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Artykuły w czasopismach na temat „Native hydrogen”

Autor: Grafiati

Data publikacji: 5 października 2024

Data aktualizacji: 31 lipca 2025

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1

Scott, Erin. "Exploring for native hydrogen." Nature Reviews Earth & Environment 2, no. 9 (2021): 589. http://dx.doi.org/10.1038/s43017-021-00215-2.

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2

Garrido, Claudia A., Michel Vargas, and Jose F. Alvarez-Barreto. "Auto-Cross-Linking Hydrogels of Hydrogen Peroxide-Oxidized Pectin and Gelatin for Applications in Controlled Drug Delivery." International Journal of Polymer Science 2019 (February 24, 2019): 1–11. http://dx.doi.org/10.1155/2019/9423565.

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Pectin-based hydrogels for biomedical applications have attracted recent attention due to their low cost, large availability of the materials, and high levels of biocompatibility. Specifically, periodate-oxidized pectin has been combined with chitosan and gelatin to form different structures. However, hydrogen peroxide-mediated oxidation of pectin has not been studied for this application; furthermore, there is little information on the effect of the degree of oxidation on hydrogel characteristics nor has the feasibility of these systems as controlled drug delivery matrices been explored. Thus

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3

LeMaster, David M., Janet S. Anderson, and Griselda Hernández. "Role of Native-State Structure in Rubredoxin Native-State Hydrogen Exchange†." Biochemistry 45, no. 33 (2006): 9956–63. http://dx.doi.org/10.1021/bi0605540.

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4

Lee, In-Ho, and Seung-Yeon Kim. "Dynamic Folding Pathway Models of the Trp-Cage Protein." BioMed Research International 2013 (2013): 1–9. http://dx.doi.org/10.1155/2013/973867.

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Using action-derived molecular dynamics (ADMD), we study the dynamic folding pathway models of the Trp-cage protein by providing its sequential conformational changes from its initial disordered structure to the final native structure at atomic details. We find that the numbers of native contacts and native hydrogen bonds are highly correlated, implying that the native structure of Trp-cage is achieved through the concurrent formations of native contacts and native hydrogen bonds. In early stage, an unfolded state appears with partially formed native contacts (~40%) and native hydrogen bonds (

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5

Amini, M. N., R. Saniz, D. Lamoen, and B. Partoens. "Hydrogen impurities and native defects in CdO." Journal of Applied Physics 110, no. 6 (2011): 063521. http://dx.doi.org/10.1063/1.3641971.

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6

Bai, Y., T. Sosnick, L. Mayne, and S. Englander. "Protein folding intermediates: native-state hydrogen exchange." Science 269, no. 5221 (1995): 192–97. http://dx.doi.org/10.1126/science.7618079.

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7

Liu, Wei, Yong Cui, Xu Du, Zhe Zhang, Zisheng Chao, and Yulin Deng. "High efficiency hydrogen evolution from native biomass electrolysis." Energy & Environmental Science 9, no. 2 (2016): 467–72. http://dx.doi.org/10.1039/c5ee03019f.

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8

Stanzione, Antonella, Alessandro Polini, Velia La Pesa, et al. "Development of Injectable Thermosensitive Chitosan-Based Hydrogels for Cell Encapsulation." Applied Sciences 10, no. 18 (2020): 6550. http://dx.doi.org/10.3390/app10186550.

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The three-dimensional complexity of the native extracellular matrix (ECM) suggests switching from 2D to 3D culture systems for providing the cells with an architecture more similar to the physiological environment. Reproducing the three-dimensionality in vitro can guarantee beneficial effects in terms of cell growth, adhesion, proliferation, and/or their differentiation. Hydrogels have the same tailorable physico-chemical and biological characteristics as ECM materials. In this study, we propose a thermoresponsive chitosan-based hydrogel that gels thanks to the addition of organic and inorgani

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9

Van de Walle, Chris G. "Interactions of hydrogen with native defects in GaN." Physical Review B 56, no. 16 (1997): R10020—R10023. http://dx.doi.org/10.1103/physrevb.56.r10020.

