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Artykuły w czasopismach na temat „Dihydrouridine”

Autor: Grafiati

Data publikacji: 16 listopada 2024

Data aktualizacji: 31 lipca 2025

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1

Kasprzak, Joanna M., Anna Czerwoniec, and Janusz M. Bujnicki. "Molecular evolution of dihydrouridine synthases." BMC Bioinformatics 13, no. 1 (2012): 153. http://dx.doi.org/10.1186/1471-2105-13-153.

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Byrne, Robert T., Huw T. Jenkins, Daniel T. Peters, et al. "Major reorientation of tRNA substrates defines specificity of dihydrouridine synthases." Proceedings of the National Academy of Sciences 112, no. 19 (2015): 6033–37. http://dx.doi.org/10.1073/pnas.1500161112.

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The reduction of specific uridines to dihydrouridine is one of the most common modifications in tRNA. Increased levels of the dihydrouridine modification are associated with cancer. Dihydrouridine synthases (Dus) from different subfamilies selectively reduce distinct uridines, located at spatially unique positions of folded tRNA, into dihydrouridine. Because the catalytic center of all Dus enzymes is conserved, it is unclear how the same protein fold can be reprogrammed to ensure that nucleotides exposed at spatially distinct faces of tRNA can be accommodated in the same active site. We show t

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3

Whelan, Fiona, Huw T. Jenkins, Samuel C. Griffiths, Robert T. Byrne, Eleanor J. Dodson, and Alfred A. Antson. "From bacterial to human dihydrouridine synthase: automated structure determination." Acta Crystallographica Section D Biological Crystallography 71, no. 7 (2015): 1564–71. http://dx.doi.org/10.1107/s1399004715009220.

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The reduction of uridine to dihydrouridine at specific positions in tRNA is catalysed by dihydrouridine synthase (Dus) enzymes. Increased expression of human dihydrouridine synthase 2 (hDus2) has been linked to pulmonary carcinogenesis, while its knockdown decreased cancer cell line viability, suggesting that it may serve as a valuable target for therapeutic intervention. Here, the X-ray crystal structure of a construct of hDus2 encompassing the catalytic and tRNA-recognition domains (residues 1–340) determined at 1.9 Å resolution is presented. It is shown that the structure can be determined

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4

Dixit, Sameer, and Samie R. Jaffrey. "Expanding the epitranscriptome: Dihydrouridine in mRNA." PLOS Biology 20, no. 7 (2022): e3001720. http://dx.doi.org/10.1371/journal.pbio.3001720.

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5

House, Christopher H., and Stanley L. Miller. "Hydrolysis of Dihydrouridine and Related Compounds." Biochemistry 35, no. 1 (1996): 315–20. http://dx.doi.org/10.1021/bi951577+.

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6

Savage, Dan F., Valérie de Crécy-Lagard, and Anthony C. Bishop. "Molecular determinants of dihydrouridine synthase activity." FEBS Letters 580, no. 22 (2006): 5198–202. http://dx.doi.org/10.1016/j.febslet.2006.08.062.

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7

Dyubankova, N., E. Sochacka, K. Kraszewska, B. Nawrot, P. Herdewijn, and E. Lescrinier. "Contribution of dihydrouridine in folding of the D-arm in tRNA." Organic & Biomolecular Chemistry 13, no. 17 (2015): 4960–66. http://dx.doi.org/10.1039/c5ob00164a.

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8

Feng, Pengmian, Zhaochun Xu, Hui Yang, Hao Lv, Hui Ding, and Li Liu. "Identification of D Modification Sites by Integrating Heterogeneous Features in Saccharomyces cerevisiae." Molecules 24, no. 3 (2019): 380. http://dx.doi.org/10.3390/molecules24030380.

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As an abundant post-transcriptional modification, dihydrouridine (D) has been found in transfer RNA (tRNA) from bacteria, eukaryotes, and archaea. Nonetheless, knowledge of the exact biochemical roles of dihydrouridine in mediating tRNA function is still limited. Accurate identification of the position of D sites is essential for understanding their functions. Therefore, it is desirable to develop novel methods to identify D sites. In this study, an ensemble classifier was proposed for the detection of D modification sites in the Saccharomyces cerevisiae transcriptome by using heterogeneous fe

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9

Yu, F., Y. Tanaka, K. Yamashita, et al. "Molecular basis of dihydrouridine formation on tRNA." Proceedings of the National Academy of Sciences 108, no. 49 (2011): 19593–98. http://dx.doi.org/10.1073/pnas.1112352108.

