Добірка наукової літератури з теми "Palindrome analyser"

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Статті в журналах з теми "Palindrome analyser":

1

Cunningham, Lesley A., Atina G. Coté, Cennet Cam-Ozdemir, and Susanna M. Lewis. "Rapid, Stabilizing Palindrome Rearrangements in Somatic Cells by the Center-Break Mechanism." Molecular and Cellular Biology 23, no. 23 (December 1, 2003): 8740–50. http://dx.doi.org/10.1128/mcb.23.23.8740-8750.2003.

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ABSTRACT DNA palindromes are associated with rearrangement in a variety of organisms. A unique opportunity to examine the impact of a long palindrome in mammals is afforded by the Line 78 strain of mice. Previously it was found that the transgene in Line 78 is likely to be palindromic and that the symmetry of the transgene was responsible for a high level of germ line instability. Here we prove that Line 78 mice harbor a true 15.4-kb palindrome, and through the establishment of cell lines from Line 78 mice we have shown that the palindrome rearranges at the impressive rate of about 0.5% per population doubling. The rearrangements observed to arise from rapid palindrome modification are consistent with a center-break mechanism where double-strand breaks, created through hairpin nicking of an extruded cruciform, are imprecisely rejoined, thus introducing deletions at the palindrome center. Significantly, palindrome rearrangements in somatic tissue culture cells almost completely mirrored the structures generated in vivo in the mouse germ line. The close correspondence between germ line and somatic events indicates the possibility that center-break modification of palindromes is an important mechanism for preventing mutation in both contexts. Permanent cell lines carrying a verified palindrome provide an essential tool for future mechanistic analyses into the consequences of palindromy in the mammalian genome.
2

Brázda, Václav, Jan Kolomazník, Jiří Lýsek, Lucia Hároníková, Jan Coufal, and Jiří Št'astný. "Palindrome analyser – A new web-based server for predicting and evaluating inverted repeats in nucleotide sequences." Biochemical and Biophysical Research Communications 478, no. 4 (September 2016): 1739–45. http://dx.doi.org/10.1016/j.bbrc.2016.09.015.

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3

Brázda, Václav, Jiří Lýsek, Martin Bartas, and Miroslav Fojta. "Complex Analyses of Short Inverted Repeats in All Sequenced Chloroplast DNAs." BioMed Research International 2018 (July 24, 2018): 1–10. http://dx.doi.org/10.1155/2018/1097018.

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Chloroplasts are key organelles in the management of oxygen in algae and plants and are therefore crucial for all living beings that consume oxygen. Chloroplasts typically contain a circular DNA molecule with nucleus-independent replication and heredity. Using “palindrome analyser” we performed complete analyses of short inverted repeats (S-IRs) in all chloroplast DNAs (cpDNAs) available from the NCBI genome database. Our results provide basic parameters of cpDNAs including comparative information on localization, frequency, and differences in S-IR presence. In a total of 2,565 cpDNA sequences available, the average frequency of S-IRs in cpDNA genomes is 45 S-IRs/per kbp, significantly higher than that found in mitochondrial DNA sequences. The frequency of S-IRs in cpDNAs generally decreased with S-IR length, but not for S-IRs 15, 22, 24, or 27 bp long, which are significantly more abundant than S-IRs with other lengths. These results point to the importance of specific S-IRs in cpDNA genomes. Moreover, comparison by Levenshtein distance of S-IR similarities showed that a limited number of S-IR sequences are shared in the majority of cpDNAs. S-IRs are not located randomly in cpDNAs, but are length-dependently enriched in specific locations, including the repeat region, stem, introns, and tRNA regions. The highest enrichment was found for 12 bp and longer S-IRs in the stem-loop region followed by 12 bp and longer S-IRs located before the repeat region. On the other hand, S-IRs are relatively rare in rRNA sequences and around introns. These data show nonrandom and conserved arrangements of S-IRs in chloroplast genomes.
4

Nobile, C., J. Nickol, and R. G. Martin. "Nucleosome phasing on a DNA fragment from the replication origin of simian virus 40 and rephasing upon cruciform formation of the DNA." Molecular and Cellular Biology 6, no. 8 (August 1986): 2916–22. http://dx.doi.org/10.1128/mcb.6.8.2916.

