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Artykuły w czasopismach na temat „Multi-locus phylogeny”

Autor: Grafiati

Data publikacji: 2 czerwca 2025

Data aktualizacji: 31 lipca 2025

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1

Hernández-Restrepo, M., H. Madrid, Y. P. Tan, et al. "Multi-locus phylogeny and taxonomy of Exserohilum." Persoonia - Molecular Phylogeny and Evolution of Fungi 41, no. 1 (2018): 71–108. http://dx.doi.org/10.3767/persoonia.2018.41.05.

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Thambugala, Kasun M., D. Anupama Daranagama, Erio Camporesi, Chonticha Singtripop, Zuo-Yi Liu, and Kevin D. Hyde. "Multi-Locus Phylogeny Reveals the Sexual State ofTiarosporellain Botryosphaeriaceae." Cryptogamie, Mycologie 35, no. 4 (2014): 359–67. http://dx.doi.org/10.7872/crym.v35.iss4.2014.359.

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Campanella, Daniela, Lily C. Hughes, Peter J. Unmack, Devin D. Bloom, Kyle R. Piller, and Guillermo Ortí. "Multi-locus fossil-calibrated phylogeny of Atheriniformes (Teleostei, Ovalentaria)." Molecular Phylogenetics and Evolution 86 (May 2015): 8–23. http://dx.doi.org/10.1016/j.ympev.2015.03.001.

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Seo, Mun-Won, Jeong-Young Song, and Hong-Gi Kim. "Multi-locus Phylogeny Analysis of Korean Isolates of Phytophthora Species Based on Sequence of Ribosomal and Mitochondrial DNA." Korean Journal of Mycology 38, no. 1 (2010): 40–47. http://dx.doi.org/10.4489/kjm.2010.38.1.040.

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TIAN, XINGGUO, SAOWALUCK TIBPROMMA, SAMANTHA C. KARUNARATHNA, et al. "Additions to the genus Periconia from northern Thailand." Phytotaxa 555, no. 1 (2022): 73–86. http://dx.doi.org/10.11646/phytotaxa.555.1.5.

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Pineapple is one of the economically important fruits in Chiang Rai Province but few studies have been carried out on fungal saprobes on this plant. During a survey of fungal saprobes on pineapple, several dead leaves covered by hyphomycetous fungi with effuse colonies, dark brown to black on the host substrate were collected. Phylogenetic analyses of combined ITS, LSU, SSU, and TEF1-α sequence data revealed that our fungal collections are members of Periconia. Based on morphological comparisons and multi-locus phylogeny we introduce a new species (Periconia ananasi sp. nov.) and a new host an

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6

TERMAN, ŞUHEDA ALDEMİR, MUSTAFA EMRE AKÇAY, and AYTEN DIZKIRICI. "Phylogenetic and taxonomic analyses reveal three new records of Helvella in Türkiye." Phytotaxa 694, no. 3 (2025): 247–63. https://doi.org/10.11646/phytotaxa.694.3.4.

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In this study, morphological and molecular analyses of three newly collected saddle-like fungi confirm their classification within the genus Helvella L. from the eastern Türkiye. A three-locus phylogeny was constructed using the internal transcribed spacer (ITS) region, the translation elongation factor 1-alpha (TEF1-α), and the large subunit (LSU) of the ribosomal RNA gene. Phylogenetic analyses were performed using Maximum Likelihood (ML) and Bayesian Inference (BI) approaches. The phylogeny inferred from the concatenated dataset revealed three distinct clades. The Turkish Helvella species w

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FARIAS, ANTONIO ROBERTO GOMES DE, JOHNNY LOUANGPHAN, and NAGHMEH AFSHARI. "Dothiorella saprophytica sp. nov.: a new Dothiorella sexual morph from Thailand." Phytotaxa 616, no. 2 (2023): 149–59. http://dx.doi.org/10.11646/phytotaxa.616.2.4.