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10

Bishop, Anthony C., Jimin Xu, Reid C. Johnson, Paul Schimmel, and Valérie de Crécy-Lagard. "Identification of the tRNA-Dihydrouridine Synthase Family." Journal of Biological Chemistry 277, no. 28 (2002): 25090–95. http://dx.doi.org/10.1074/jbc.m203208200.

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11

House, Christopher H., and Stanley L. Miller. "The hydrolysis of dihydrouridine and related compounds." Origins of Life and Evolution of the Biosphere 26, no. 3-5 (1996): 357–58. http://dx.doi.org/10.1007/bf02459807.

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12

Lombard, Murielle, Colbie J. Reed, Ludovic Pecqueur, et al. "Evolutionary Diversity of Dus2 Enzymes Reveals Novel Structural and Functional Features among Members of the RNA Dihydrouridine Synthases Family." Biomolecules 12, no. 12 (2022): 1760. http://dx.doi.org/10.3390/biom12121760.

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Dihydrouridine (D) is an abundant modified base found in the tRNAs of most living organisms and was recently detected in eukaryotic mRNAs. This base confers significant conformational plasticity to RNA molecules. The dihydrouridine biosynthetic reaction is catalyzed by a large family of flavoenzymes, the dihydrouridine synthases (Dus). So far, only bacterial Dus enzymes and their complexes with tRNAs have been structurally characterized. Understanding the structure-function relationships of eukaryotic Dus proteins has been hampered by the paucity of structural data. Here, we combined extensive

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13

Chen, Minghao, Jian Yu, Yoshikazu Tanaka, Miyuki Tanaka, Isao Tanaka, and Min Yao. "Structure of dihydrouridine synthase C (DusC) fromEscherichia coli." Acta Crystallographica Section F Structural Biology and Crystallization Communications 69, no. 8 (2013): 834–38. http://dx.doi.org/10.1107/s1744309113019489.

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14

Dalluge, J. "Conformational flexibility in RNA: the role of dihydrouridine." Nucleic Acids Research 24, no. 6 (1996): 1073–79. http://dx.doi.org/10.1093/nar/24.6.1073.

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15

Draycott, Austin, Matthew C. Wang, Diana Martínez Saucedo, Luisa Escobar-Hoyos, and Wendy Gilbert. "Abstract LB299: Dihydrouridine synthase 2 sustains levels of tRNACys and prevents ferroptosis in lung cancer." Cancer Research 84, no. 7_Supplement (2024): LB299. http://dx.doi.org/10.1158/1538-7445.am2024-lb299.

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Abstract Dihydrouridine is a universally conserved tRNA modification installed by enzymes that are important for human health. High expression of dihydrouridine synthase 2 (DUS2) predicts poor patient outcomes in lung adenocarcinoma (LUAD) for reasons that are not yet clear. Here, we show in human cells and mouse xenografts that DUS2 suppresses ferroptosis, a metal-dependent non-apoptotic form of cell death that is emerging as a therapeutic target in lung cancer. Elevated DUS2 correlates with resistance to ferroptosis inducers and loss of DUS2 causes increased sensitivity with concomitant accu

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16

Kaur, J., M. Raj, and B. S. Cooperman. "Fluorescent labeling of tRNA dihydrouridine residues: Mechanism and distribution." RNA 17, no. 7 (2011): 1393–400. http://dx.doi.org/10.1261/rna.2670811.

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17

Luvino, Delphine, Michael Smietana, and Jean-Jacques Vasseur. "Selective fluorescence-based detection of dihydrouridine with boronic acids." Tetrahedron Letters 47, no. 52 (2006): 9253–56. http://dx.doi.org/10.1016/j.tetlet.2006.10.150.

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18

Gong, Nian, Lin Yang, and Xiang-Sheng Chen. "Structural Features and Phylogenetic Implications of Four New Mitogenomes of Caliscelidae (Hemiptera: Fulgoromorpha)." International Journal of Molecular Sciences 22, no. 3 (2021): 1348. http://dx.doi.org/10.3390/ijms22031348.