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Nucleosomes were reconstituted in vitro from a fragment of DNA spanning the simian virus 40 minimal replication origin. The fragment contains a 27-base-pair palindrome (perfect inverted repeat). DNA molecules with stable cruciform structures were generated by heteroduplexing this DNA fragment with mutants altered within the palindromic sequence (C. Nobile and R. G. Martin, Int. Virol., in press). Analyses of the structural features of the reconstituted nucleosomes by the DNase I footprint technique revealed two alternative DNA-histone arrangements, each one accurately phased with respect to the uniquely labeled DNA ends. As linear double-stranded DNA, a unique core particle was formed in which the histones strongly protected the regions to both sides of the palindrome. The cruciform structure seemed to be unable to associate with core histones and, therefore, an alternative phasing of the histone octamer along the DNA resulted. Thus, nucleosome positioning along a specific DNA sequence appears to be influenced in vitro by the secondary structure (linear or cruciform) of the 27-base-pair palindrome. The formation of cruciform structures in vivo, if they occur, might therefore represent a molecular mechanism by which nucleosomes are phased.
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Nobile, C., J. Nickol, and R. G. Martin. "Nucleosome phasing on a DNA fragment from the replication origin of simian virus 40 and rephasing upon cruciform formation of the DNA." Molecular and Cellular Biology 6, no. 8 (August 1986): 2916–22. http://dx.doi.org/10.1128/mcb.6.8.2916-2922.1986.

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Nucleosomes were reconstituted in vitro from a fragment of DNA spanning the simian virus 40 minimal replication origin. The fragment contains a 27-base-pair palindrome (perfect inverted repeat). DNA molecules with stable cruciform structures were generated by heteroduplexing this DNA fragment with mutants altered within the palindromic sequence (C. Nobile and R. G. Martin, Int. Virol., in press). Analyses of the structural features of the reconstituted nucleosomes by the DNase I footprint technique revealed two alternative DNA-histone arrangements, each one accurately phased with respect to the uniquely labeled DNA ends. As linear double-stranded DNA, a unique core particle was formed in which the histones strongly protected the regions to both sides of the palindrome. The cruciform structure seemed to be unable to associate with core histones and, therefore, an alternative phasing of the histone octamer along the DNA resulted. Thus, nucleosome positioning along a specific DNA sequence appears to be influenced in vitro by the secondary structure (linear or cruciform) of the 27-base-pair palindrome. The formation of cruciform structures in vivo, if they occur, might therefore represent a molecular mechanism by which nucleosomes are phased.
6

Higa, M., T. Kitahashi, Y. Sasaki, H. Okada, and H. Ando. "Distinct promoter sequences of two precursor genes for salmon gonadotropin-releasing hormone in masu salmon." Journal of Molecular Endocrinology 19, no. 2 (October 1, 1997): 149–61. http://dx.doi.org/10.1677/jme.0.0190149.

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Two types of genes encode salmon gonadotropin-releasing hormone (sGnRH), which is thought to act on both sexual maturation and reproductive behavior, in salmonids. We characterized the two sGnRH genes (sGnRH-I and -II) and their upstream regions in masu salmon, Oncorhynchus masou, since such information is a prerequisite for molecular approaches to salmon reproduction. The two genes have similar exon-intron structures composed of four exons and three introns. Sequence analyses of the two genes showed that coding regions are highly conserved, but upstream regions are distinctively divergent. In the upstream regions, only the sGnRH-II gene has a large palindromic sequence, which has been proposed to be involved in control of transcription via estrogen receptors. In contrast, the sGnRH-I gene is missing the large palindromic sequence, but has three distinct palindromes in the upstream region. These results may suggest divergent transcription regulatory mechanisms between the two sGnRH genes in masu salmon. The differences in the upstream regions of sGnRH genes in Atlantic salmon (Salmo salar), sockeye salmon (Oncorhynchus nerka) and masu salmon are discussed with respect to the evolution of sGnRH genes in salmonid fish.
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Ahmad, Sk Safique. "Perturbation analysis for palindromic and anti-palindromic nonlinear eigenvalue problems." ETNA - Electronic Transactions on Numerical Analysis 51 (2019): 151–68. http://dx.doi.org/10.1553/etna_vol51s151.

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Anderson, S. J., S. Miyake, and D. Y. Loh. "Transcription from a murine T-cell receptor V beta promoter depends on a conserved decamer motif similar to the cyclic AMP response element." Molecular and Cellular Biology 9, no. 11 (November 1989): 4835–45. http://dx.doi.org/10.1128/mcb.9.11.4835.

