Gotowe bibliografie tematyczne / De novo leaf transcriptome

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  1. Artykuły w czasopismach
  2. Rozprawy doktorskie
  3. Części książek
  4. Streszczenia konferencji
  5. Raporty organizacyjne

Gotowa bibliografia na temat „De novo leaf transcriptome”

Autor: Grafiati
Data publikacji: 3 czerwca 2025
Data aktualizacji: 31 lipca 2025

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Artykuły w czasopismach na temat "De novo leaf transcriptome"

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Salazar, Juan Alfonso, Cristian Vergara-Pulgar, Claudia Jorquera, et al. "De Novo Transcriptome Sequencing in Kiwifruit (Actinidia chinensis var. deliciosa (A Chev) Liang et Ferguson) and Development of Tissue-Specific Transcriptomic Resources." Agronomy 11, no. 5 (2021): 919. http://dx.doi.org/10.3390/agronomy11050919.

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Kiwifruit (Actinidia chinensis var. deliciosa (A Chev) Liang et Ferguson) is a sub-tropical vine species from the Actinidiaceae family native to China. This species has an allohexaploid genome (from diploid and autotetraploid parents), contained in 174 chromosomes producing a climacteric and fleshy fruit called kiwifruit. Currently, only a small body of transcriptomic and proteomic data are available for A. chinensis var. deliciosa. In this low molecular knowledge context, the main goal of this study is to construct a tissue-specific de novo transcriptome assembly, generating differential expr
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Kottapalli, Pratibha, Mauricio Ulloa, Kameswara Rao Kottapalli, Paxton Payton, and John Burke. "SNP Marker Discovery in Pima Cotton (Gossypium barbadense L.) Leaf Transcriptomes." Genomics Insights 9 (January 2016): GEI.S40377. http://dx.doi.org/10.4137/gei.s40377.

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The objective of this study was to explore the known narrow genetic diversity and discover single-nucleotide polymorphic (SNP) markers for marker-assisted breeding within Pima cotton ( Gossypium barbadense L.) leaf transcriptomes. cDNA from 25-day plants of three diverse cotton genotypes [Pima S6 (PS6), Pima S7 (PS7), and Pima 3-79 (P3-79)] was sequenced on Illumina sequencing platform. A total of 28.9 million reads (average read length of 138 bp) were generated by sequencing cDNA libraries of these three genotypes. The de novo assembly of reads generated transcriptome sets of 26,369 contigs f
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Sadat-Hosseini, Mohammad, Mohammad Reza Bakhtiarizadeh, Naser Boroomand, Masoud Tohidfar, and Kourosh Vahdati. "Combining independent de novo assemblies to optimize leaf transcriptome of Persian walnut." PLOS ONE 15, no. 4 (2020): e0232005. http://dx.doi.org/10.1371/journal.pone.0232005.

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Kaushik, Prashant, and Shashi Kumar. "Data of de novo assembly of the leaf transcriptome in Aegle marmelos." Data in Brief 19 (August 2018): 700–703. http://dx.doi.org/10.1016/j.dib.2018.05.095.

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Eguiluz, M., F. R. Kulcheski, R. Margis, and F. Guzman. "De novo assembly of Vriesea carinata leaf transcriptome to identify candidate cysteine-proteases." Gene 691 (April 2019): 96–105. http://dx.doi.org/10.1016/j.gene.2018.12.053.

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Vitiello, Alessia, Rosa Rao, Giandomenico Corrado, et al. "De Novo Transcriptome Assembly of Cucurbita Pepo L. Leaf Tissue Infested by Aphis Gossypii." Data 3, no. 3 (2018): 36. http://dx.doi.org/10.3390/data3030036.