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Dothiorella has cosmopolitan species and a wide range of hosts as endophytes, saprobes, and pathogens. Many species have been introduced solely based on their host association, resulting in misidentification. This study describes a novel species, Dothiorella saprophytica sp. nov., a sexual morph of Dothiorella, from Chiang Mai, Thailand using multi-locus phylogeny (ITS + tef1-α + β-tub) and morphological characters. Detailed morphology and multi-locus phylogeny are provided to give more insights into the diversity and taxonomy of this genus. Dothiorella saprophytica is characterized by its sex

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8

Heiðmarsson, Starri, Cécile Gueidan, Jolanta Miadlikowska, and François Lutzoni. "Multi-locus phylogeny supports the placement of Endocarpon pulvinatum within Staurothele s. str. (lichenised ascomycetes, Eurotiomycetes, Verrucariaceae)." Phytotaxa 306, no. 1 (2017): 37–48. https://doi.org/10.11646/phytotaxa.306.1.3.

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Heiðmarsson, Starri, Gueidan, Cécile, Miadlikowska, Jolanta, Lutzoni, François (2017): Multi-locus phylogeny supports the placement of Endocarpon pulvinatum within Staurothele s. str. (lichenised ascomycetes, Eurotiomycetes, Verrucariaceae). Phytotaxa 306 (1): 37-48, DOI: 10.11646/phytotaxa.306.1.3, URL: http://dx.doi.org/10.11646/phytotaxa.306.1.3

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Tennakoon, Danushka S., Chang-Hsin Kuo, and Kevin D. Hyde. "Multi-locus phylogeny reveals Phaeodothis mori sp. nov. (Didymosphaeriaceae, Pleosporales) from dead leaves of Morus australis." Phytotaxa 428, no. 3 (2020): 241–54. https://doi.org/10.11646/phytotaxa.428.3.5.

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Tennakoon, Danushka S., Kuo, Chang-Hsin, Hyde, Kevin D. (2020): Multi-locus phylogeny reveals Phaeodothis mori sp. nov. (Didymosphaeriaceae, Pleosporales) from dead leaves of Morus australis. Phytotaxa 428 (3): 241-254, DOI: 10.11646/phytotaxa.428.3.5, URL: http://dx.doi.org/10.11646/phytotaxa.428.3.5

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10

Catullo, Renee A., Paul Doughty, Dale Roberts, and Scott Keogh. "Multi-locus phylogeny and taxonomic revision of Uperoleia toadlets (Anura: Myobatrachidae) from the western arid zone of Australia, with a description of a new species." Zootaxa 2902 (December 31, 2011): 1–43. https://doi.org/10.5281/zenodo.201835.

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Catullo, Renee A., Doughty, Paul, Roberts, Dale, Keogh, Scott (2011): Multi-locus phylogeny and taxonomic revision of Uperoleia toadlets (Anura: Myobatrachidae) from the western arid zone of Australia, with a description of a new species. Zootaxa 2902: 1-43, DOI: 10.5281/zenodo.201835

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Pietersen, Darren W., Clarke H. Scholtz, and Armanda D.S. Bastos. "Multi-locus phylogeny of southern African Acontias aurantiacus (Peters) subspecies (Scincidae: Acontinae) confirms the presence of three genetically, geographically and morphologically discrete taxa." Zootaxa 4442, no. 3 (2018): 427–40. https://doi.org/10.11646/zootaxa.4442.3.5.

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Pietersen, Darren W., Scholtz, Clarke H., Bastos, Armanda D.S. (2018): Multi-locus phylogeny of southern African Acontias aurantiacus (Peters) subspecies (Scincidae: Acontinae) confirms the presence of three genetically, geographically and morphologically discrete taxa. Zootaxa 4442 (3): 427-440, DOI: 10.11646/zootaxa.4442.3.5

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12

Udayanga, Dhanushka, Xingzhong Liua, Eric H. C. Mckenzie, Ekachai Chukeatirote, and Kevin D. Hyde. "Multi-locus Phylogeny Reveals Three new Species of Diaporthe from Thailand." Cryptogamie, Mycologie 33, no. 3 (2012): 295–309. http://dx.doi.org/10.7872/crym.v33.iss3.2012.295.

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13

Bast, Felix. "Taxonomic reappraisal of Monostromataceae (Ulvophyceae: Chlorophyta) based on multi-locus phylogeny." Webbia 70, no. 1 (2015): 43–57. http://dx.doi.org/10.1080/00837792.2015.1004845.