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We identified a regulatory region of the murine V beta promoter by both in vivo and in vitro analyses. The results of transient transfection assays indicated that the dominant transcription-activating element within the V beta 8.3 promoter is the palindromic motif identified previously as the conserved V beta decamer. Elimination of this element, by linear deletion or specific mutation, reduced transcriptional activity from this promoter by 10-fold. DNase I footprinting, gel mobility shift, and methylation interference assays confirmed that the palindrome acts as the binding site of a specific nuclear factor. In particular, the V beta promoter motif functioned in vitro as a high-affinity site for a previously characterized transcription activator, ATF. A consensus cyclic AMP response element (CRE) but not a consensus AP-1 site, can substitute for the decamer in vivo. These data suggest that cyclic AMP response element-binding protein (ATF/CREB) or related proteins activate V beta transcription.
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Anderson, S. J., S. Miyake, and D. Y. Loh. "Transcription from a murine T-cell receptor V beta promoter depends on a conserved decamer motif similar to the cyclic AMP response element." Molecular and Cellular Biology 9, no. 11 (November 1989): 4835–45. http://dx.doi.org/10.1128/mcb.9.11.4835-4845.1989.

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We identified a regulatory region of the murine V beta promoter by both in vivo and in vitro analyses. The results of transient transfection assays indicated that the dominant transcription-activating element within the V beta 8.3 promoter is the palindromic motif identified previously as the conserved V beta decamer. Elimination of this element, by linear deletion or specific mutation, reduced transcriptional activity from this promoter by 10-fold. DNase I footprinting, gel mobility shift, and methylation interference assays confirmed that the palindrome acts as the binding site of a specific nuclear factor. In particular, the V beta promoter motif functioned in vitro as a high-affinity site for a previously characterized transcription activator, ATF. A consensus cyclic AMP response element (CRE) but not a consensus AP-1 site, can substitute for the decamer in vivo. These data suggest that cyclic AMP response element-binding protein (ATF/CREB) or related proteins activate V beta transcription.
10

He, Tian-Xiao, and Louis Shapiro. "Palindromes and pseudo-involution multiplication." Linear Algebra and its Applications 593 (May 2020): 1–17. http://dx.doi.org/10.1016/j.laa.2020.01.031.

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Дисертації з теми "Palindrome analyser":

1

Šedý, Michal. "Analýza lokalizace inverzních repetic v bakteriálních genomech." Master's thesis, Vysoké učení technické v Brně. Fakulta chemická, 2021. http://www.nusl.cz/ntk/nusl-449791.

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Inverted repeats (IR) are common part of DNA of all living prokaryotic and eukaryotic organisms. Inverted repeats plays an important role in the regulation of basics cells processes. They are responsible for formation of cruciform structures. Inverted repeats also cause genomic instability and can be a source of numerous mutations. Cruciform structures can be recognized by DNA-binding proteins and can also act as a transcriptional regulators. Using the Palindrome Analyser tool, the frequency of IR and localization of inverted repeats in bacterial genomes was analyzed. The frequency of IR across the bacterial genome is variable. The frequency of short inverted repeats shows an approximately quadratic dependence on the %GC content in the genome with a minimum of about 50% of GC content. The localization of inverted repeats with respect to “annotated features” show a non-random distribution. The frequency of IR for most features is higher “outside” than “inside”.
2

Pirillo, Giuseppe. "Contribution à la combinatoire des mots." Paris 7, 2007. http://www.theses.fr/2007PA077159.

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Nous étudions: a)un cas spécial de régularités inévitables, la répétitivité introduite et étudiée par Justin et liée aux résultats de Thue, au Théorème de Ramsey, et au Théorème de van der Waerden; b)la notion de semi-groupe permutable (liée au théorème de Shirshov) et certaines conditions de finitude des semi-groupes finiment engendrés; c)les mots Sturmiens (dont l'étude, très ancienne, a récemment progressé surtout par les nombreuses et intéressantes contributions de Berstel) et les mots épisturmiens. Nous mentionnons également quelques-unes de nos contributions récentes à la biologie théorique et certaines contributions à la didactique de la mathématique et de l'informatique. Ce travail n'est pas un survol (tour d'horizon) de l'état de nos recherches, et ne contient pas une analyse détaillée des résultats déjà obtenus, mais c'est un moment de réflexion pour mieux organiser nos recherches futures
We study: a)a special case of unavoidable reguiarities, the repetitivity introduced and studied by Justin. This field is in relation with the results of Thue, the Theorem of Ramsey and the Theorem of van der Waerden; b) the notion of permutable semigroupe (in relation with the Theorem of Shirshov) and some finiteness conditions forfinitely generated semigroups. C) the Sturmians words (of which the study, very old, has recently progressed under the impulsion of many interesting contributions of Berstel) and the episturmian words. We also mention some our recent contributions to the theoretical biology and some contributions to mathematical and computer science education. This work is not a survey of our research activity and does not contain a detailed analysis of our results but is a moment of reflexion in order to better organize our future work
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Sutharzan, Sreeskandarajan. "A GENOME-WIDE ANALYSIS OF PERFECT INVERTED REPEATS IN ARABIDOPSIS THALIANA." Miami University / OhioLINK, 2013. http://rave.ohiolink.edu/etdc/view?acc_num=miami1386848607.