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Zucchini (Cucurbita pepo L.), extensively cultivated in temperate areas, belongs to the Cucurbitaceae family and it is a species with great economic value. One major threat related to zucchini cultivation is the damage imposed by the cotton/melon aphid Aphis gossypii Glover (Homoptera: Aphididae). We performed RNA-sequencing on cultivar “San Pasquale” leaves, uninfested and infested by A. gossypii, that were collected at three time points (24, 48, and 96 h post infestation). Then, we combined all high-quality reads for de novo assembly of the transcriptome. This resource was primarily establis
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Claude, Sivagami-Jean, Gurusamy Raman, and Seon-Joo Park. "Comparative Analysis and Identification of Terpene Synthase Genes in Convallaria keiskei Leaf, Flower and Root Using RNA-Sequencing Profiling." Plants 12, no. 15 (2023): 2797. http://dx.doi.org/10.3390/plants12152797.

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The ‘Lilly of the Valley’ species, Convallaria, is renowned for its fragrant white flowers and distinctive fresh and green floral scent, attributed to a rich composition of volatile organic compounds (VOCs). However, the molecular mechanisms underlying the biosynthesis of this floral scent remain poorly understood due to a lack of transcriptomic data. In this study, we conducted the first comparative transcriptome analysis of C. keiskei, encompassing the leaf, flower, and root tissues. Our aim was to investigate the terpene synthase (TPS) genes and differential gene expression (DEG) patterns a
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Senn, Savanah, Ray A. Enke, Steven J. Carrell, et al. "De Novo Leaf Transcriptome Assembly and Metagenomic Studies of Coast Live Oak (Quercus agrifolia)." Applied Microbiology 5, no. 1 (2025): 24. https://doi.org/10.3390/applmicrobiol5010024.

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Coast Live Oak (Quercus agrifolia) is a native keystone hardwood species of the California coastal and semi-arid forest environment. Q. agrifolia is threatened by pathogens such as the oomycete Phytophthora ramorum, which is known to cause Sudden Oak Death in environments from Southern California to Oregon. This study considers oaks and their rootzone microbes recovering from moderate and low-intensity fires in rapid succession, compared to high- and low-intensity fires with a large time gap between them. cDNA libraries from nine oak leaf tissue samples were sequenced on DNBseq. Soil samples w
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Ma, Jikai, Lingmin Wei, Jiayu Li, and Huogen Li. "The Analysis of Genes and Phytohormone Metabolic Pathways Associated with Leaf Shape Development in Liriodendron chinense via De Novo Transcriptome Sequencing." Genes 9, no. 12 (2018): 577. http://dx.doi.org/10.3390/genes9120577.

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The leaf, a photosynthetic organ that plays an indispensable role in plant development and growth, has a certain ability to adapt to the environment and exhibits tremendous diversity among angiosperms. Liriodendron chinense, an ancestral angiosperm species, is very popular in landscaping. The leaf of this species has two lobes and resembles a Qing Dynasty Chinese robe; thus, leaf shape is the most valuable ornamental trait of the tree. In this work, to determine the candidate genes associated with leaf development in L. chinense, scanning electron microscopy (SEM) was employed to distinguish t
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Li, Peiling, Maofei Ren, Juanjuan Chen, et al. "Transcriptomic Analysis of Green Leaf Plants and White–Green Leaf Mutants in Haworthia cooperi var. pilifera." Genes 15, no. 5 (2024): 608. http://dx.doi.org/10.3390/genes15050608.

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Haworthia cooperi var. pilifera is a succulent plant with ornamental value. The white–green leaf mutant (wl) showed a significant difference in leaf color from the wild-type plant (WT). In this study, we integrated the transcriptomes of wl and WT plants to screen differentially expressed genes related to leaf color variation. The results of transcriptome analysis showed that 84,163 unigenes were obtained after de novo assembly and the NR database annotated the largest number of unigenes, which accounted for 57.13%, followed by NT (43.02%), GO (39.84%), Swiss-Prot (39.25%), KEGG (36.06%), and C
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Rozprawy doktorskie na temat "De novo leaf transcriptome"

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Der, Joshua, Michael Barker, Norman Wickett, Claude dePamphilis, and Paul Wolf. "De novo characterization of the gametophyte transcriptome in bracken fern, Pteridium aquilinum." BioMed Central, 2011. http://hdl.handle.net/10150/610016.