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Crow, Karen D., Ziyusei Kanamoto, and Giacomo Bernardi. "Molecular phylogeny of the hexagrammid fishes using a multi-locus approach." Molecular Phylogenetics and Evolution 32, no. 3 (2004): 986–97. http://dx.doi.org/10.1016/j.ympev.2004.03.012.

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15

Porter, Megan L., Marcos Pérez-Losada, and Keith A. Crandall. "Model-based multi-locus estimation of decapod phylogeny and divergence times." Molecular Phylogenetics and Evolution 37, no. 2 (2005): 355–69. http://dx.doi.org/10.1016/j.ympev.2005.06.021.

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16

Verbruggen, Heroen, Matt Ashworth, Steven T. LoDuca, et al. "A multi-locus time-calibrated phylogeny of the siphonous green algae." Molecular Phylogenetics and Evolution 50, no. 3 (2009): 642–53. http://dx.doi.org/10.1016/j.ympev.2008.12.018.

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17

KULARATHNAGE, NUWAN D., DHANUSHKA N. WANASINGHE, INDUNIL C. SENANAYAKE, et al. "Microfungi associated with ornamental palms: Byssosphaeria phoenicis sp. nov. (Melanommataceae) and Pseudocoleophoma rhapidis sp. nov. (Dictyosporiaceae) from south China." Phytotaxa 568, no. 2 (2022): 149–69. http://dx.doi.org/10.11646/phytotaxa.568.2.2.

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The health and attractiveness of ornamental plants play key role in gardening and horticulture. They affect both the economical and ornamental value of the plants. In this study, we collected and isolated microfungi associated with dead petioles of dwarf date palm and living leaves of lady palm from Zhongkai University Garden, Guangzhou, China. Phylogenetic relationships were investigated based on multi-locus phylogeny of ITS, LSU, SSU and tef-1α sequence data. The morphology of the new collections was compared with all the relevant species. Based on the morphological comparison and multi-locu

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18

Semenchenko, Alexander A., Fls Peter S. Cranston, and Eugenyi A. Makarchenko. "A multi-locus phylogeny for the Diamesinae (Chironomidae: Diptera) provides new insights into evolution of an amphitropical clade." Zoological Journal of the Linnean Society 202, no. 4 (2024): 1–16. https://doi.org/10.1093/zoolinnean/zlae035.

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Semenchenko, Alexander A., Cranston Fls, Peter S., Makarchenko, Eugenyi A. (2024): A multi-locus phylogeny for the Diamesinae (Chironomidae: Diptera) provides new insights into evolution of an amphitropical clade. Zoological Journal of the Linnean Society 202 (4): 1-16, DOI: 10.1093/zoolinnean/zlae035, URL: https://doi.org/10.1093/zoolinnean/zlae035

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19

Attigala, Lakshmi, Jimmy K. Triplett, Hashendra-Suvini Kathriarachchi, and Lynn G. Clark. "A new genus and a major temperate bamboo lineage of the Arundinarieae (Poaceae: Bambusoideae) from Sri Lanka based on a multi-locus plastid phylogeny." Phytotaxa 174, no. 1 (2014): 187–205. https://doi.org/10.11646/phytotaxa.174.4.1.

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Attigala, Lakshmi, Triplett, Jimmy K., Kathriarachchi, Hashendra-Suvini, Clark, Lynn G. (2014): A new genus and a major temperate bamboo lineage of the Arundinarieae (Poaceae: Bambusoideae) from Sri Lanka based on a multi-locus plastid phylogeny. Phytotaxa 174 (1): 187-205, DOI: 10.11646/phytotaxa.174.4.1, URL: http://dx.doi.org/10.11646/phytotaxa.174.4.1

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Schwartz, Thomas, Stephan Nylinder, Chandrika Ramadugu, Alexandre Antonelli, and Bernard E. Pfeil. "The Origin of Oranges: A Multi-locus Phylogeny of Rutaceae Subfamily Aurantioideae." Systematic Botany 40, no. 4 (2016): 1053–62. http://dx.doi.org/10.1600/036364415x690067.