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To explore the differences in mitogenome variation and phylogenetics among lineages of the Hemiptera superfamily Fulgoroidea, we sequenced four new mitogenomes of Caliscelidae: two species of the genus Bambusicaliscelis (Caliscelinae: Caliscelini), namely Bambusicaliscelis flavus and B. fanjingensis, and two species of the genus Youtuus (Ommatidiotinae: Augilini), namely Youtuus strigatus and Y. erythrus. The four mitogenomes were 15,922–16,640 bp (base pair) in length, with 37 mitochondrial genes and an AT-rich region. Gene content and arrangement were similar to those of most other sequenced

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19

Xing, Feng, Shawna L. Hiley, Timothy R. Hughes, and Eric M. Phizicky. "The Specificities of Four Yeast Dihydrouridine Synthases for Cytoplasmic tRNAs." Journal of Biological Chemistry 279, no. 17 (2004): 17850–60. http://dx.doi.org/10.1074/jbc.m401221200.

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20

Bou-Nader, Charles, Damien Brégeon, Ludovic Pecqueur, Marc Fontecave, and Djemel Hamdane. "Electrostatic Potential in the tRNA Binding Evolution of Dihydrouridine Synthases." Biochemistry 57, no. 37 (2018): 5407–14. http://dx.doi.org/10.1021/acs.biochem.8b00584.

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21

Kato, Tatsuya, Yataro Daigo, Satoshi Hayama, et al. "A Novel Human tRNA-Dihydrouridine Synthase Involved in Pulmonary Carcinogenesis." Cancer Research 65, no. 13 (2005): 5638–46. http://dx.doi.org/10.1158/0008-5472.can-05-0600.

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22

COONEY, MICHAEL G., and PAUL W. DOETSCH. "Molecular modeling Studies of a Deoxyoctanucleotide Containing a Dihydrouridine Lesion." Annals of the New York Academy of Sciences 726, no. 1 DNA Damage (1994): 299–302. http://dx.doi.org/10.1111/j.1749-6632.1994.tb52832.x.

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23

Jenkins, Huw, Fiona Whelan, Daniel Peters, et al. "Recognition of Specific Uridines in tRNA Substrates by Dihydrouridine Synthases." Biophysical Journal 110, no. 3 (2016): 239a. http://dx.doi.org/10.1016/j.bpj.2015.11.1319.

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24

Goyal, Nainee, Anshuman Chandra, Imteyaz Qamar, and Nagendra Singh. "Structural studies on dihydrouridine synthase A (DusA) from Pseudomonas aeruginosa." International Journal of Biological Macromolecules 132 (July 2019): 254–64. http://dx.doi.org/10.1016/j.ijbiomac.2019.03.209.

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25

Suleman, Muhammad Taseer, Fahad Alturise, Tamim Alkhalifah, and Yaser Daanial Khan. "iDHU-Ensem: Identification of dihydrouridine sites through ensemble learning models." DIGITAL HEALTH 9 (January 2023): 205520762311659. http://dx.doi.org/10.1177/20552076231165963.

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Background Dihydrouridine (D) is one of the most significant uridine modifications that have a prominent occurrence in eukaryotes. The folding and conformational flexibility of transfer RNA (tRNA) can be attained through this modification. Objective The modification also triggers lung cancer in humans. The identification of D sites was carried out through conventional laboratory methods; however, those were costly and time-consuming. The readiness of RNA sequences helps in the identification of D sites through computationally intelligent models. However, the most challenging part is turning th

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26

Noon, Kathleen R., Rebecca Guymon, Pamela F. Crain, et al. "Influence of Temperature on tRNA Modification in Archaea: Methanococcoides burtonii (Optimum Growth Temperature [Topt], 23°C) and Stetteria hydrogenophila (Topt, 95°C)." Journal of Bacteriology 185, no. 18 (2003): 5483–90. http://dx.doi.org/10.1128/jb.185.18.5483-5490.2003.

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ABSTRACT We report the first study of tRNA modification in psychrotolerant archaea, specifically in the archaeon Methanococcoides burtonii grown at 4 and 23°C. For comparison, unfractionated tRNA from the archaeal hyperthermophile Stetteria hydrogenophila cultured at 93°C was examined. Analysis of modified nucleosides using liquid chromatography-electrospray ionization mass spectrometry revealed striking differences in levels and identities of tRNA modifications between the two organisms. Although the modification levels in M. burtonii tRNA are the lowest in any organism of which we are aware,

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27

Hayakawa, Hiroyuki, Hiromichi Tanaka, and Tadashi Miyasaka. "Lithiation of 5,6-dihydrouridine: a new route to 5-substituted uridines." Tetrahedron 41, no. 9 (1985): 1675–83. http://dx.doi.org/10.1016/s0040-4020(01)96481-6.

