearl R* Gopal Pandi &. Sundara Baalaji Narayanan. "INSILICO DESIGN OF SMALL INTERFERENCE RNA (SIRNA) FOR PREVENTION OF VIRAL (BEGOMOVIRUS) DISEASES IN COMMERCIALLY VALUABLE PLANTS (TOMATO AND PULSES)." INTERNATIONAL JOURNAL OF RESEARCH SCIENCE & MANAGEMENT 4, no. 7 (2017): 61–66. https://doi.org/10.5281/zenodo.831442.

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Yellow vein mosaic or yellow leaf curl disease in tomato, okra and other pulses is transmitted by Bemisia tabaci (White fly), leading to loss of production and quality. Gene silencing is one of the powerful approaches to overcome viral based plant diseases. However it is of great challenge to design potential small interfering RNA (siRNA) molecules against genes responsible for the diseases. From the primary sequence information, using insilico approach, 15 siRNAs were designed for genes involved in pathogenicity like suppressor, movement and nuclear shuttle namely V2, C2 and C4 of monopartite

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Leiva, Ana M., Jenyfer Jimenez, Hector Sandoval, Shirley Perez, and Wilmer J. Cuellar. "Complete genome sequence of a novel secovirid infecting cassava in the Americas." Archives of Virology 167, no. 2 (2022): 665–68. http://dx.doi.org/10.1007/s00705-021-05325-2.

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AbstractWe report the complete genome sequence of a field isolate of a novel bipartite secovirid infecting cassava in Colombia, provisionally named "cassava torrado-like virus" (CsTLV). The genome sequence was obtained using Oxford Nanopore Technology, and the 5’ ends were confirmed by RACE. The RNA1 is 7252 nucleotides (nt) long, encoding a polyprotein of 2336 amino acids (aa) containing the typical “replication block”, conserved torradovirus motifs, and a Maf/Ham1 domain, which is not commonly found in viral genomes. The RNA2 is 4469 nt long and contains two overlapping ORFs encoding protein

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Kondo, Hideki, Keisuke Hirota, Kazuyuki Maruyama, Ida Bagus Andika, and Nobuhiro Suzuki. "A possible occurrence of genome reassortment among bipartite rhabdoviruses." Virology 508 (August 2017): 18–25. http://dx.doi.org/10.1016/j.virol.2017.04.027.

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Lin, Junyan, Ahmed Khamis Ali, Ping Chen, et al. "A stem–loop structure in the 5′ untranslated region of bean pod mottle virus RNA2 is specifically required for RNA2 accumulation." Journal of General Virology 94, no. 6 (2013): 1415–20. http://dx.doi.org/10.1099/vir.0.051755-0.

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Bean pod mottle virus (BPMV) is a bipartite, positive-sense (+) RNA plant virus of the family Secoviridae. Its RNA1 encodes all proteins needed for genome replication and is capable of autonomous replication. By contrast, BPMV RNA2 must utilize RNA1-encoded proteins for replication. Here, we sought to identify RNA elements in RNA2 required for its replication. The exchange of 5′ untranslated regions (UTRs) between genome segments revealed an RNA2-specific element in its 5′ UTR. Further mapping localized a 66 nucleotide region that was predicted to fold into an RNA stem–loop structure, designat

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Chattopadhyay, Anirudha, A. Abdul Kader Jailani, Anirban Roy, Sunil Kumar Mukherjee, and Bikash Mandal. "Expanding Possibilities for Foreign Gene Expression by Cucumber Green Mottle Mosaic Virus Genome-Based Bipartite Vector System." Plants 13, no. 10 (2024): 1414. http://dx.doi.org/10.3390/plants13101414.

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Expanding possibilities for foreign gene expression in cucurbits, we present a novel approach utilising a bipartite vector system based on the cucumber green mottle mosaic virus (CGMMV) genome. Traditional full-length CGMMV vectors face limitations such as a restricted cargo capacity and unstable foreign gene expression. To address these challenges, we developed two ‘deconstructed’ CGMMV genomes, DG-1 and DG-2. DG-1 features a major internal deletion, resulting in the loss of crucial replicase enzyme domains, rendering it incapable of self-replication. However, a staggered infiltration of DG-1

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Xavier, César A. D., Márcio T. Godinho, Talita B. Mar, et al. "Evolutionary dynamics of bipartite begomoviruses revealed by complete genome analysis." Molecular Ecology 30, no. 15 (2021): 3747–67. http://dx.doi.org/10.1111/mec.15997.