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HOJJATI, FATEMEH, ROBERT P. ADAMS, and RANDALL G. TERRY. "Discovery of chloroplast capture in Juniperus excelsa complex by multi- locus phylogeny." Phytotaxa 413, no. 1 (2019): 11–26. http://dx.doi.org/10.11646/phytotaxa.413.1.2.

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Previous studies of nrDNA (nuclear DNA) of Juniperus seravschanica indicated its nuclear DNA (ITS) was from an ancestor of J. polycarpos. However, analysis of cpDNA (chloroplast DNA) suggested the taxon had derived its chloroplast from an ancestor of J. foetidissima. That study has been viewed as putative, because the ITS region is sometimes unreliable for the detection of ancestral hybrids due to concerted evolution and lineage sorting. The recent availability of several single copy nuclear genes (SCNGs) with primers specifically designed for Juniperus presented an opportunity to fully invest

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22

Callahan, Melissa S., and Mark A. McPeek. "Multi-locus phylogeny and divergence time estimates of Enallagma damselflies (Odonata: Coenagrionidae)." Molecular Phylogenetics and Evolution 94 (January 2016): 182–95. http://dx.doi.org/10.1016/j.ympev.2015.08.013.

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Lu, Yong-Zhong, Jian-Kui (Jack) Liu, Kevin D. Hyde, et al. "A taxonomic reassessment of Tubeufiales based on multi-locus phylogeny and morphology." Fungal Diversity 92, no. 1 (2018): 131–344. http://dx.doi.org/10.1007/s13225-018-0411-y.

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Zhang, Y., C. L. Schoch, J. Fournier, et al. "Multi-locus phylogeny of Pleosporales: a taxonomic, ecological and evolutionary re-evaluation." Studies in Mycology 64 (2009): 85–102. http://dx.doi.org/10.3114/sim.2009.64.04.

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Zibani, Abdenour, Oana Sicora, Monica Marian, and Hamida Benslimane. "Multi-locus phylogeny and morphology of Curvularia isolates associated with leaf spots of corn in northern Algeria unveiled two new species, C. algeriensis sp. nov. and C. boudouaouensis sp. nov., with a new record for C. spicifera." Phytotaxa 650, no. 1 (2024): 23–46. https://doi.org/10.11646/phytotaxa.650.1.3.

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Zibani, Abdenour, Sicora, Oana, Marian, Monica, Benslimane, Hamida (2024): Multi-locus phylogeny and morphology of Curvularia isolates associated with leaf spots of corn in northern Algeria unveiled two new species, C. algeriensis sp. nov. and C. boudouaouensis sp. nov., with a new record for C. spicifera. Phytotaxa 650 (1): 23-46, DOI: 10.11646/phytotaxa.650.1.3, URL: http://dx.doi.org/10.11646/phytotaxa.650.1.3

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Zhang, Wei, Bhushan M. Jayarao, and Stephen J. Knabel. "Multi-Virulence-Locus Sequence Typing of Listeria monocytogenes." Applied and Environmental Microbiology 70, no. 2 (2004): 913–20. http://dx.doi.org/10.1128/aem.70.2.913-920.2004.

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ABSTRACT A multi-virulence-locus sequence typing (MVLST) scheme was developed for subtyping Listeria monocytogenes, and the results obtained using this scheme were compared to those of pulsed-field gel electrophoresis (PFGE) and the published results of other typing methods, including ribotyping (RT) and multilocus sequence typing (MLST). A set of 28 strains (eight different serotypes and three known genetic lineages) of L. monocytogenes was selected from a strain collection (n > 1,000 strains) to represent the genetic diversity of this species. Internal fragments (ca. 418 to 469 bp) of thr

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Santos, Liliana, Artur Alves, and Rui Alves. "Evaluating multi-locus phylogenies for species boundaries determination in the genusDiaporthe." PeerJ 5 (March 28, 2017): e3120. http://dx.doi.org/10.7717/peerj.3120.

