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Добірка наукової літератури з теми "Bacteriophages Genetics"

Автор: Grafiati

Опубліковано: 4 червня 2021

Оновлено: 28 січня 2023

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Статті в журналах з теми "Bacteriophages Genetics"

1

Auslander, Noam, Ayal B. Gussow, Sean Benler, Yuri I. Wolf, and Eugene V. Koonin. "Seeker: alignment-free identification of bacteriophage genomes by deep learning." Nucleic Acids Research 48, no. 21 (October 12, 2020): e121-e121. http://dx.doi.org/10.1093/nar/gkaa856.

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Abstract Recent advances in metagenomic sequencing have enabled discovery of diverse, distinct microbes and viruses. Bacteriophages, the most abundant biological entity on Earth, evolve rapidly, and therefore, detection of unknown bacteriophages in sequence datasets is a challenge. Most of the existing detection methods rely on sequence similarity to known bacteriophage sequences, impeding the identification and characterization of distinct, highly divergent bacteriophage families. Here we present Seeker, a deep-learning tool for alignment-free identification of phage sequences. Seeker allows

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2

Timmons, Michael S., M. Lieb, and Richard C. Deonier. "RECOMBINATION BETWEEN IS5 ELEMENTS: REQUIREMENT FOR HOMOLOGY AND RECOMBINATION FUNCTIONS." Genetics 113, no. 4 (August 1, 1986): 797–810. http://dx.doi.org/10.1093/genetics/113.4.797.

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ABSTRACT Intermolecular recombination between two IS5 elements was measured, using bacteriophage lambda recombination vectors, and was compared to recombination between two copies of an SV40 segment cloned into the same vectors. Experiments were conducted in the presence and in the absence of RecA and Red functions, and with the recombining inserts in the same or in reversed orientation. Under all conditions, IS5 elements recombined in a manner similar to the SV40 inserts, indicating that IS-encoded functions did not confer measurable additional intermolecular recombination ability to IS5 in E

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3

Węgrzyn, Grzegorz. "Should Bacteriophages Be Classified as Parasites or Predators?" Polish Journal of Microbiology 71, no. 1 (February 23, 2022): 3–9. http://dx.doi.org/10.33073/pjm-2022-005.

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Abstract Bacteriophages are viruses infecting bacteria and propagating in bacterial cells. They were discovered over 100 years ago, and for decades they played crucial roles as models in genetics and molecular biology and as tools in genetic engineering and biotechnology. Now we also recognize their huge role in natural environment and their importance in human health and disease. Despite our understanding of bacteriophage mechanisms of development, these viruses are described as parasites or predators in the literature. From the biological point of view, there are fundamental differences betw

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4

Schrader, Holly S., John O. Schrader, Jeremy J. Walker, Thomas A. Wolf, Kenneth W. Nickerson, and Tyler A. Kokjohn. "Bacteriophage infection and multiplication occur inPseudomonas aeruginosastarved for 5 years." Canadian Journal of Microbiology 43, no. 12 (December 1, 1997): 1157–63. http://dx.doi.org/10.1139/m97-164.

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Bacteriophages specific for Pseudomonas aeruginosa and Escherichia coli were examined for their ability to multiply in stationary phase hosts. Four out of five bacteriophages tested, including E. coli bacteriophage T7M, were able to multiply in stationary phase hosts. The bacteriophage ACQ had a mean burst size of approximately 1000 in exponential phase P. aeruginosa hosts and 102 in starved hosts, with corresponding latent periods that increased from 65 to 210 min. The bacteriophage UT1 had a mean burst size of approximately 211 in exponential phase P. aeruginosa hosts and 11 in starved hosts

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5

Klein, Gracjana, and Costa Georgopoulos. "Identification of Important Amino Acid Residues That Modulate Binding of Escherichia coli GroEL to Its Various Cochaperones." Genetics 158, no. 2 (June 1, 2001): 507–17. http://dx.doi.org/10.1093/genetics/158.2.507.