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Yu, Qingbao, Jiayu Chen, Yuhui Du, et al. "A method for building a genome-connectome bipartite graph model." Journal of Neuroscience Methods 320 (May 2019): 64–71. http://dx.doi.org/10.1016/j.jneumeth.2019.03.011.

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Lanza, Val F., Fernando Baquero, Fernando de la Cruz, and Teresa M. Coque. "AcCNET (Accessory Genome Constellation Network): comparative genomics software for accessory genome analysis using bipartite networks." Bioinformatics 33, no. 2 (2016): 283–85. http://dx.doi.org/10.1093/bioinformatics/btw601.

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Ho, Eric S., Catherine M. Newsom-Stewart, Lysa Diarra, and Caroline S. McCauley. "gb4gv: a genome browser forgeminivirus." PeerJ 5 (April 12, 2017): e3165. http://dx.doi.org/10.7717/peerj.3165.

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BackgroundGeminiviruses (familyGeminiviridae) are prevalent plant viruses that imperil agriculture globally, causing serious damage to the livelihood of farmers, particularly in developing countries. The virus evolves rapidly, attributing to its single-stranded genome propensity, resulting in worldwide circulation of diverse and viable genomes. Genomics is a prominent approach taken by researchers in elucidating the infectious mechanism of the virus. Currently, the NCBI Viral Genome website is a popular repository of viral genomes that conveniently provides researchers a centralized data sourc

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Chiumenti, Michela, Claudia Greco, Angelo De Stradis, et al. "Olea Europaea Geminivirus: A Novel Bipartite Geminivirid Infecting Olive Trees." Viruses 13, no. 3 (2021): 481. http://dx.doi.org/10.3390/v13030481.

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In 2014, high-throughput sequencing of libraries of total DNA from olive trees allowed the identification of two geminivirus-like contigs. After conventional resequencing of the two genomic DNAs, their analysis revealed they belonged to the same viral entity, for which the provisional name of Olea europaea geminivirus (OEGV) was proposed. Although DNA-A showed a genome organization similar to that of New World begomoviruses, DNA-B had a peculiar ORF arrangement, consisting of a movement protein (MP) in the virion sense and a protein with unknown function on the complementary sense. Phylogeneti

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Rozprawy doktorskie na temat "Bipartite Genome"

Sedlář, Karel. "Metody pro komparativní analýzu metagenomických dat." Doctoral thesis, Vysoké učení technické v Brně. Fakulta elektrotechniky a komunikačních technologií, 2018. http://www.nusl.cz/ntk/nusl-391302.

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Moderní výzkum v environmentální mikrobiologii využívá k popisu mikrobiálních komunit genomická data, především sekvenaci DNA. Oblast, která zkoumá veškerý genetický materiál přítomný v environmentálním vzorku, se nazývá metagenomika. Tato doktorská práce se zabývá metagenomikou z pohledu bioinformatiky, která je nenahraditelná při výpočetním zpracování dat. V teoretické části práce jsou popsány dva základní přístupy metagenomiky, včetně jejich základních principů a slabin. První přístup, založený na cíleném sekvenování, je dobře rozpracovanou oblastí s velkou řadou bioinformatických technik.

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HSIEH, KUANG-CHIN, and 謝匡晉. "Drug target prediction based on similarity in chemical and genomic bipartite networks." Thesis, 2014. http://ndltd.ncl.edu.tw/handle/03503316338497585988.

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碩士<br>國立清華大學<br>資訊工程學系<br>102<br>In recently years, because the quantity of drug and human protein information increase quickly, the nova drug development has to face to large possible drug-target experiment pair. Therefore, the in silico prediction method become important step in drug development to cut down the cost and have raised much attention. Through those prediction methods that we can filter out the possible drug-target pair before actually conducting biological experiments or even human test. We proposed a new method based on network method and machine learning method to predict high

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Książki na temat "Bipartite Genome"

D, Harrison B., and Murant A. F, eds. Poly hedral virions and bipartite RNA genomes. Plenum Press, 1996.

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Harrison, B. D., and A. F. Murant. Plant Viruses: Polyhedral Virions and Bipartite RNA Genomes. Springer, 2013.

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Harrison, B. D. The Plant Viruses: Polyhedral Virions And Bipartite Rna Genomes. Springer, 2013.