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BackgroundSpecies identification is essential for controlling disease, understanding epidemiology, and to guide the implementation of phytosanitary measures against fungi from the genusDiaporthe. AccurateDiaporthespecies separation requires using multi-loci phylogenies. However, defining the optimal set of loci that can be used for species identification is still an open problem.MethodsHere we addressed that problem by identifying five loci that have been sequenced in 142Diaportheisolates representing 96 species:TEF1,TUB,CAL,HISand ITS. We then used every possible combination of those loci to

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Fregin, Silke, Martin Haase, Urban Olsson, and Per Alström. "Multi-locus phylogeny of the family Acrocephalidae (Aves: Passeriformes) – The traditional taxonomy overthrown." Molecular Phylogenetics and Evolution 52, no. 3 (2009): 866–78. http://dx.doi.org/10.1016/j.ympev.2009.04.006.

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Vaghefi, Niloofar, Susan M. Thompson, Rohan B. E. Kimber, et al. "Multi-locus phylogeny and pathogenicity of Stemphylium species associated with legumes in Australia." Mycological Progress 19, no. 4 (2020): 381–96. http://dx.doi.org/10.1007/s11557-020-01566-8.

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Marin-Felix, Y., M. Hernández-Restrepo, and P. W. Crous. "Multi-locus phylogeny of the genus Curvularia and description of ten new species." Mycological Progress 19, no. 6 (2020): 559–88. http://dx.doi.org/10.1007/s11557-020-01576-6.

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Ye, Sheng-Yi, Yu-Bo Zhang, Fang Wu, and Hong-Xia Liu. "Multi-locus phylogeny reveals two new species of Exidia (Auriculariales, Basidiomycota) from China." Mycological Progress 19, no. 9 (2020): 859–68. http://dx.doi.org/10.1007/s11557-020-01601-8.

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Lefoulon, Emilie, Odile Bain, Jérôme Bourret, et al. "Shaking the Tree: Multi-locus Sequence Typing Usurps Current Onchocercid (Filarial Nematode) Phylogeny." PLOS Neglected Tropical Diseases 9, no. 11 (2015): e0004233. http://dx.doi.org/10.1371/journal.pntd.0004233.

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Holland, L. A., D. P. Lawrence, M. T. Nouri, R. Travadon, T. C. Harrington, and F. P. Trouillas. "Taxonomic Revision and Multi-locus Phylogeny of the North American Clade Of Ceratocystis." Fungal Systematics and Evolution 3, no. 1 (2019): 135–56. http://dx.doi.org/10.3114/fuse.2019.03.07.

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Pietersen, Darren W., Andrew E. McKechnie, Raymond Jansen, Ian T. Little, and Armanda D. S. Bastos. "Multi‐locus phylogeny of African pipits and longclaws (Aves: Motacillidae) highlights taxonomic inconsistencies." Ibis 161, no. 4 (2018): 781–92. http://dx.doi.org/10.1111/ibi.12683.

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Cai, Qing, Rodham E. Tulloss, Li P. Tang, et al. "Multi-locus phylogeny of lethal amanitas: Implications for species diversity and historical biogeography." BMC Evolutionary Biology 14, no. 1 (2014): 143. http://dx.doi.org/10.1186/1471-2148-14-143.

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Blair, Jaime E., Michael D. Coffey, Sook-Young Park, David M. Geiser, and Seogchan Kang. "A multi-locus phylogeny for Phytophthora utilizing markers derived from complete genome sequences." Fungal Genetics and Biology 45, no. 3 (2008): 266–77. http://dx.doi.org/10.1016/j.fgb.2007.10.010.

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Ai, Congcong, Zixu Dong, Jingxuan Yun, Zhaoxue Zhang, Jiwen Xia, and Xiuguo Zhang. "Phylogeny, Taxonomy and Morphological Characteristics of Apiospora (Amphisphaeriales, Apiosporaceae)." Microorganisms 12, no. 7 (2024): 1372. http://dx.doi.org/10.3390/microorganisms12071372.