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10

Pap, Andrea E., Csaba Dücső, Katalin Kamarás, Gábor Battistig, and István Bársony. "Heavy Water in Gate Stack Processing." Materials Science Forum 573-574 (March 2008): 119–31. http://dx.doi.org/10.4028/www.scientific.net/msf.573-574.119.

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The high reactivity of the free silicon surface and its consequence: the “omnipresent” native silicon dioxide hinders the interface engineering in many processing steps of IC technology on atomic level. Methods known to eliminate the native oxide need in most cases vacuum processing. They frequently deteriorate the atomic flatness of the silicon. Hydrogen passivation by a proper DHF (diluted HF) treatment removes the native silicon oxide without roughening the surface while simultaneously maintains a “quasi oxide free” surface in a neutral or vacuum ambient for short time. Under such circumsta

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11

Gaucher, Eric C. "New Perspectives in the Industrial Exploration for Native Hydrogen." Elements 16, no. 1 (2020): 8–9. http://dx.doi.org/10.2138/gselements.16.1.8.

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12

Zheng, Yuanxia, Jason Lapano, G. Bruce Rayner, and Roman Engel-Herbert. "Native oxide removal from Ge surfaces by hydrogen plasma." Journal of Vacuum Science & Technology A 36, no. 3 (2018): 031306. http://dx.doi.org/10.1116/1.5020966.

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13

Hoang, L., S. Bedard, M. M. G. Krishna, Y. Lin, and S. W. Englander. "Cytochrome c folding pathway: Kinetic native-state hydrogen exchange." Proceedings of the National Academy of Sciences 99, no. 19 (2002): 12173–78. http://dx.doi.org/10.1073/pnas.152439199.

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14

Pan, Yinquan, and Martha S. Briggs. "Hydrogen exchange in native and alcohol forms of ubiquitin." Biochemistry 31, no. 46 (1992): 11405–12. http://dx.doi.org/10.1021/bi00161a019.

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15

St. Pierre, T. G., W. Chua-anusorn, P. Sipos, I. Kron, and J. Webb. "Reaction of hydrogen sulfide with native horse spleen ferritin." Inorganic Chemistry 32, no. 20 (1993): 4480–82. http://dx.doi.org/10.1021/ic00072a053.

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16

TASALTIN, N., F. DUMLUDAG, M. EBEOGLU, H. YUZER, and Z. OZTURK. "Pd/native nitride/n-GaAs structures as hydrogen sensors." Sensors and Actuators B: Chemical 130, no. 1 (2008): 59–64. http://dx.doi.org/10.1016/j.snb.2007.07.114.

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17

Arrington, Cammon B., and Andrew D. Robertson. "Microsecond Protein Folding Kinetics from Native-State Hydrogen Exchange†." Biochemistry 36, no. 29 (1997): 8686–91. http://dx.doi.org/10.1021/bi970872m.

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18

Tanabe, Toyokazu, Tatsuhiro Tanikawa, Katsutoshi Nakamori, et al. "Solar hydrogen evolution over native visible-light-driven Sn3O4." International Journal of Hydrogen Energy 45, no. 53 (2020): 28607–15. http://dx.doi.org/10.1016/j.ijhydene.2020.07.160.

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19

Ivashchenko, Marina N., Anna V. Deryugina, Olga N. Ermokhina, et al. "CHANGES IN THE METABOLISM OF NATIVE AND DECONSERVED BULL SPERMATOZOA UNDER THE ACTION OF MOLECULAR HYDROGEN." Siberian Journal of Life Sciences and Agriculture 16, no. 3 (2024): 133–48. http://dx.doi.org/10.12731/2658-6649-2024-16-3-1152.