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BACKGROUND:Because of their phylogenetic position and unique characteristics of their biology and life cycle, ferns represent an important lineage for studying the evolution of land plants. Large and complex genomes in ferns combined with the absence of economically important species have been a barrier to the development of genomic resources. However, high throughput sequencing technologies are now being widely applied to non-model species. We leveraged the Roche 454 GS-FLX Titanium pyrosequencing platform in sequencing the gametophyte transcriptome of bracken fern (Pteridium aquilinum) to de
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Lafond, Lapalme Joël. "Étude et décontamination du transcriptome de novo du nématode doré Globodera rostochiensis." Mémoire, Université de Sherbrooke, 2016. http://hdl.handle.net/11143/8882.

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Le nématode doré, Globodera rostochiensis, est un nématode phytoparasite qui peut infecter des plantes agricoles telles la pomme de terre, la tomate et l’aubergine. En raison des pertes de rendement considérables associées à cet organisme, il est justifiable de quarantaine dans plusieurs pays, dont le Canada. Les kystes du nématode doré protègent les œufs qu’ils contiennent, leur permettant de survivre (en état de dormance) jusqu’à 20 ans dans le sol. L’éclosion des œufs n’aura lieu qu’en présence d’exsudats racinaires d’une plante hôte compatible à proximité. Malheureusement, très peu de conn
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Veselovská, Lenka. "Defining the oocyte transcriptome and its relationship to de novo DNA methylation." Thesis, University of Cambridge, 2015. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.709331.

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Meng, Arnaud. "Étude de la symbiose dans le plancton marin par une approche transcriptome et méta-transcriptome." Thesis, Paris 6, 2017. http://www.theses.fr/2017PA066478/document.

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Les relations symbiotiques entre organismes sont essentielles pour l’évolution de la bio- diversité et le fonctionnement des écosystèmes. En milieu terrestre ou en milieu marin benthique les symbioses sont assez bien décrites. Si dans le plancton marin, les relations entre hôtes hétérotrophes et symbiontes photosynthétiques sont des phénomènes observés dès le 19ème siècle, les mécanismes fonctionnels qui régissent ces symbioses restent largement inconnus. C’est le cas de la symbiose entre certaines espèces de radiolaires et leurs symbiontes dinoflagellés. Il s’agit d’un mode
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Meng, Arnaud. "Étude de la symbiose dans le plancton marin par une approche transcriptome et méta-transcriptome." Electronic Thesis or Diss., Paris 6, 2017. http://www.theses.fr/2017PA066478.

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Les relations symbiotiques entre organismes sont essentielles pour l’évolution de la bio- diversité et le fonctionnement des écosystèmes. En milieu terrestre ou en milieu marin benthique les symbioses sont assez bien décrites. Si dans le plancton marin, les relations entre hôtes hétérotrophes et symbiontes photosynthétiques sont des phénomènes observés dès le 19ème siècle, les mécanismes fonctionnels qui régissent ces symbioses restent largement inconnus. C’est le cas de la symbiose entre certaines espèces de radiolaires et leurs symbiontes dinoflagellés. Il s’agit d’un mode
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Tassone, Erica E., Gina Zastrow-Hayes, John Mathis, et al. "Sequencing, de novo assembly and annotation of a pink bollworm larval midgut transcriptome." BioMed Central, 2016. http://hdl.handle.net/10150/618722.

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Background: The pink bollworm Pectinophora gossypiella (Saunders) (Lepidoptera: Gelechiidae) is one of the world's most important pests of cotton. Insecticide sprays and transgenic cotton producing toxins of the bacterium Bacillus thuringiensis (Bt) are currently used to manage this pest. Bt toxins kill susceptible insects by specifically binding to and destroying midgut cells, but they are not toxic to most other organisms. Pink bollworm is useful as a model for understanding insect responses to Bt toxins, yet advances in understanding at the molecular level have been limited because basic ge
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Khan, Hamza. "De novo annotation of non-model organisms using whole genome and transcriptome shotgun sequencing." Thesis, University of British Columbia, 2016. http://hdl.handle.net/2429/60152.