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28

Deb, Indrajit, Joanna Sarzynska, Lennart Nilsson, and Ansuman Lahiri. "Rapid communication capturing the destabilizing effect of dihydrouridine through molecular simulations." Biopolymers 101, no. 10 (2014): 985–91. http://dx.doi.org/10.1002/bip.22495.

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Depelley, Jean, Robert Granet, Pierre Krausz, Salomon Piekarski, Claudine Bosgiraud, and Sylvie Beaussoleil. "Synthesis and Antiretroviral Evaluation of Various 5-Alkyl-6-AZA-5,6-Dihydrouridine." Nucleosides and Nucleotides 13, no. 4 (1994): 1007–10. http://dx.doi.org/10.1080/15257779408011873.

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30

XING, FENG, MARK R. MARTZEN, and ERIC M. PHIZICKY. "A conserved family of Saccharomyces cerevisiae synthases effects dihydrouridine modification of tRNA." RNA 8, no. 3 (2002): 370–81. http://dx.doi.org/10.1017/s1355838202029825.

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31

Leon-Lai, Chui Har, Michael J. Gresser, and Alan S. Tracey. "Influence of vanadium(V) complexes on the catalytic activity of ribonuclease A. The role of vanadate complexes as transition state analogues to reactions at phosphate." Canadian Journal of Chemistry 74, no. 1 (1996): 38–48. http://dx.doi.org/10.1139/v96-005.

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The interactions of vanadate and its complexes of uridine, 5,6-dihydrouridine, and methyl β-D-ribofuranoside with bovine pancreatic ribonuclease A (RNase A) (EC 3.1.27.5) were studied by 51V NMR spectroscopy and enzyme kinetics. From kinetic studies, it was found that neither inorganic vanadate nor the methyl β-D-ribofuranoside–vanadate complex significantly inhibited the RNase A catalyzed hydrolysis of uridine 2′,3′-cyclic monophosphate. The NMR binding studies were in full agreement with the kinetics studies and showed that neither inorganic vanadate nor the methyl β-D-ribofuranoside–vanadat

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32

Negishi, Kazuo, and Hikoya Hayatsu. "The Fluorescence Property of Dinucleoside Monophosphates Containing Ethenoadenosine and 5, 6-Dihydrouridine Derivatives." Nucleosides and Nucleotides 13, no. 6-7 (1994): 1551–55. http://dx.doi.org/10.1080/15257779408012170.

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Mittelstadt, M., A. Frump, T. Khuu, et al. "Interaction of human tRNA-dihydrouridine synthase-2 with interferon-induced protein kinase PKR." Nucleic Acids Research 36, no. 3 (2007): 998–1008. http://dx.doi.org/10.1093/nar/gkm1129.

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Chen, Jan-Kan, Jürgen H. Krauss, Stephen S. Hixson, and Robert A. Zimmermann. "Covalent cross-linking of tRNAGly1 to the ribosomal P site via the dihydrouridine loop." Biochimica et Biophysica Acta (BBA) - Gene Structure and Expression 825, no. 2 (1985): 161–68. http://dx.doi.org/10.1016/0167-4781(85)90100-9.

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Basith, Shaherin, and Balachandran Manavalan. "How well does a data-driven prediction method distinguish dihydrouridine from tRNA and mRNA?" Molecular Therapy - Nucleic Acids 31 (March 2023): 744–45. http://dx.doi.org/10.1016/j.omtn.2023.02.026.

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Giel-Pietraszuk, M., M. Z. Barciszewska, P. Mucha, P. Rekowski, G. Kupryszewski, and J. Barciszewski. "Interaction of HIV Tat model peptides with tRNA and 5S rRNA." Acta Biochimica Polonica 44, no. 3 (1997): 591–600. http://dx.doi.org/10.18388/abp.1997_4407.