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Background. The process of storing sperm in a deeply frozen state causes structural and functional disorders of spermatozoa, which reduces their fertilizing ability. The main mechanism of the negative effect of cryopreservation on spermatozoa is the development of oxidative stress. Molecular hydrogen has some advantages as a potential antioxidant molecule - it is a selective effect on certain reactive oxygen species, the ability to overcome cell membranes, the absence of toxic effects. Purpose. To study the effect of molecular hydrogen on the functional status of native and deconserved sperm c

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20

YARN, KAO-FENG. "HIGH SENSITIVE HYDROGEN SENSOR BY Pd/OXIDE/InGaP MOS STRUCTURE." Modern Physics Letters B 20, no. 28 (2006): 1781–87. http://dx.doi.org/10.1142/s0217984906011888.

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Experimental formation of LPO (liquid phase oxidation)-grown InGaP native oxide near room temperature (~60° C ) is demonstrated. A high oxidation rate is obtained and checked by SEM and AES. The native oxide is determined to be composed of InPO 4 and Ga 2 O 3, analyzed by the results of XPS measurement. Due to the presence of the excellent quality of InGaP native oxide, high hydrogen ( H 2) sensitivity in output current of a Pd /oxide/ InGaP MOS Schottky diode is observed. Under the applied voltage of -1 V and 50 ppm H 2/air, a high sensitivity of 1090 is obtained. An obvious variation of outp

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21

Rifai, Yusnita. "SEARCH FOR GLIOMA DIRECT BINDING SITE OF ALKALOID USING PROTEIN-LIGAND ANT SYSTEM®." Asian Journal of Pharmaceutical and Clinical Research 11, no. 15 (2018): 65. http://dx.doi.org/10.22159/ajpcr.2018.v11s3.30034.

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Objective: This research aims to know the best affinity and the best chemical conformation of anticancer compounds from alkaloid groups that have closed direction to Glioma-associated oncogene using protein-ligand ant system (PLANTS®). The interaction energy and hydrogen bond are included as evaluated targets.Methods: In this research, 27 ligands with root mean square deviation score at 1.614 Å and cyclopamine as native ligand are used. Meanwhile, staurosporinone acts as gliomas directed-binding-site-internal-control. Each ligand is docked in GLI with Protein Data Bank code 2GLI using two meth

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22

Utschig, Lisa M., Sarah R. Soltau, Karen L. Mulfort, Jens Niklas, and Oleg G. Poluektov. "Z-scheme solar water splitting via self-assembly of photosystem I-catalyst hybrids in thylakoid membranes." Chemical Science 9, no. 45 (2018): 8504–12. http://dx.doi.org/10.1039/c8sc02841a.

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23

Rumpel, Sigrun, Judith F. Siebel, Christophe Farès, et al. "Enhancing hydrogen production of microalgae by redirecting electrons from photosystem I to hydrogenase." Energy Environ. Sci. 7, no. 10 (2014): 3296–301. http://dx.doi.org/10.1039/c4ee01444h.

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24

Swift, Michael W., and John L. Lyons. "Deep levels in cesium lead bromide from native defects and hydrogen." Journal of Materials Chemistry A 9, no. 12 (2021): 7491–95. http://dx.doi.org/10.1039/d0ta11742k.

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25

Bhutani, Nidhi, and Jayant B. Udgaonkar. "Folding subdomains of thioredoxin characterized by native-state hydrogen exchange." Protein Science 12, no. 8 (2003): 1719–31. http://dx.doi.org/10.1110/ps.0239503.

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26

Mazon, H. "Hydrogen/deuterium exchange studies of native rabbit MM-CK dynamics." Protein Science 13, no. 2 (2004): 476–86. http://dx.doi.org/10.1110/ps.03380604.

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27

Petit, E. J., F. Houzay, and J. M. Moison. "Interaction of atomic hydrogen with native oxides on GaAs(100)." Journal of Vacuum Science & Technology A: Vacuum, Surfaces, and Films 10, no. 4 (1992): 2172–77. http://dx.doi.org/10.1116/1.578000.

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28

Largy, Eric, and Valérie Gabelica. "Native Hydrogen/Deuterium Exchange Mass Spectrometry of Structured DNA Oligonucleotides." Analytical Chemistry 92, no. 6 (2020): 4402–10. http://dx.doi.org/10.1021/acs.analchem.9b05298.