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Apiospora is widely distributed throughout the world, and usually identified as endophytes, pathogens or saprobes. In this study, six strains were isolated from Bambusaceae sp., Prunus armeniaca, Salix babylonica and saprophytic leaves in Shandong Province, China. Three new species were identified based on a multi-locus gene phylogenetic analysis using a combined dataset of ITS, LSU, TEF1α and TUB2 in conjunction with morphological assessments. Apiospora armeniaca sp. nov., Apiospora babylonica sp. nov., and Apiospora jinanensis sp. nov. have been comprehensively described and illustrated, rep

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Zhang, Zhi-Yuan, Wan-Hao Chen, Xiao Zou, et al. "Phylogeny and taxonomy of two new Plectosphaerella (Plectosphaerellaceae, Glomerellales) species from China." MycoKeys 57 (August 7, 2019): 47–60. http://dx.doi.org/10.3897/mycokeys.57.36628.

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The genus Plectosphaerella is the largest genus in the family Plectosphaerellaceae. Some species are plant pathogens, whereas others are soil-borne. Seven Plectosphaerella isolates were collected from various locations in the southwest of China. Using multi-locus phylogenetic (LSU, ITS, EF1α, RPB2) analyses combined with morphological characteristics, two new species, Plectosphaerella guizhouensissp. nov. and Plectosphaerella nauculasporasp. nov. are described, illustrated and compared with related species.

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Zhang, Zhi-Yuan, Wan-Hao Chen, Xiao Zou, et al. "Phylogeny and taxonomy of two new Plectosphaerella (Plectosphaerellaceae, Glomerellales) species from China." MycoKeys 57 (August 7, 2019): 47–60. https://doi.org/10.3897/mycokeys.57.36628.

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The genus Plectosphaerella is the largest genus in the family Plectosphaerellaceae. Some species are plant pathogens, whereas others are soil-borne. Seven Plectosphaerella isolates were collected from various locations in the southwest of China. Using multi-locus phylogenetic (LSU, ITS, EF1α, RPB2) analyses combined with morphological characteristics, two new species, Plectosphaerella guizhouensis sp. nov. and Plectosphaerella nauculaspora sp. nov. are described, illustrated and compared with related species.

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Wang, M. M., Q. Chen, Y. Z. Diao, W. J. Duan, and L. Cai. "Fusarium incarnatum-equiseti complex from China." Persoonia - Molecular Phylogeny and Evolution of Fungi 43, no. 1 (2019): 70–89. http://dx.doi.org/10.3767/persoonia.2019.43.03.

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The Fusarium incarnatum-equiseti species complex (FIESC) is shown to encompass 33 phylogenetic species, across a wide range of habitats/hosts around the world. Here, 77 pathogenic and endophytic FIESC strains collected from China were studied to investigate the phylogenetic relationships within FIESC, based on a polyphasic approach combining morphological characters, multi-locus phylogeny and distribution patterns. The importance of standardised cultural methods to the identification and classification of taxa in the FIESC is highlighted. Morphological features of macroconidia, including the s

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Loynes, Kate, Leo Joseph, and J. Scott Keogh. "Multi-locus phylogeny clarifies the systematics of the Australo-Papuan robins (Family Petroicidae, Passeriformes)." Molecular Phylogenetics and Evolution 53, no. 1 (2009): 212–19. http://dx.doi.org/10.1016/j.ympev.2009.05.012.

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Lian, Lian, Kun-Li Xiang, Rosa Del C. Ortiz, and Wei Wang. "A multi-locus phylogeny for the Neotropical Anomospermeae (Menispermaceae): Implications for taxonomy and biogeography." Molecular Phylogenetics and Evolution 136 (July 2019): 44–52. http://dx.doi.org/10.1016/j.ympev.2019.04.006.

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Chen, Hong, and Bao-Kai Cui. "Multi-locus phylogeny and morphology reveal five new species of Fomitiporia (Hymenochaetaceae) from China." Mycological Progress 16, no. 7 (2017): 687–701. http://dx.doi.org/10.1007/s11557-017-1306-0.

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Wang, Jiaying, Xihui Xu, Lijuan Mao, et al. "Endophytic Diaporthe from Southeast China are genetically diverse based on multi-locus phylogeny analyses." World Journal of Microbiology and Biotechnology 30, no. 1 (2013): 237–43. http://dx.doi.org/10.1007/s11274-013-1446-6.

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Košuthová, Alica, Fredrik Jonsson, Ulrika Nordin, and Mats Wedin. "Phylogeny of the European Collema species (Peltigerales, Lecanoromycetes)." MycoKeys 115 (March 18, 2025): 209–20. https://doi.org/10.3897/mycokeys.115.144718.