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Maurer, Kathleen M. "Ned Rorem’s Poems of Love and the Rain and Paul Hindemith’s Hin und züruck: An Analysis of Two Twentieth-Century Vocal Works With an Emphasis On the Use of Mirror Form." University of Cincinnati / OhioLINK, 2007. http://rave.ohiolink.edu/etdc/view?acc_num=ucin1186589055.

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Altay, Dede Neslihan. "Characterization Of Lactobacillus Delbrueckii Subspecies Bulgaricus And Streptococcus Thermophilus As Lactic Cultures Isolated From Traditional Turkish Yogurts And Subtyping Of Streptococcus Thermophilus Using Crispr Analysis And Mlst." Phd thesis, METU, 2010. http://etd.lib.metu.edu.tr/upload/3/12612009/index.pdf.

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Yogurt is a characteristic fermented dairy product of Turkey and Bulgaria and its popularity has been increasing all over the world. Streptococcus thermophilus and Lactobacillus delbrueckii subsp. bulgaricus (Lactobacillus bulgaricus) are used together as starter culture in production of yogurt. The objective of this study was to isolate and characterize yogurt cultures from traditionally produced yogurts (i.e. produced without using commercial starter cultures) and to search the genotypic diversity within traditional S. thermophilus isolates. Yogurt cultures were isolated from traditionally produced yogurts collected from different regions of Turkey and identified biochemically. Acidification ability of the isolates was examined and the cultures giving best acidifying rates were further subjected to a selection in terms of their acetaldehyde production ability. Then, phage resistance and proteolytic activity of chosen isolates were tested. Finally, twenty-five L. bulgaricus and twenty-two S. thermophilus isolates were selected as cultures having best technological properties. Furthermore, subtyping studies were carried out to indicate strain diversity among isolates. S. thermophilus was selected as target organism for subtyping in this study. Clustered regularly interspaced short palindromic repeats (CRISPR) loci are highly polymorphic genetic regions, which are composed of partially palindromic direct repeats interspaced by sequences called spacers. In order to characterize S. thermophilus isolates genotypically, CRISPR1 locus of the isolates were analyzed. Additionally, nineteen isolates selected after CRISPR1 analysis were characterized using multilocus sequence typing (MLST). This provided to compare CRISPR1 analysis with MLST as a typing method. According to CRISPR1 analysis S. thermophilus isolates were grouped into 6 main clusters with a total of 15 sub-clusters. MLST results demonstrated an evolutionary relationship among these strains compatible with that derived from the CRISPR1 analysis.
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Jacoby, Derek. "The Music of Lee Hyla| An Analysis of the First Movement of Concerto for Piano and Chamber Orchestra no. 2 and a Survey of Stylistic Elements in His Music, and an original composition, "Palindromic One| Number 31", for seven players." Thesis, Brandeis University, 2013. http://pqdtopen.proquest.com/#viewpdf?dispub=3562303.

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The first part of this dissertation is a detailed analysis of the first movement of Lee Hyla’s Concerto for Piano and Chamber Orchestra no. 2 (1991). The second part documents stylistic elements over the course of his compositional output.

The Concerto will serve as the focal point of analysis for two reasons. First, Hyla uses a more surface-level and audible musical narrative, a type of narrative he began employing in his music between 1981 and 1983. The Concerto, coming eight to ten years later, is sufficiently removed from the initial works, allowing this technique time to further develop. By 1991, other important facets of his approach emerged, elements employed in many compositions that followed, including some of his most recent.