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(Editor), B. D. Harrison, and A. F. Murant (Editor), eds. The Plant Viruses Volume 5: Polyhedral Virions and Bipartite RNA Genomes (The Viruses). Springer, 1996.

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Schöllhorn, Klaus Marcel. Die retropatellaren Druckverhältnisse bei verschiedenen Funktionsgraden des Kniegelenkes und ein Erklärungsversuch der traumatischen Genese der Patella bipartita. 1988.

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Części książek na temat "Bipartite Genome"

Darabos, Christian, and Jason H. Moore. "Genome-Wide Epistasis and Pleiotropy Characterized by the Bipartite Human Phenotype Network." In Methods in Molecular Biology. Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-2155-3_14.

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Harrison, B. D., and A. F. Murant. "Plant Viruses with Bipartite RNA Genomes and Polyhedral Particles." In The Plant Viruses. Springer US, 1996. http://dx.doi.org/10.1007/978-1-4899-1772-0_1.

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Hiruki, C. "The Dianthoviruses: A Distinct Group of Isometric Plant Viruses with Bipartite Genome." In Advances in Virus Research. Elsevier, 1987. http://dx.doi.org/10.1016/s0065-3527(08)60320-6.

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Goldbach, Rob, and Albert van Kammen. "Structure, Replication, and Expression of the Bipartite Genome of Cowpea Mosaic Virus." In Molecular Plant Virology. CRC Press, 2018. http://dx.doi.org/10.1201/9781351074780-3.

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Nayak, Anup Aurojyoti, and Stuti Kumari. "PROSPECTS OF TOBACCO RATTLE VIRUS (TRV) AS A VECTOR." In Futuristic Trends in Biotechnology Volume 3 Book 23. Iterative International Publishers, Selfypage Developers Pvt Ltd, 2024. http://dx.doi.org/10.58532/v3bdbt23p2ch4.

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Tobacco Rattle Virus is a plant-borne virus of the genus Tobravirus, which has a wide range of host species. Its unique characteristics and versatility have made it a highly sought-after tool in plant sciences and biotechnology. TRV is characterized by its bipartite genome structure, which is composed of two RNA1s and two RNA2s, allowing for the efficient insertion of foreign genes into RNA2 for gene delivery. Additionally, TRV is associated with the viral gene silencing phenomenon (VIGS), which involves the insertion of a fragment of the desired gene into the virus genome. This has become a u

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Shan, X., Z. Xue, and T. Melese. "Saccharomyces cerevisiae Npi46p." In Guidebook to Molecular Chaperones and Protein-Folding Catalysts. Oxford University PressOxford, 1997. http://dx.doi.org/10.1093/oso/9780198599494.003.00161.

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Abstract NPI46 was isolated by screening a AZAP yeast genomic expression library, using antiserum raised against yeast NLS-binding proteins (Shan et al., 1994). It encodes a protein of 411 amino acid residues with a molecular mass of 46 541 Da (Genbank accession number X79379). It was also identified as Fpr3, a protein that binds to FK520, a FK506-related immunosuppressant agent (Benton et al., 1994; Manning-Krieg etal., 1994). The C-terminal domain of Npi46p shares 45% identity with both human and yeast FKBP12. The N-terminal domain is highly charged, contains a bipartite NLS, and a number of

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Streszczenia konferencji na temat "Bipartite Genome"

Kang, Mingon, Juyoung Park, Dong-Chul Kim, Ashis K. Biswas, Chunyu Liu, and Jean Gao. "An integrative genomic study for multimodal genomic data using multi-block bipartite graph." In 2015 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2015. http://dx.doi.org/10.1109/bibm.2015.7359744.

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Moura, Filipe A. S., Carlos H. G. Ferreira, and Helen C. S. C. Lima. "Characterization of the Brazilian musical landscape: a study of regional preferences based on the Spotify charts." In Proceedings of the Brazilian Symposium on Multimedia and the Web. Sociedade Brasileira de Computação - SBC, 2024. http://dx.doi.org/10.5753/webmedia.2024.242290.

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In the digital age, streaming services such as Spotify have changed the way people consume music, highlighting the enormous influence these platforms have on the market. In the highly competitive music industry, it is crucial for independent artists in particular to maintain their popularity. This is especially true in countries like Brazil, where geographical and cultural differences influence music consumption patterns. Understanding these patterns is essential for effective marketing and production strategies. Despite previous research on music consumption, genre preferences and user behavi

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