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29

Petit, E. J., F. Houzay, and J. M. Moison. "Interaction of atomic hydrogen with native oxides on InP(100)." Surface Science 269-270 (May 1992): 902–8. http://dx.doi.org/10.1016/0039-6028(92)91367-k.

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30

Vendruscolo, Michele, Emanuele Paci, Christopher M. Dobson, and Martin Karplus. "Rare Fluctuations of Native Proteins Sampled by Equilibrium Hydrogen Exchange." Journal of the American Chemical Society 125, no. 51 (2003): 15686–87. http://dx.doi.org/10.1021/ja036523z.

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31

Ivanek, Ondřej, Pavel Schmidt, and Bohdan Schneider. "Infrared spectroscopic study of the hydration of porous glass." Collection of Czechoslovak Chemical Communications 54, no. 4 (1989): 878–91. http://dx.doi.org/10.1135/cccc19890878.

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Infrared spectra of mesoporous and macroporous siliceous glasses were measured in the native state and after silylation, at various contents of H2O and D2O. By analysis of these spectra it was found that water is bound to the glass surface by strong hydrogen bonds between the water molecules and isolated Si-OH groups; capillary condensation was observed only in native mesoporous glasses.

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32

Viktor, Volkov, Chelli R., and Righini R. "2P271 INTERMOLECULAR RELATIONS AND HYDROGEN BOND DYNAMICS AT PHOSPHOLIPID MEMBRANE INTERFACE(Native and artificial biomembranes,Oral Presentations)." Seibutsu Butsuri 47, supplement (2007): S180. http://dx.doi.org/10.2142/biophys.47.s180_4.

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33

KHAIRUDIN, NURUL BAHIYAH AHMAD, and HABIBAH A. WAHAB. "PROTEIN STRUCTURE PREDICTION USING GAS PHASE MOLECULAR DYNAMICS SIMULATION: EOTAXIN-3 CYTOKINE AS A CASE STUDY." International Journal of Modern Physics: Conference Series 09 (January 2012): 193–98. http://dx.doi.org/10.1142/s2010194512005259.

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In the current work, the structure of the enzyme CC chemokine eotaxin-3 (1G2S) was chosen as a case study to investigate the effects of gas phase on the predicted protein conformation using molecular dynamics simulation. Generally, simulating proteins in the gas phase tend to suffer from various drawbacks, among which excessive numbers of protein-protein hydrogen bonds. However, current results showed that the effects of gas phase simulation on 1G2S did not amplify the protein-protein hydrogen bonds. It was also found that some of the hydrogen bonds which were crucial in maintaining the second

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34

Byrd, J. C., D. T. A. Lamport, B. Siddiqui, et al. "Deglycosylation of mucin from LS174T colon cancer cells by hydrogen fluoride treatment." Biochemical Journal 261, no. 2 (1989): 617–25. http://dx.doi.org/10.1042/bj2610617.

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Mucin from xenografts of LS174T human colon cancer cells was treated with anhydrous HF for 1 h at 0 degree C to give a product (HFA) with over 80% of the glucosamine and hexose removed, but retaining some galactosamine, and for 3 h at room temperature to give a product (HFB) devoid of carbohydrate. Rabbit antibodies against HFA bound to HFA much more than to HFB, and bound to native mucin to an intermediate extent. Antibodies to HFB bound to HFB more than to HFA, and did not bind to native mucin. Both HFA and native mucin bound a number of lectins, but HFB did not. By SDS/polyacrylamide-gel el

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35

Adhikari, Jagat, James Heffernan, Melissa Edeling, et al. "Epitope Mapping of Japanese Encephalitis Virus Neutralizing Antibodies by Native Mass Spectrometry and Hydrogen/Deuterium Exchange." Biomolecules 14, no. 3 (2024): 374. http://dx.doi.org/10.3390/biom14030374.