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The phylogenetic relationships and morphological diversity within European Collema s. str. species were investigated. A total of 104 new sequences (four molecular markers; mtSSU, b-tub, MCM7, and RPB2 genes) from 28 specimens were generated, and analysed and used for multi-locus phylogenetic analyses. Our results suggest that Collema is only monophyletic if Collema glebulentum is considered part of Leptogiums. str. where it originally was described. This is supported by its paraplectenchymatous thallus. Degelius´ informal Collema “Flaccidum”- and “Nigrescens”-groups are not natural, as the “Fl

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Alanjary, Mohammad, Katharina Steinke, and Nadine Ziemert. "AutoMLST: an automated web server for generating multi-locus species trees highlighting natural product potential." Nucleic Acids Research 47, W1 (2019): W276—W282. http://dx.doi.org/10.1093/nar/gkz282.

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Abstract Understanding the evolutionary background of a bacterial isolate has applications for a wide range of research. However generating an accurate species phylogeny remains challenging. Reliance on 16S rDNA for species identification currently remains popular. Unfortunately, this widespread method suffers from low resolution at the species level due to high sequence conservation. Currently, there is now a wealth of genomic data that can be used to yield more accurate species designations via modern phylogenetic methods and multiple genetic loci. However, these often require extensive expe

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Ouass, Sofian, Nathalie Boulanger, Benjamin Lelouvier, et al. "Diversity and phylogeny of the tick-borne bacterial genus Candidatus Allocryptoplasma (Anaplasmataceae)." Parasite 30 (2023): 13. http://dx.doi.org/10.1051/parasite/2023014.

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The family Anaplasmataceae includes tick-borne bacteria of major public and veterinary health interest, as best illustrated by members of the genera Anaplasma and Ehrlichia. Recent epidemiological surveys have also reported on the presence of a novel putative genus in the Anaplasmataceae, Candidatus Allocryptoplasma, previously described as Candidatus Cryptoplasma in the western black-legged tick, Ixodes pacificus. However, the genetic diversity of Ca. Allocryptoplasma and its phylogenetic relationship with other Anaplasmataceae remain unclear. In this study, we developed a multi-locus sequenc

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Qu, Hua, Ulrike Damm, Ya-Jun Hou, and Zai-Wei Ge. "Taxonomy and Phylogeny of Cystolepiota (Agaricaceae, Agaricales): New Species, New Combinations and Notes on the C. seminuda Complex." Journal of Fungi 9, no. 5 (2023): 537. http://dx.doi.org/10.3390/jof9050537.

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Species of Cystolepiota are known as diminutive lepiotaceous fungi with a worldwide distribution. Previous studies revealed that Cystolepiota is not monophyletic and preliminary DNA sequence data from recent collections suggested that several new species exist. Based on multi-locus DNA sequence data (the nuc rDNA internal transcribed spacer region ITS1-5.8S-ITS2, ITS; the D1–D2 domains of nuc 28S rDNA, LSU; the most variable region of the second-largest subunit of RNA polymerase II, rpb2 and a portion of the translation–elongation factor 1-α. tef1), C. sect. Pulverolepiota forms a distinct cla

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Cooper, Endymion D., A. Jonathan Shaw, Blanka Shaw, Murray J. Henwood, Margaret M. Heslewood, and Elizabeth A. Brown. "A multi-locus molecular phylogeny of the Lepidoziaceae: Laying the foundations for a stable classification." Molecular Phylogenetics and Evolution 59, no. 2 (2011): 489–509. http://dx.doi.org/10.1016/j.ympev.2011.02.006.

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Maddock, Simon T., Aaron Childerstone, Bryan Grieg Fry, David J. Williams, Axel Barlow, and Wolfgang Wüster. "Multi-locus phylogeny and species delimitation of Australo-Papuan blacksnakes (Pseudechis Wagler, 1830: Elapidae: Serpentes)." Molecular Phylogenetics and Evolution 107 (February 2017): 48–55. http://dx.doi.org/10.1016/j.ympev.2016.09.005.

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