The second reason for the selection of the Concerto pertains to the exact type of narrative employed. In Hyla’s compositions, the musical narrative ranges from almost completely flowing, in which most sections seamlessly transition to the next, to almost completely juxtaposed, in which blocks of contrasting music are linked with little or no transition. In the middle, there is a large gray area representing a merger of the two, partially flowing and partially juxtaposed. This is where the Concerto is found.

The second part of this analysis will examine several stylistic elements of Hyla’s larger style. Through numerous examples, drawn from well over a dozen pieces composed from 1978 to present, further light will be shed on some of the consistent compositional techniques found in Hyla’s music.

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Deyell, Matthew. "Multiplexed Genetic Perturbations of the Regulatory Network of E. coli." Thesis, Sorbonne Paris Cité, 2018. http://www.theses.fr/2018USPCC175/document.

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Malgré les progrès réalisés dans le séquençage de l’ADN, nous n’avons pas encore compris comment le phénotype d’un organisme se rapporte au contenu de son génome. Cependant, il est devenu clair que l'impact des gènes dépend du contexte. La simple présence d'un gène dans un génome ne nous informe pas du moment où il est exprimé et des autres gènes qui y sont exprimés. Comprendre comment l'expression des gènes est régulée est un élément nécessaire pour comprendre comment les phénotypes émergent d'un génotype donné. Les facteurs de transcription, qui peuvent activer ou réprimer l'expression d'un gène, forment un réseau complexe d'interactions entre eux et leurs gènes ciblés. Ce réseau consiste en une hiérarchie de groupes de facteurs de transcription fortement liés, chacun lié à des processus cellulaires distincts. La structure de ce réseau de régulation transcriptionnelle est-elle significative pour la réponse transcriptionnelle d'une cellule? Ici, nous utilisons une protéine de liaison à l'ADN programmable appelée CRISPR (répétitions courtes palindromiques groupées régulièrement) pour perturber l'expression génique des régulateurs globaux au sein du réseau de régulation transcriptionnelle. Ces régulateurs mondiaux régulent de nombreux processus cellulaires distincts et ont de nombreuses cibles génétiques. Le système CRISPR nous permet de perturber ces régulateurs dans toutes les combinaisons possibles, y compris les perturbations d'ordre supérieur avec tous les régulateurs mondiaux potentiellement ciblés perturbés en même temps. Nous enregistrons ensuite à la fois le modèle d'expression du transciptome en utilisant le séquençage de l'ARN et l'adéquation de chaque souche. Nous trouvons que la structure du réseau de régulation augmente la dimensionnalité de la réponse transcriptionnelle plutôt que de la réduire. Cela se traduit par une épistasie importante au-delà des interactions par paires. Cela a des implications sur la façon dont ces réseaux évoluent. L'épistasie par paires que nous trouvons entre les facteurs de transcription globaux repose sur la présence ou l'absence d'autres perturbations. Cela implique que d'autres perturbations pourraient agir comme des mutations de potentialisation. Le nombre de voies d'évolution potentielles augmente avec les épistasies d'ordre élevé, même si cela ne nous dit rien sur la qualité de ces voies. Fait important, les répliques de cette thèse sont toujours en cours et les données présentées ici n’ont pas encore exclu les artefacts expérimentaux
Despite advances in DNA sequencing, we have yet to understand how an organism’s phenotype relates to the contents of their genome. However it has become clear that the impact of genes are context dependant. The mere presence of a gene within a genome does not inform us of when it is expressed, and which other genes are expressed along with it. Understanding how gene expression is regulated is a necessary piece of understanding how phenotypes emerge from a given genotype. Transcription factors, which can activate or repress the expression of a gene, form a complex network of interactions between themselves and their targeted genes. This network consists of a hierarchy of groups of strongly connected transcription factors, each relating to distinct cellular processes. Is the structure of this transcriptional regulatory network significant to the transcriptional response of a cell? Here we use a programmable DNA binding protein called CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) to perturb gene expression of global regulators within the transcriptional regulatory network. These global regulators are regulating many distinct cellular processes and have many genetic targets. The CRISPR system allows us to perturb these regulators in all possible combinations, including higher order perturbations with potentially all targeted global regulators perturbed at the same time. We then record both the expression pattern of the transciptome using RNA sequencing, and the fitness of each strain. We find that the structure of the regulatory network increases the dimensionality of the transcriptional response rather than reducing it. This results in significant high order epistasis beyond pair-wise interactions. This has implications for how these networks evolve. The pair-wise epistasis we find between global transcription factors rely on the presence or absence of other perturbations. This implies that other perturbations could act as potentiating mutations. The number of potential evolutionary paths increases with high order epistasis, although this alone tells us nothing about the quality of those paths. Importantly, the replicates for this thesis are still on-going and the data presented here has not yet excluded experimental artefacts
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Cote, Atina. "In Vivo Analysis of Cruciform Extrusion and Resolution of DNA Palindromes in Eukaryotes." Thesis, 2009. http://hdl.handle.net/1807/17746.

