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Gotowe bibliografie tematyczne / EGene identification

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Gotowa bibliografia na temat „EGene identification”

Autor: Grafiati

Data publikacji: 2 czerwca 2025

Data aktualizacji: 31 lipca 2025

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Artykuły w czasopismach na temat "EGene identification"

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An, Yeeun, and Chaeyoung Lee. "Identification and Interpretation of eQTL and eGenes for Hodgkin Lymphoma Susceptibility." Genes 14, no. 6 (2023): 1142. http://dx.doi.org/10.3390/genes14061142.

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Genome-wide association studies (GWAS) have revealed approximately 100 genomic signals associated with Hodgkin lymphoma (HL); however, their target genes and underlying mechanisms causing HL susceptibility remain unclear. In this study, transcriptome-wide analysis of expression quantitative trait loci (eQTL) was conducted to identify target genes associated with HL GWAS signals. A mixed model, which explains polygenic regulatory effects by the genomic covariance among individuals, was implemented to discover expression genes (eGenes) using genotype data from 462 European/African individuals. O

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Ge, Mei, Chenyu Li, and Zhiyan Zhang. "SNP-Based and Kmer-Based eQTL Analysis Using Transcriptome Data." Animals 14, no. 20 (2024): 2941. http://dx.doi.org/10.3390/ani14202941.

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Traditional expression quantitative trait locus (eQTL) mapping associates single nucleotide polymorphisms (SNPs) with gene expression, where the SNPs are derived from large-scale whole-genome sequencing (WGS) data or transcriptome data. While WGS provides a high SNP density, it also incurs substantial sequencing costs. In contrast, RNA-seq data, which are more accessible and less expensive, can simultaneously yield gene expressions and SNPs. Thus, eQTL analysis based on RNA-seq offers significant potential applications. Two primary strategies were employed for eQTL in this study. The first inv

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Song, Xiya, Han Jin, Xiangyu Li, et al. "Systematically identification of survival-associated eQTLs in a Japanese kidney cancer cohort." PLOS Genetics 21, no. 7 (2025): e1011770. https://doi.org/10.1371/journal.pgen.1011770.

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Background Clear cell renal carcinoma (ccRCC) is the predominant form of kidney cancer, but the prognostic value of expression quantitative trait loci (eQTLs) remains underexplored, particularly in Asian populations. Objective We analyzed whole-exome sequencing and RNA sequencing data from 100 Japanese ccRCC patients to identify eQTLs. Multiple Cox proportional hazard models assessed survival associations, with validation in the Cancer Genome Atlas ccRCC cohort (n = 287). Results We identified 805 eGenes and 4,558 cis-eQTLs in the Japanese cohort. Survival analysis revealed a total of 9 eGenes

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Tleppaeva, Aizhan M. "First record of Sphenoptera (Chilostetha) egena Mannerheim, 1852 (Coleoptera: Buprestidae) from Kazakhstan with notes on its bionomics and distribution." Acta Biologica Sibirica 11 (March 17, 2025): 269–78. https://doi.org/10.5281/zenodo.15030272.

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During the fieldwork conducted between 2021 and 2023 in the territory adjacent to the Tarbagatai Natural Park, a new species of jewel beetle (Coleoptera, Buprestidae), <em>Sphenoptera </em>(<em>Chilostetha</em>) <em>egena </em>Mannerheim, 1852, was discovered, marking a noteworthy addition to the fauna of Kazakhstan. Specimens of this species were collected in June from arid shrub-steppe slopes in the western part of the Tarbagatai Range, specifically near the village of Taskesken in the Karakol River floodplain. Prior to this discovery, <em>Sphenoptera egena</em> had only been reported from r

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Zhou, Meng, Chenjin Ling, Hui Xiao, and Zhiyan Zhang. "Identification of Gene Expression and Splicing QTLs in Porcine Muscle Associated with Meat Quality Traits." Animals 15, no. 9 (2025): 1209. https://doi.org/10.3390/ani15091209.

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Understanding the genetic regulation of gene expression and splicing in muscle tissues is critical for elucidating the molecular mechanisms of meat quality traits. In this study, we integrated large-scale whole-genome sequencing and strand-specific RNA-seq data from 582 F2 hybrid pigs (White Duroc × Erhualian) to characterize the expression and splicing quantitative trait loci (eQTLs/sQTL) in longissimus dorsi muscle. We identified 11,058 cis-eQTL-associated genes (eGenes) and 5139 cis-sQTL-associated genes (sGenes), of which 29% of eGenes and 80% of sGenes were previously unreported in the Pi

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Cox, Nicholas J. "Speaking Stata: Identifying Spells." Stata Journal: Promoting communications on statistics and Stata 7, no. 2 (2007): 249–65. http://dx.doi.org/10.1177/1536867x0700700209.