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Abstract Genetic experiments have shown that the GroEL/GroES chaperone machine of Escherichia coli is absolutely essential, not only for bacterial growth but also for the propagation of many bacteriophages including λ. The virulent bacteriophages T4 and RB49 are independent of the host GroES function, because they encode their own cochaperone proteins, Gp31 and CocO, respectively. E. coli groEL44 mutant bacteria do not form colonies above 42° nor do they propagate bacteriophages λ, T4, or RB49. We found that the vast majority (40/46) of spontaneous groEL44 temperature-resistant colonies at 43°

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6

Brüggemann, Holger, and Rolf Lood. "Bacteriophages InfectingPropionibacterium acnes." BioMed Research International 2013 (2013): 1–10. http://dx.doi.org/10.1155/2013/705741.

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Viruses specifically infecting bacteria, or bacteriophages, are the most common biological entity in the biosphere. As such, they greatly influence bacteria, both in terms of enhancing their virulence and in terms of killing them. Since the first identification of bacteriophages in the beginning of the 20th century, researchers have been fascinated by these microorganisms and their ability to eradicate bacteria. In this review, we will cover the history of thePropionibacterium acnesbacteriophage research and point out how bacteriophage research has been an important part of the research onP. a

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7

Benedi, Vicente J., Miguel Regué, Sebastián Albertí, Silvia Camprubí, and Juan M. Tomás. "Influence of environmental conditions on infection of Klebsiella pneumoniae by two different types of bacteriophages." Canadian Journal of Microbiology 37, no. 4 (April 1, 1991): 270–75. http://dx.doi.org/10.1139/m91-042.

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The adsorption and efficiency of plating of bacteriophages FC3-1 and FC3-9 on Klebsiella pneumoniae C3 (serotype O1:K66) cells grown at different pHs and temperatures were quantitated. Bacteriophage FC3-1, with lipopolysaccharide as its bacterial receptor, showed a large decrease in efficiency of plating on bacteria grown at low pH or low temperature. Under the same conditions, no significant decrease in efficiency of plating was found for bacteriophage FC3-9, a phage requiring capsule and lipopolysaccharide for its adsorption and carrying capsule-depolymerizing activity. We demonstrate that K

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8

Verbeken, Gilbert, Isabelle Huys, Jean-Paul Pirnay, Serge Jennes, Nina Chanishvili, Jacques Scheres, Andrzej Górski, Daniel De Vos, and Carl Ceulemans. "Taking Bacteriophage Therapy Seriously: A Moral Argument." BioMed Research International 2014 (2014): 1–8. http://dx.doi.org/10.1155/2014/621316.

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The excessive and improper use of antibiotics has led to an increasing incidence of bacterial resistance. In Europe the yearly number of infections caused by multidrug resistant bacteria is more than 400.000, each year resulting in 25.000 attributable deaths. Few new antibiotics are in the pipeline of the pharmaceutical industry. Early in the 20th century, bacteriophages were described as entities that can control bacterial populations. Although bacteriophage therapy was developed and practiced in Europe and the former Soviet republics, the use of bacteriophages in clinical setting was neglect

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9

Gong, Chao, Spencer Heringa, Randhir Singh, Jinkyung Kim, and Xiuping Jiang. "Isolation and characterization of bacteriophages specific to hydrogen-sulfide-producing bacteria." Canadian Journal of Microbiology 59, no. 1 (January 2013): 39–45. http://dx.doi.org/10.1139/cjm-2012-0245.

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The objectives of this study were to isolate and characterize bacteriophages specific to hydrogen-sulfide-producing bacteria (SPB) from raw animal materials, and to develop a SPB-specific bacteriophage cocktail for rendering application. Meat, chicken offal, and feather samples collected from local supermarkets and rendering processing plants were used to isolate SPB (n = 142). Bacteriophages (n = 52) specific to SPB were isolated and purified from the above samples using 18 of those isolated SPB strains as hosts. The host ranges of bacteriophages against 5 selected SPB strains (Escherichia co

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10

Jończyk-Matysiak, Ewa, Marlena Kłak, Beata Weber-Dąbrowska, Jan Borysowski, and Andrzej Górski. "Possible Use of Bacteriophages Active againstBacillus anthracisand OtherB. cereusGroup Members in the Face of a Bioterrorism Threat." BioMed Research International 2014 (2014): 1–14. http://dx.doi.org/10.1155/2014/735413.