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Japanese encephalitis virus (JEV) remains a global public health concern due to its epidemiological distribution and the existence of multiple strains. Neutralizing antibodies against this infection have shown efficacy in in vivo studies. Thus, elucidation of the epitopes of neutralizing antibodies can aid in the design and development of effective vaccines against different strains of JEV. Here, we describe a combination of native mass spectrometry (native-MS) and hydrogen/deuterium exchange mass spectrometry (HDX-MS) to complete screening of eight mouse monoclonal antibodies (MAbs) against J

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36

Del Angel-Sánchez, Karina, Ana Victoria Treviño-Pacheco, Imperio Anel Perales-Martínez, Oscar Martínez-Romero, Daniel Olvera-Trejo, and Alex Elías-Zúñiga. "Antibacterial Crosslinker for Ternary PCL-Reinforced Hydrogels Based on Chitosan, Polyvinyl Alcohol, and Gelatin for Tissue Engineering." Polymers 17, no. 11 (2025): 1520. https://doi.org/10.3390/polym17111520.

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Current hydrogels used for cartilage tissue engineering often lack the mechanical strength and structural integrity required to mimic native human cartilage. This study addresses this limitation by developing reinforced hydrogels based on a ternary polymer blend of poly(vinyl) alcohol (PVA), gelatin (GL), and chitosan (CH), with gentamicin sulfate (GS) as an antimicrobial agent and a crosslinker. The hydrogels were produced using two crosslinking methods, the freeze/thaw and heated cycles, and reinforced with forcespun polycaprolactone (PCL) nanofiber to improve mechanical performance. Chemica

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37

Persson, Filip, and Bertil Halle. "How amide hydrogens exchange in native proteins." Proceedings of the National Academy of Sciences 112, no. 33 (2015): 10383–88. http://dx.doi.org/10.1073/pnas.1506079112.

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Amide hydrogen exchange (HX) is widely used in protein biophysics even though our ignorance about the HX mechanism makes data interpretation imprecise. Notably, the open exchange-competent conformational state has not been identified. Based on analysis of an ultralong molecular dynamics trajectory of the protein BPTI, we propose that the open (O) states for amides that exchange by subglobal fluctuations are locally distorted conformations with two water molecules directly coordinated to the N–H group. The HX protection factors computed from the relative O-state populations agree well with expe

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38

Wang, Fei, Bubesh Jotheeswaran, John Tolle, Xing Lin, Pei Pei Gao, and Alex Demos. "Carbon Removal and Native Oxide Cleaning on Si and SiGe Surfaces in Previum Chamber." Solid State Phenomena 282 (August 2018): 25–30. http://dx.doi.org/10.4028/www.scientific.net/ssp.282.25.

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Advanced technology node demands new capabilities in pre-cleaning substrates of epitaxy films. In particular, cleaning carbon and native oxide on Si and SiGe surfaces are required. In this paper, we present an approach to cleaning both carbon and Si/SiGe native oxide using Previum chamber with two distinct chemistries. FTIR and SEM are used to characterize the conversion and sublimation steps of cleaning native oxide, and carbon film etch rate by hydrogen radicals is presented. The carbon cleaning and oxide cleaning capabilities are integrated in Previum chamber and significantly improved clea

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39

Vara, Brandon A., Xingpin Li, Simon Berritt, Christopher R. Walters, E. James Petersson, and Gary A. Molander. "Scalable thioarylation of unprotected peptides and biomolecules under Ni/photoredox catalysis." Chemical Science 9, no. 2 (2018): 336–44. http://dx.doi.org/10.1039/c7sc04292b.

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A mechanistically distinct, Ni/photoredox-catalyzed arylation of unprotected, native thiols (e.g., cysteine residues) is reported – a process initiated through a visible light-promoted, hydrogen atom transfer (HAT) event under ambient conditions.

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40

Yarn, Kao Feng, Y. L. Lin, M. C. Chure, K. K. Wu, and S. C. Chang. "Pd/Oxide/InGaP MOS Schottky Hydrogen Sensor with Native Thin Oxide." Solid State Phenomena 121-123 (March 2007): 627–30. http://dx.doi.org/10.4028/www.scientific.net/ssp.121-123.627.