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Fonseca, Natália Risso. "Etiology and de novo transcriptome analysis of the powdery mildew pathogen on Eucalyptus in Brazil." Universidade Federal de Viçosa, 2016. http://www.locus.ufv.br/handle/123456789/10763.

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Submitted by Reginaldo Soares de Freitas (reginaldo.freitas@ufv.br) on 2017-06-20T17:30:34Z No. of bitstreams: 1 texto completo.pdf: 1425926 bytes, checksum: ee624a74ef4a36d197d9316ae8fe4072 (MD5)<br>Made available in DSpace on 2017-06-20T17:30:34Z (GMT). No. of bitstreams: 1 texto completo.pdf: 1425926 bytes, checksum: ee624a74ef4a36d197d9316ae8fe4072 (MD5) Previous issue date: 2016-08-25<br>Conselho Nacional de Desenvolvimento Científico e Tecnológico<br>Oídio do eucalipto é uma importante doença que ocorre principalmente em casas de vegetação e minijardins clonais protegidos de eucali
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Pandreka, A. "De novo sequencing and analysis of transcriptome from azadirachta indica to characterize the genes involved in limonoid biosynthesis." Thesis(Ph.D.), CSIR-Institute of Genomics and Integrative Biology, New Delhi, 2018. http://dspace.ncl.res.in:8080/xmlui/handle/20.500.12252/5846.

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Smith, Emily. "De novo Transcriptome Analysis of the Marine Sponge Cinachyrella spp: A Potential Model Organism for Oil and Dispersant Ecotoxicology." NSUWorks, 2013. http://nsuworks.nova.edu/occ_stuetd/141.

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In order to study the potential effects of an oil spill on coral reef organisms, the marine sponge, Cinachyrella spp. was investigated. In this study, Cinachyrella spp. was placed in a closed aquaculture system and exposed to sub-lethal water-accommodated fractions (WAFs) of Macondo crude oil and chemically-enhanced water accommodated fractions (CE-WAFs) of the dispersant, Corexit 9500, over a 24-hour time course, in order to model the BP Deepwater Horizon oil spill and oil spill sponge response. Illumina RNA sequencing and gene expression analysis utilizing hierarchical clustering, principal
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Części książek na temat "De novo leaf transcriptome"

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Gutierrez-Gonzalez, Juan J., and David F. Garvin. "De Novo Transcriptome Assembly in Polyploid Species." In Methods in Molecular Biology. Springer New York, 2017. http://dx.doi.org/10.1007/978-1-4939-6682-0_15.

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Zhao, Jin, Haodi Feng, Daming Zhu, Chi Zhang, and Ying Xu. "IsoTree: De Novo Transcriptome Assembly from RNA-Seq Reads." In Bioinformatics Research and Applications. Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-59575-7_7.

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Avashthi, Himanshu, Jyotika Bhati, Shikha Mittal, et al. "Transcriptome Data Analysis Using a De Novo Assembly Approach." In Springer Protocols Handbooks. Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-2533-0_8.

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Santoni, Mariana Marchi, João Vítor Félix de Lima, Keylla Utherdyany Bicalho, et al. "Comparative Transcriptome Profiling of Maytenus ilicifolia Root and Leaf." In Advances in Bioinformatics and Computational Biology. Springer International Publishing, 2021. http://dx.doi.org/10.1007/978-3-030-91814-9_1.

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Córdoba-Caballero, José, Pedro Seoane-Zonjic, Manuel Manchado, and M. Gonzalo Claros. "De novo Transcriptome Assembly of Solea senegalensis v5.0 Using TransFlow." In Bioinformatics and Biomedical Engineering. Springer International Publishing, 2019. http://dx.doi.org/10.1007/978-3-030-17938-0_5.

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Li, Wei, and Yongfeng Guo. "RNA-Seq Analysis of the Transcriptome of Leaf Senescence in Tobacco." In Methods in Molecular Biology. Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-7672-0_27.