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Anthrax is an infectious fatal disease with epidemic potential. Nowadays, bioterrorism usingBacillus anthracisis a real possibility, and thus society needs an effective weapon to neutralize this threat. The pathogen may be easily transmitted to human populations. It is easy to store, transport, and disseminate and may survive for many decades. Recent data strongly support the effectiveness of bacteriophage in treating bacterial diseases. Moreover, it is clear that bacteriophages should be considered a potential incapacitative agent against bioterrorism using bacteria belonging toB. cereusgroup

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Дисертації з теми "Bacteriophages Genetics"

1

Dibbens, Justin Andrew. "Studies on the control of late gene transcription in coliphage 186 /." Title page, contents and summary only, 1990. http://web4.library.adelaide.edu.au/theses/09PH/09phd543.pdf.

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2

Brathwaite, Kelly Janelle. "Interactions between Campylobacters and their bacteriophages." Thesis, University of Nottingham, 2015. http://eprints.nottingham.ac.uk/28422/.

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Campylobacter jejuni is a leading cause of human bacterial enteritis worldwide. Consumption of contaminated poultry meat is considered a major source of infection. The use of virulent bacteriophages as a form of biocontrol to specifically reduce this pathogen in poultry (phage therapy) is a promising intervention that does not rely on antimicrobials and therefore circumvents the emergence of antibiotic-resistant Campylobacter strains. In order to achieve this, a better understanding of the mechanisms involved in phage-host interactions at the molecular level would assist in the development of

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3

Mmolawa, Princess Tlou. "Molecular analysis of temperate phages in Salmonella enterica serovar Typhimurium DT 64 isolated in Australia." Title page, contents and summary only, 2001. http://web4.library.adelaide.edu.au/theses/09PH/09phm6855.pdf.

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Files on accompanying CD-ROM: Appendix III Phages ST64T and ST64B sequences, are in rtf format. Bibliography: leaves 279-324. System requirements for accompanying CD-ROM: IBM or compatible ; Microsoft Word or compatible to read rtf files.

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4

GARVEY, KEVIN JAMES. "DNA SEQUENCE ANALYSIS OF BACILLUS PHAGE PHI29 RIGHT EARLY REGION AND LATE GENES 14, 15 AND 16 (LYSOZYME)." Diss., The University of Arizona, 1986. http://hdl.handle.net/10150/183839.

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The sequence of the rightmost 4,626 bp of the Bacillus phage φ29 genome is presented and analyzed. Nine large open reading frames (ORF's) have been found. Three of these ORF's are correlated with the late genes 14, 15 and 16. The remaining six ORF's are in the right early region. One of these early ORF's has been identified as gene 17 (g17), the only early gene to have been genetically mapped in this region. The remaining ORF's (16.5, 16.6, 16.7, 16.8 and 16.9) were previously unknown. The biological efficacies of some of these putative early ORF's were demonstrated using an in vitro E. coli t

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5

Goh, Shan. "Phenotypic and genotypic characterisation of bacteriophages of Clostridium difficile." University of Western Australia. Microbiology Discipline Group, 2003. http://theses.library.uwa.edu.au/adt-WU2004.0018.

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Clostridium difficile is an important hospital-acquired pathogen causing C. difficile-associated diarrhoea (CDAD) in patients exposed to antibiotics. The lack of information on bacteriophages of C. difficile, and the potential of phages as therapeutic agents for the treatment of CDAD, prompted the isolation and characterisation of phages active against clinical isolates of C. difficile in order to determine the prevalence and significance of phages of this anaerobe. Three (5.4 %) of 56 clinical C. difficile isolates induced by mitomycin C yielded dsDNA phages C2, C5, C6 and C8. The four phages

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6

Harrison, Sharon Jane. "Targeted transgenesis and the 186 site-specific recombination system /." Title page, summary and contents only, 1999. http://web4.library.adelaide.edu.au/theses/09PH/09phh322.pdf.

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7

Huen, Shing-yan Michael, and 禤承恩. "A mechanistic study of lambdaphage-mediated recombination in E. coli." Thesis, The University of Hong Kong (Pokfulam, Hong Kong), 2006. http://hub.hku.hk/bib/B35321854.

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8

Swanson, Rhett. "Cloning and expression of the genes encoding bacteriophage T7 & SP6 RNA polymerase /." Title page, table of contents and summary only, 1990. http://web4.library.adelaide.edu.au/theses/09PH/09phs9722.pdf.

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9

Chang, Jenny Ren-Jye. "Scaffolding-mediated capsid size determination in bacteriophages." Birmingham, Ala. : University of Alabama at Birmingham, 2009. https://www.mhsl.uab.edu/dt/2009p/changj.pdf.