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Spells in time series (and more generally in any kind of one-dimensional series) may be defined as sequences of observations that are homogeneous in some sense. For example, a categorical variable may remain in the same state, or values of a measured variable may satisfy the same true–false condition. Devices for working with spells in Stata include marking the start of each spell with indicator variables and tagging spells with integer codes. Panel data are easy to handle with the by: prefix. Some kinds of spell identification require two passes through the data, as when only spells of some m

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Tishechkin, Alexey, Alexander Konstantinov, Sanjay Bista, Robert Pemberton, and Ted Center. "Review of the continental Oriental species of Lilioceris Reitter (Coleoptera, Chrysomelidae, Criocerinae) closely related to Lilioceris impressa (F.)." ZooKeys 103 (June 10, 2011): 63–83. https://doi.org/10.3897/zookeys.103.983.

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Criocerine leaf beetles found in Nepal feeding on <i>Dioscorea bulbifera</i> (L.), an exotic, invasive weed of Asian origin, were identified as <i>Lilioceris cheni</i> Gressitt and Kimoto based on a synopsis of the Oriental <i>Lilioceris</i> species and review of the <i>Lilioceris impressa</i> species group. All the continental, Oriental species included in the group are diagnosed and illustrated, and a key for their identification is provided. Species status of <i>Lilioceris thibetana</i> Pic, 1916 is resurrected. The following new synonyms are proposed: <i>L. coomani</i> (Pic, 1928) = <i>L.

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Costa, Wilson J. E. M. "Seven new species of the killifish genus Rivulus (Cyprinodontiformes: Rivulidae) from the Paraná, Paraguay and upperAraguaia river basins, central Brazil." Neotropical Ichthyology 3, no. 1 (2005): 69–82. http://dx.doi.org/10.1590/s1679-62252005000100003.

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Seven new species of the Rivulus punctatus group collected during recent field studies in central Brazil are described. Rivulus dapazi n. sp., from the upper rio Correntes drainage, rio Paraguay basin, is diagnosed by a unique color pattern of the anal and caudal fins in males; R. cyanopterus n. sp., from the upper rio São Lourenço drainage, rio Paraguay basin, is diagnosed by a unique color pattern of the anal fin in both sexes; R. rossoi n. sp., from the rio Inhanduí drainage, rio Paraná basin, is diagnosed by a unique color pattern of the caudal fin in males and a reduced number of gill rak

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Shukla, Anupama. "Species of Laboulbeniales fungi parasitic on some common Indian insects: Isolation, visualization and characterization by Scanning Electron Micrographs (SEM)." Journal of Applied and Natural Science 16, no. 1 (2024): 110–17. http://dx.doi.org/10.31018/jans.v16i1.5347.

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The Laboulbeniales are a group of lesser-known fungi. They occur as ectoparasites on the exoskeleton of various arthropod species, mainly beetles, cockroaches, ants, dipterans and a few millipede genera appearing as hairs/bristles coming out of their cuticle. They are small, non-mycelial fungi forming compact multicellular thalli, starting from a two-celled sheathed ascospore which continues to envelop the mature thallus. The fungi, being obligate, spend their entire life cycle on their insect hosts. The present study attempted to locate the Laboulbeniales fungi in the common insects of India,

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Zhang, Shuo, Zhou Jiang, and Ping Zeng. "Incorporating genetic similarity of auxiliary samples into eGene identification under the transfer learning framework." Journal of Translational Medicine 22, no. 1 (2024). http://dx.doi.org/10.1186/s12967-024-05053-6.

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Abstract Background The term eGene has been applied to define a gene whose expression level is affected by at least one independent expression quantitative trait locus (eQTL). It is both theoretically and empirically important to identify eQTLs and eGenes in genomic studies. However, standard eGene detection methods generally focus on individual cis-variants and cannot efficiently leverage useful knowledge acquired from auxiliary samples into target studies. Methods We propose a multilocus-based eGene identification method called TLegene by integrating shared genetic similarity information ava

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