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Sadovsky, Michael, Yulia Putintseva, Vladislav Birukov, Serafima Novikova, and Konstantin Krutovsky. "De Novo Assembly and Cluster Analysis of Siberian Larch Transcriptome and Genome." In Bioinformatics and Biomedical Engineering. Springer International Publishing, 2016. http://dx.doi.org/10.1007/978-3-319-31744-1_41.

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Kerr, Stephanie C., Federico Gaiti, and Milos Tanurdzic. "De Novo Plant Transcriptome Assembly and Annotation Using Illumina RNA-Seq Reads." In Methods in Molecular Biology. Springer New York, 2019. http://dx.doi.org/10.1007/978-1-4939-9045-0_16.

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Peng, Yu, Henry C. M. Leung, S. M. Yiu, and Francis Y. L. Chin. "T-IDBA: A de novo Iterative de Bruijn Graph Assembler for Transcriptome." In Lecture Notes in Computer Science. Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-20036-6_31.

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Baharlouei, Sina, Meisam Razaviyayn, Elizabeth Tseng, and David Tse. "I-CONVEX: Fast and Accurate de Novo Transcriptome Recovery from Long Reads." In Communications in Computer and Information Science. Springer Nature Switzerland, 2023. http://dx.doi.org/10.1007/978-3-031-23633-4_23.

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Streszczenia konferencji na temat "De novo leaf transcriptome"

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Ghaffari, Noushin, Osama A. Arshad, Hyundoo Jeong, et al. "De novo transcriptome assemblies and annotation for pacifie whiteleg shrimp." In 2014 IEEE Global Conference on Signal and Information Processing (GlobalSIP). IEEE, 2014. http://dx.doi.org/10.1109/globalsip.2014.7032342.

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Sachdeva, V., C. S. Kim, K. E. Jordan, and M. D. Winn. "Parallelization of the Trinity Pipeline for De Novo Transcriptome Assembly." In 2014 IEEE International Parallel & Distributed Processing Symposium Workshops (IPDPSW). IEEE, 2014. http://dx.doi.org/10.1109/ipdpsw.2014.67.

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Zhiyu Zhao, Tin Chi Nguyen, Nan Deng, K. M. Johnson, and Dongxiao Zhu. "SPATA: A seeding and patching algorithm for de novo transcriptome assembly." In 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW). IEEE, 2011. http://dx.doi.org/10.1109/bibmw.2011.6112351.

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Tin Chi Nguyen, Zhiyu Zhao, and Dongxiao Zhu. "SPATA: A highly accurate GUI tool for de novo transcriptome assembly." In 2011 IEEE International Conference on Bioinformatics and Biomedicine Workshops (BIBMW). IEEE, 2011. http://dx.doi.org/10.1109/bibmw.2011.6112557.

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Sodnomov, T. C., I. A. Kutyrev, O. E. Mazur, and Z. N. Dugarov. "DE NOVO DIBOTHRIOCEPHALUS DENDRITICUS TRANSCRIPTOME ASSEMBLY AND QUALITY ASSESSMENT OF THE ASSEMBLY." In THEORY AND PRACTICE OF PARASITIC DISEASE CONTROL. VNIIP – FSC VIEV, 2025. https://doi.org/10.31016/978-5-6053355-1-1.2025.26.301-306.

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Cestodes as parasitic worms have unique host interaction mechanisms, which generates interest in their substances as potential sources of new drugs needed to treat various autoimmune diseases, allergic diseases, and inflammations. For the first time, we performed de novo assembly of the transcriptome of the gull-tapeworm D. dendriticus at the larval stage of development. The quality of reads obtained in sequencing a Dibothriocephalus dendriticus mRNA was assessed using FastQC. Lowquality reads were filtered using Trimmomatic. De novo transcriptome assembly was performed using Trinity. The asse
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Pavlenko, O. S., N. S. Sadovskaya, O. N. Mustafayev, Yu V. Akashkina, and I. V. Goldenkova-Pavlova. "Transcriptome analysis of Euonymus europaeus fruits at different stages of development." In 2nd International Scientific Conference "Plants and Microbes: the Future of Biotechnology". PLAMIC2020 Organizing committee, 2020. http://dx.doi.org/10.28983/plamic2020.193.