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Анотація:

Thesis (Ph. D.)--University of Alabama at Birmingham, 2009.<br>Title from PDF title page (viewed Jan. 26, 2010). Additional advisors: Asim K. Bej, Gail E. Christie, Peter E. Prevelige, Jr., R. Douglas Watson. Includes bibliographical references.

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10

Brumby, Anthony Mansfield. "The control of prophage induction in coliphage 186 /." Title page, contents and summary only, 1994. http://web4.library.adelaide.edu.au/theses/09PH/09phb893.pdf.

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Книги з теми "Bacteriophages Genetics"

1

Toompuu, O. G. Geneticheskai͡a︡ rekombinat͡s︡ii͡a︡ u bakteriofagov. Tallin: "Valgus", 1985.

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2

Bross, Peter. Untersuchungen zu Struktur und Funktion der Gen 3 Proteine der evolutionär verwandten filamentösen Bakteriophagen IKe und fd. Konstanz: Hartung-Gorre, 1987.

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3

Wendy, Champness, ed. Molecular genetics of bacteria. Washington, D.C: ASM Press, 1997.

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4

Bacterial and bacteriophage genetics. 4th ed. New York: Springer, 2000.

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5

Bacterial and bacteriophage genetics. 3rd ed. New York: Springer-Verlag, 1994.

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6

Molecular genetics of Escherichia coli. New York, NY: Guilford Press, 1989.

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7

Bacterial and bacteriophage genetics: An introduction. 2nd ed. New York: Springer-Verlag, 1988.

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8

T, Adams Horace, ed. Contemporary trends in bacteriophage research. New York: Nova Science Publishers, 2009.

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9

C, Summers William, ed. Reconceiving the gene: Seymour Benzer's adventures in phage genetics. New Haven: Yale University Press, 2006.

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10

Rosander, Anna. Novel applications of shotgun phage display. Uppsala: Swedish University of Agricultural Sciences, 2004.

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Частини книг з теми "Bacteriophages Genetics"

1

Klaenhammer, T. R., and G. F. Fitzgerald. "Bacteriophages and bacteriophage resistance." In Genetics and Biotechnology of Lactic Acid Bacteria, 106–68. Dordrecht: Springer Netherlands, 1994. http://dx.doi.org/10.1007/978-94-011-1340-3_3.

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2

Casey, Aidan, Aidan Coffey, and Olivia McAuliffe. "Genetics and Genomics of Bacteriophages." In Bacteriophages, 1–26. Cham: Springer International Publishing, 2017. http://dx.doi.org/10.1007/978-3-319-40598-8_5-1.

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3

Casey, Aidan, Aidan Coffey, and Olivia McAuliffe. "Genetics and Genomics of Bacteriophages." In Bacteriophages, 193–218. Cham: Springer International Publishing, 2021. http://dx.doi.org/10.1007/978-3-319-41986-2_5.

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4

Bainbridge, Brian W. "Genetic Analysis of Bacteriophages." In Genetics of Microbes, 69–90. Boston, MA: Springer US, 1987. http://dx.doi.org/10.1007/978-1-4615-7093-6_4.

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5

Bainbridge, Brian W. "Genetic Analysis of Bacteriophages." In Genetics of Microbes, 69–90. Boston, MA: Springer US, 1987. http://dx.doi.org/10.1007/978-1-4615-7096-7_4.

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6

Birge, Edward A. "Genetics of Temperate Bacteriophages." In Bacterial and Bacteriophage Genetics, 154–81. New York, NY: Springer New York, 1988. http://dx.doi.org/10.1007/978-1-4757-1995-6_6.

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7

Birge, Edward A. "Genetics of Temperate Bacteriophages." In Bacterial and Bacteriophage Genetics, 206–39. New York, NY: Springer New York, 1994. http://dx.doi.org/10.1007/978-1-4757-2328-1_8.

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8

Birge, Edward A. "Genetics of Temperate Bacteriophages." In Bacterial and Bacteriophage Genetics, 253–92. New York, NY: Springer New York, 2000. http://dx.doi.org/10.1007/978-1-4757-3258-0_8.

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9

Birge, Edward A. "Genetics of Other Intemperate Bacteriophages." In Bacterial and Bacteriophage Genetics, 124–53. New York, NY: Springer New York, 1988. http://dx.doi.org/10.1007/978-1-4757-1995-6_5.