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New data are presented on the interaction of model synthetic peptides containing an arginine-rich region of human immunodeficiency virus (HIV-Tat), with native RNA molecules: tRNA(Phe) of Saccharomyces cerevisiae and 5S rRNA from Lupinus luteus. Both RNA species form complexes with the Tat1 (GRKKRRQRRRA) and Tat2 (GRKKRRQRRRAPQDSQTHQASLSKQPA) peptides, as shown by electrophoretic gel shift and RNase footprint assays, and CD measurements. The nucleotide sequence UGGG located in the dihydrouridine loop of tRNAPhe as well as in the loop D of 5S rRNA is specifically protected against RNases. Our d

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37

Finet, Olivier, Carlo Yague-Sanz, Florian Marchand, and Damien Hermand. "The Dihydrouridine landscape from tRNA to mRNA: a perspective on synthesis, structural impact and function." RNA Biology 19, no. 1 (2022): 735–50. http://dx.doi.org/10.1080/15476286.2022.2078094.

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Finet, Olivier, Carlo Yague-Sanz, Lara Katharina Krüger, et al. "Transcription-wide mapping of dihydrouridine reveals that mRNA dihydrouridylation is required for meiotic chromosome segregation." Molecular Cell 82, no. 2 (2022): 404–19. http://dx.doi.org/10.1016/j.molcel.2021.11.003.

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Bou-Nader, Charles, Hugo Montémont, Vincent Guérineau, Olivier Jean-Jean, Damien Brégeon, and Djemel Hamdane. "Unveiling structural and functional divergences of bacterial tRNA dihydrouridine synthases: perspectives on the evolution scenario." Nucleic Acids Research 46, no. 3 (2017): 1386–94. http://dx.doi.org/10.1093/nar/gkx1294.

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Griffiths, Sam, Robert T. Byrne, Alfred A. Antson, and Fiona Whelan. "Crystallization and preliminary X-ray crystallographic analysis of the catalytic domain of human dihydrouridine synthase." Acta Crystallographica Section F Structural Biology and Crystallization Communications 68, no. 3 (2012): 333–36. http://dx.doi.org/10.1107/s1744309112003831.

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Dalluge, J. "Quantitative measurement of dihydrouridine in RNA using isotope dilution liquid chromatography-mass spectrometry (LC/MS)." Nucleic Acids Research 24, no. 16 (1996): 3242–45. http://dx.doi.org/10.1093/nar/24.16.3242.

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Reimer, Mark L. J., Karl H. Schram, Katsuyuki Nakano, and Toshio Yasaka. "The identification of 5,6-dihydrouridine in normal human urine by combined gas chromatography/mass spectrometry." Analytical Biochemistry 181, no. 2 (1989): 302–8. http://dx.doi.org/10.1016/0003-2697(89)90247-9.

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De-Hua, Chen, Lou Ju-Xing, Yang Bing-Hui, Wu Lian-Fen, Chen Fa-Xian, and Liu De-Fu. "Synthesis of nonanucleotide (14-20) of the dihydrouridine (D) loop of yeast alanine transfer RNA." Acta Chimica Sinica 3, no. 1 (1985): 71–81. http://dx.doi.org/10.1002/cjoc.19850030112.

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LU, XIANGYI, QIANWEN ZHANG, and XUN BIAN. "Study on the Chinese Subfamily Anabropsinae (Orthoptera: Anostostomatidae) VI: One new species of Anabropsis (Pteranabropsis) from Yunnan Province." Zootaxa 5178, no. 2 (2022): 178–92. http://dx.doi.org/10.11646/zootaxa.5178.2.4.

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This paper is sixth study the Chinese Anabropsinae and reports one new species from Yunnan Province, China, viz. A. (Pteranabropsis) maguanensis sp. nov. (Chinese name: 马关黯螽). Meanwhile, the complete mitochondrical genome of the new species was determined and annotated. The 15, 962 bp circle genome consisted of 13 protein-coding, 22 transfer RNA, 2 ribosomal RNA genes, and an A+T-rich region. It has the typical invertebrate mitochondrial gene arrangement. All protein-coding genes (PCGs) were initiated by typical ATN codon. The nucleotide compositions were significant bias towards AT. All trans

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Zheng, Fang-Yuan, Qiu-Yue Shi, Yao Ling, Jian-Yu Chen, Bo-Fan Zhang, and Xin-Jiang Li. "Comparative Analysis of Mitogenomes among Five Species of Filchnerella (Orthoptera: Acridoidea: Pamphagidae) and Their Phylogenetic and Taxonomic Implications." Insects 12, no. 7 (2021): 605. http://dx.doi.org/10.3390/insects12070605.