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The transcript Euonymus europaeus was collected de novo. A comparative analysis of transcriptomes from the stage of the globular embryo and the mature fruit made it possible to identify key DGAT genes at the contrasting stages of the development of E. europaeus fruits.
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Mazur, O. E., I. A. Kutyrev, T. V. Sidorova, L. V. Sukhanova, N. B. Terenina, and S. O. Movsesyan. "TRANSCRIPTOME ANALYSIS OF THE SPLEEN OF THE BAIKAL CISCO (LAKE BAIKAL, EASTERN SIBERIA)." In THEORY AND PRACTICE OF PARASITIC DISEASE CONTROL. VNIIP – FSC VIEV, 2024. http://dx.doi.org/10.31016/978-5-6050437-8-2.2024.25.251-255.

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For the first time, new data have been presented on the spleen transcriptome of the Baikal cisco Coregonus migratorius Georgi, 1775 (Salmoniformes: Coregonidae), infected with parasites of different systematic groups. Transcriptomic libraries were sequenced on an Illumina NextSeq550 sequencer using the NextSeq® 550 High Output Kit v2. The de-novo transcriptome was assembled. Conserved domains and their associated Gene Ontology annotations were predicted with Blast2Go. The annotation results of the obtained transcripts found that transcripts were distributed in the spleen into the following cat
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Sze, Sing-Hoi, Jonathan J. Parrott, and Aaron M. Tarone. "A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms." In 2016 IEEE 6th International Conference on Computational Advances in Bio and Medical Sciences (ICCABS). IEEE, 2016. http://dx.doi.org/10.1109/iccabs.2016.7802794.

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Mazur, O. E., I. A. Kutyrev, T. V. Sidorova, and L. V. Sukhanova. "TRANSCRIPTOME ANALYSIS OF INTESTINES OF THE BAIKAL OMUL (LAKE BAIKAL, EASTERN SIBERIA)." In THEORY AND PRACTICE OF PARASITIC DISEASE CONTROL. All-Russian Scientific Research Institute for Fundamental and Applied Parasitology of Animals and Plant – a branch of the Federal State Budget Scientific Institution “Federal Scientific Centre VIEV”, 2023. http://dx.doi.org/10.31016/978-5-6048555-6-0.2023.24.268-274.

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New data were presented for the first time on the intestinal transcriptome of the&#x0D; intestines (posterior section) of the Baikal omul Coregonus migratorius Georgi, 1775&#x0D; (Salmoniformes: Coregonidae) belonging to the deep water bottom morphological&#x0D; group (Lake Baikal) infected with parasites of various systematic groups: cestodes&#x0D; Dibothriocephalus dendriticus, Proteocephalus longicollis, Eubothrium crassum, and&#x0D; nematode Contracaecum osculatum baicalensis. Sequencing of the transcriptomics&#x0D; libraries was performed on an Illumina NextSeq550 sequencer using the Next
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Raporty organizacyjne na temat "De novo leaf transcriptome"

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Sherman, A., D. N. Kuhn, Y. Cohen, R. Ophir, and R. Goenaga. Exploring the polyembryonic seed trait in mango as a basis for a biotechnology platform for fruit tree crops. United States-Israel Binational Agricultural Research and Development Fund, 2021. http://dx.doi.org/10.32747/2021.8134176.bard.