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10

Birge, Edward A. "Genetics of Other Intemperate Bacteriophages." In Bacterial and Bacteriophage Genetics, 174–205. New York, NY: Springer New York, 1994. http://dx.doi.org/10.1007/978-1-4757-2328-1_7.

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Тези доповідей конференцій з теми "Bacteriophages Genetics"

1

Самойлова, Анна. "Бактериофаги Pseudomonas syringae pv. syringae перспективные в подавлении развития бактериального рака плодовых". У VIIth International Scientific Conference “Genetics, Physiology and Plant Breeding”. Institute of Genetics, Physiology and Plant Protection, Republic of Moldova, 2021. http://dx.doi.org/10.53040/gppb7.2021.88.

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Five Pseudomonas syringae pv. syringae bacteriophages were isolated from the quince, apple and pear. After a detailed study, the isolated bacteriophages could be used for biocontrol of the bacterial canker patho-gen. One of the isolated phages was active against the causative agents of bacterial canker and fire blight.

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2

"Plant VLP production system based on bacteriophage MS2 coat protein." In Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Institute of Cytology and Genetics, Siberian Branch of the Russian Academy of Sciences, 2019. http://dx.doi.org/10.18699/plantgen2019-021.

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3

Orlovskaya, P. I., T. A. Pilipchuk, N. I. Girilovich, M. N. Mandrik-Litvinkovich, and E. I. Kalamiyets. "Investigation of genetic heterogeneity of phages from phytopathogenic bacteria Xanthomonas phaseoli." In 2nd International Scientific Conference "Plants and Microbes: the Future of Biotechnology". PLAMIC2020 Organizing committee, 2020. http://dx.doi.org/10.28983/plamic2020.188.

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4

Li, J. K., C. Sun, S. Li, Y. S. Cui, Y. L. Wei, and X. L. Ji. "Genetic Diversity of Bacteriophage Communities in Napahai Wetland." In AASRI International Conference on Industrial Electronics and Applications (IEA 2015). Paris, France: Atlantis Press, 2015. http://dx.doi.org/10.2991/iea-15.2015.169.

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5

Ataee, Shabnam, Oscar Rodriguez, Xavier Brochet, and Carlos Andres Pena. "Towards BacterioPhage Genetic Edition: Deep Learning Prediction of Phage-Bacterium Interactions." In 2020 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2020. http://dx.doi.org/10.1109/bibm49941.2020.9313487.

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6

Hirsh, Andrew D., Todd D. Lillian, and N. C. Perkins. "A Model for Highly Strained DNA in a Cavity." In ASME 2011 International Design Engineering Technical Conferences and Computers and Information in Engineering Conference. ASMEDC, 2011. http://dx.doi.org/10.1115/detc2011-48711.

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A single DNA molecule is a long and flexible biopolymer that contains the genetic code. Building upon the discovery of the iconic double helix over 50 years ago, subsequent studies have emphasized how its biological function is related to the mechanical properties of the molecule. A remarkable system which high-lights the role of DNA bending and twisting is the packing and ejection of DNA into and from viral capsids. A recent 3D reconstruction of bacteriophage φ29 reveals a novel toroidal structure thought to be 30–40 bp of highly bent/twisted DNA contained in a small cavity below the capsid.

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Звіти організацій з теми "Bacteriophages Genetics"

1

Obringer, John W. Bacteriophage T4D Gene 42 Mutants Exhibit a Defective Genetic Exclusion Phenotype. Fort Belvoir, VA: Defense Technical Information Center, February 1991. http://dx.doi.org/10.21236/ada235836.

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2

Hodges, Thomas K., and David Gidoni. Regulated Expression of Yeast FLP Recombinase in Plant Cells. United States Department of Agriculture, September 2000. http://dx.doi.org/10.32747/2000.7574341.bard.

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Research activities in both our laboratories were directed toward development of control of the FLP/frt recombination system for plants. As described in the text of the research proposal, the US lab has been engaged in developing regulatory strategies such as tissue-specific promoters and the steroid-inducible activation of the FLP enzyme while the main research activities in Israel have been directed toward the development and testing of a copper-regulated expression of flp recombinase in tobacco (this is an example of a promoter activation by metal ions). The Israeli lab hat additionally com

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