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Mitogenomes have been widely used for exploring phylogenetic analysis and taxonomic diagnosis. In this study, the complete mitogenomes of five species of Filchnerella were sequenced, annotated and analyzed. Then, combined with other seven mitogenomes of Filchnerella and four of Pamphagidae, the phylogenetic relationships were reconstructed by maximum likelihood (ML) and Bayesian (BI) methods based on PCGs+rRNAs. The sizes of the five complete mitogenomes are Filchnerella sunanensis 15,656 bp, Filchnerella amplivertica 15,657 bp, Filchnerella nigritibia 15,661 bp, Filchnerella pamphagoides 15,6

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Liu, Ning, Hao Wang, Lijun Fang, and Yalin Zhang. "Mitogenome of the Doleschallia bisaltide and Phylogenetic Analysis of Nymphalinae (Lepidoptera, Nymphalidae)." Diversity 15, no. 4 (2023): 558. http://dx.doi.org/10.3390/d15040558.

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The complete mitogenome of Doleschallia bisaltide was sequenced with a size of 16,389 bp. Gene orientation and arrangement in the newly sequenced mitogenome are the same as other mitogenomes in Lepidoptera. Except for trnS1(AGN), which lacks the dihydrouridine (DHC) arm, the other 21 tRNA genes all contain a typical cloverleaf structure. Ka/Ks ratio analysis of 13 protein-coding genes (PCGs) from 23 Nymphalinae species indicates that the evolutionary rate of COX1 was slowest, while that of ATP8, ND5, and ND6 was substantially high. Phylogenetic analysis revealed that Nymphalinae and Kallimini

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47

Yu, Futao, Yoshikazu Tanaka, Shiho Yamamoto, et al. "Crystallization and preliminary X-ray crystallographic analysis of dihydrouridine synthase fromThermus thermophilusand its complex with tRNA." Acta Crystallographica Section F Structural Biology and Crystallization Communications 67, no. 6 (2011): 685–88. http://dx.doi.org/10.1107/s1744309111012486.

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Rider, Lance W., Mette B. Ottosen, Samuel G. Gattis, and Bruce A. Palfey. "Mechanism of Dihydrouridine Synthase 2 from Yeast and the Importance of Modifications for Efficient tRNA Reduction." Journal of Biological Chemistry 284, no. 16 (2009): 10324–33. http://dx.doi.org/10.1074/jbc.m806137200.

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Suleman, Muhammad Taseer, Tamim Alkhalifah, Fahad Alturise, and Yaser Daanial Khan. "DHU-Pred: accurate prediction of dihydrouridine sites using position and composition variant features on diverse classifiers." PeerJ 10 (October 27, 2022): e14104. http://dx.doi.org/10.7717/peerj.14104.

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Background Dihydrouridine (D) is a modified transfer RNA post-transcriptional modification (PTM) that occurs abundantly in bacteria, eukaryotes, and archaea. The D modification assists in the stability and conformational flexibility of tRNA. The D modification is also responsible for pulmonary carcinogenesis in humans. Objective For the detection of D sites, mass spectrometry and site-directed mutagenesis have been developed. However, both are labor-intensive and time-consuming methods. The availability of sequence data has provided the opportunity to build computational models for enhancing t

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Buskiewicz, Iwona, Malgorzata Giel-Pietraszuk, Piotr Mucha, Piotr Rekowski, Gotfryd Kupryszewski, and Miroslawa Z. Barciszewska. "Interaction of HIV Tat Peptides With tRNAPhe from Yeast." Collection of Czechoslovak Chemical Communications 63, no. 6 (1998): 842–50. http://dx.doi.org/10.1135/cccc19980842.

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We present data on the interaction of arginine-rich peptides of human immunodeficiency virus (HIV-Tat) with tRNAPhe of Saccharomyces cerevisiae. We have found that tRNA forms complexes with the Tat1 peptide of amino acid sequence GRKKRRQRRRA and its mutants where R is replaced by D-arginine, citrulline or ornithine. The structure of tRNA-Tat1 complex was probed by specific RNases digestions and Pb2+-induced cleavage of phosphodiester bond of guanosine. The nucleotide sequence UGGG located in the dihydrouridine loop of tRNAPhe binds to Tat peptide and therefore is specifically protected against

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