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Mango is one of the most important fruit crops. However, the biology of this fruit tree is under studied. The lack of genetic and genomic resources has limited progress in mango research and breeding. Several research groups have recently started developing genomic tools for mango by creating transcriptome and genomic data. Sexual reproduction in plants is the main pathway for the creation of new genetic combinations. In modern agriculture, breeders exploit the genetic diversity generated through sexual reproduction to develop elite cultivars; however, these cultivars require genetic stabiliza
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Tucker, Mark L., Shimon Meir, Amnon Lers, Sonia Philosoph-Hadas, and Cai-Zhong Jiang. Elucidation of signaling pathways that regulate ethylene-induced leaf and flower abscission of agriculturally important plants. United States Department of Agriculture, 2012. http://dx.doi.org/10.32747/2012.7597929.bard.

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The Problem: Abscission is a highly regulated process, occurring as a natural terminal stage of development, in which various organs are separated from the parent plant. In most plant species, the process is initiated by a decrease in active auxin in the abscission zone (AZ) and an increase in ethylene, and may be accelerated by postharvest or environmental stresses. Another potential key regulator in abscission is IDA (Inflorescence Deficient in Abscission), which was identified as an essential peptide signal for floral organ abscission in Arabidopsis. However, information is still lacking re
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Ghanim, Murad, Joe Cicero, Judith K. Brown, and Henryk Czosnek. Dissection of Whitefly-geminivirus Interactions at the Transcriptomic, Proteomic and Cellular Levels. United States Department of Agriculture, 2010. http://dx.doi.org/10.32747/2010.7592654.bard.

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Our project focuses on gene expression and proteomics of the whitefly Bemisia tabaci (Gennadius) species complex in relation to the internal anatomy and localization of expressed genes and virions in the whitefly vector, which poses a major constraint to vegetable and fiber production in Israel and the USA. While many biological parameters are known for begomovirus transmission, nothing is known about vector proteins involved in the specific interactions between begomoviruses and their whitefly vectors. Identifying such proteins is expected to lead to the design of novel control methods that i
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Gur, Amit, Edward Buckler, Joseph Burger, Yaakov Tadmor, and Iftach Klapp. Characterization of genetic variation and yield heterosis in Cucumis melo. United States Department of Agriculture, 2016. http://dx.doi.org/10.32747/2016.7600047.bard.

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Project objectives: 1) Characterization of variation for yield heterosis in melon using Half-Diallele (HDA) design. 2) Development and implementation of image-based yield phenotyping in melon. 3) Characterization of genetic, epigenetic and transcriptional variation across 25 founder lines and selected hybrids. The epigentic part of this objective was modified during the course of the project: instead of characterization of chromatin structure in a single melon line through genome-wide mapping of nucleosomes using MNase-seq approach, we took advantage of rapid advancements in single-molecule se
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Fridman, Eyal, and Eran Pichersky. Tomato Natural Insecticides: Elucidation of the Complex Pathway of Methylketone Biosynthesis. United States Department of Agriculture, 2009. http://dx.doi.org/10.32747/2009.7696543.bard.

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Plant species synthesize a multitude of specialized compounds 10 help ward off pests. and these in turn may well serve as an alternative to synthetic pesticides to reduce environmental damage and health risks to humans. The general goal of this research was to perform a genetic and biochemical dissection of the natural-insecticides methylketone pathway that is specific to the glandular trichomes of the wild species of tomato, Solanumhabrochaites f. glabratum (accession PI126449). Previous study conducted by us have demonstrated that these compounds are synthesized de novo as a derivate pathway
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Fridman, Eyal, Jianming Yu, and Rivka Elbaum. Combining diversity within Sorghum bicolor for genomic and fine mapping of intra-allelic interactions underlying heterosis. United States Department of Agriculture, 2012. http://dx.doi.org/10.32747/2012.7597925.bard.

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Heterosis, the enigmatic phenomenon in which whole genome heterozygous hybrids demonstrate superior fitness compared to their homozygous parents, is the main cornerstone of modern crop plant breeding. One explanation for this non-additive inheritance of hybrids is interaction of alleles within the same locus. This proposal aims at screening, identifying and investigating heterosis trait loci (HTL) for different yield traits by implementing a novel integrated mapping approach in Sorghum bicolor as a model for other crop plants. Originally, the general goal of this research was to perform a gene
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