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Liquid phase deposition (LPD) grown InGaP native oxide near room temperature (~60oC) is demonstrated and investigated for the first time. A high oxidation rate (~80nm/hr) is obtained and checked by SEM and AES. The oxide is determined to be composed of InPO4 and Ga2O3 which are analyzed by the results of XPS measurement. Due to the presence of excellent quality of InGaP native oxide, high hydrogen (H2) sensitivity in output current of Pd/oxide/InGaP MOS Schottky diode is observed. Under the applied voltage of -1V and 50ppm H2/air, a high sensitivity of 1090 is obtained. In addition, an obvious

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41

Singh, Sanjay K., Avinash Thirumalai, Asmita Pathak, Donald N. Ngwa, and Alok Agrawal. "Functional Transformation of C-reactive Protein by Hydrogen Peroxide." Journal of Biological Chemistry 292, no. 8 (2017): 3129–36. http://dx.doi.org/10.1074/jbc.m116.773176.

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C-reactive protein (CRP) is present at sites of inflammation including amyloid plaques, atherosclerotic lesions, and arthritic joints. CRP, in its native pentameric structural conformation, binds to cells and molecules that have exposed phosphocholine (PCh) groups. CRP, in its non-native pentameric structural conformation, binds to a variety of deposited, denatured, and aggregated proteins, in addition to binding to PCh-containing substances. In this study, we investigated the effects of H2O2, a prototypical reactive oxygen species that is also present at sites of inflammation, on the ligand r

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42

Dou, Zhaolin, Zhe Zhang, and Min Wang. "Self-hydrogen transfer hydrogenolysis of native lignin over Pd-PdO/TiO2." Applied Catalysis B: Environmental 301 (February 2022): 120767. http://dx.doi.org/10.1016/j.apcatb.2021.120767.

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Hill, R. Blake, Jae-Kyoung Hong, and William F. DeGrado. "Hydrogen Bonded Cluster Can Specify the Native State of a Protein." Journal of the American Chemical Society 122, no. 4 (2000): 746–47. http://dx.doi.org/10.1021/ja9919332.

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44

Kim, Key Sun, James A. Fuchs, and Clare K. Woodward. "Hydrogen exchange identifies native-state motional domains important in protein folding." Biochemistry 32, no. 37 (1993): 9600–9608. http://dx.doi.org/10.1021/bi00088a012.

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45

Bai, Yawen. "Protein Folding Pathways Studied by Pulsed- and Native-State Hydrogen Exchange." Chemical Reviews 106, no. 5 (2006): 1757–68. http://dx.doi.org/10.1021/cr040432i.

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46

Wang, Chunxiao, Meiling Liu, Ying Li, et al. "Hydrogen sulfide synthesis in native Saccharomyces cerevisiae strains during alcoholic fermentations." Food Microbiology 70 (April 2018): 206–13. http://dx.doi.org/10.1016/j.fm.2017.10.006.

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47

Craig, Patricio O., Joachim Lätzer, Patrick Weinkam, et al. "Prediction of Native-State Hydrogen Exchange from Perfectly Funneled Energy Landscapes." Journal of the American Chemical Society 133, no. 43 (2011): 17463–72. http://dx.doi.org/10.1021/ja207506z.

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48

Gardino, Alexandra K., Janice Villali, Aleksandr Kivenson, et al. "Transient Non-native Hydrogen Bonds Promote Activation of a Signaling Protein." Cell 139, no. 6 (2009): 1109–18. http://dx.doi.org/10.1016/j.cell.2009.11.022.

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49

Ohashi, Takashi, Yoshiki Saito, Takahiro Maruyama, and Yasushi Nanishi. "Effect of atomic hydrogen irradiation on native oxides of InN surface." Journal of Crystal Growth 237-239 (April 2002): 1022–26. http://dx.doi.org/10.1016/s0022-0248(01)02120-0.

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50

Irún, Marı́a P., Maria M. Garcia-Mira, Jose M. Sanchez-Ruiz, and Javier Sancho. "Native hydrogen bonds in a molten globule: the apoflavodoxin thermal intermediate." Journal of Molecular Biology 306, no. 4 (2001): 877–88. http://dx.doi.org/10.1006/jmbi.2001.4436.

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