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DNA palindromes are implicated in several examples of gross chromosomal aberrations in the human genome, however, the molecular mechanism(s) that govern palindrome instability are largely under-investigated. Because of their propensity for intrastrand base pairing, it is suspected that the acquisition of a secondary structure, such as a hairpin or cruciform, instigates the rearrangement process. A significant hurdle in defining palindrome-provoked instability lies in the fact that reliable methods for examining in vivo cruciform extrusion remain underdeveloped. A challenge is to provide straightforward evidence for cruciform extrusion in eukaryotic cells. Here, I present a plasmid system for use in Saccharomyces cerevisiae that enables for the detection of cruciforms in vivo. Cruciform extrusion, of either an in vitro-prepared palindrome or a near-palindrome from the human genome, is monitored by scoring for the product of cruciform resolution, being a dually hairpin-capped linear DNA molecule. These results not only provide evidence for the occurrence of cruciform extrusion in eukaryotic chromatin, they also identify a novel source of endogenous double strand break formation. A screen for candidate genes that are required for resolution revealed that the Mus81 Endonuclease, a candidate Holliday junction resolvase, provides the majority of cruciform resolution activity in mitotic cells, validating the notion that cellular HJ resolvases can misrecognize a cruciform for a Holliday junction. A second screen identified a requirement for the Sgs1-Top3-Rmi1 complex in the prevention of double strand break formation, including cruciform resolution, of DNA palindromes. These results uncover a new role for the RecQ helicase in prevention of palindrome-provoked instability, possibly through the intrusion of cruciform structures. Together, this work contributes significantly to our understanding of cruciform metabolism in eukaryotes and supports suggestions that cruciform extrusion instigates instability in the human genome.
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Wei, Chia-chen, and 魏嘉成. "Perturbation Analysis of Structure-Preserving Algorithms for the Palindromic Quadratic Eigenvalue Problems." Thesis, 2009. http://ndltd.ncl.edu.tw/handle/57624243216411979880.

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碩士
國立成功大學
數學系應用數學碩博士班
97
In this paper, we consider the perturbation analysis corresponding to the palindromic quadratic eigenvalue problem $(lambda^{2}A_{1}^{ op}+lambda A_{0}+A_{1})x=0$, where $A_{0}^{ op}=A_{0}$ and $A_{0},A_{1}inBbb{C}^{n imes n}$. The palindromic structure of the coefficient matrices of the quadratic eigenvalue problem shows the reciprocal characteristic for the eigenvalues. In order to solve the eigenvalue problem efficiently and accurately, preserving the reciprocal property is significant. In $2006$, Mackey et al. [17] proposed a palindromic linearization for the problem and in $2007$, Qian et al. [21] gave another linearization for the problem which transfers the palindromic quadratic eigenvalue problem to an enlarged symplectic generalized eigenvalue problem. Moreover, there are two more typical structure-preserving algorithms for solving the corresponding generalized eigenvalue problems in [23,21] which are called URV-based method and Patel-like algorithm, respectively. Recently, Lin [21] shows an equivalent relation between URV-based method and Patel-like algorithm so that the computation cost for the first type linearization using URV-based method is about a double more than that for the second type linearization using the Patel-like algorithm. Based on the idea of Tisseur [25], we compare the condition number of both generalized eigenvalue problems. We hence conclude that the computed eigenvalues of the second type linearization can be computed more accurate than that of the first type. Finally, numerical implementation illustrates the conclusions above.
10

Schröder, Christian [Verfasser]. "Palindromic and even eigenvalue problems - analysis and numerical methods / vorgelegt von Christian Schröder." 2008. http://d-nb.info/989328422/34.

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Книги з теми "Palindrome analyser":

1

Symonds, Dominic. “You’ve Got to Be Carefully Taught”. Edited by Robert Gordon. Oxford University Press, 2014. http://dx.doi.org/10.1093/oxfordhb/9780195391374.013.0003.

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This chapter explores some of the influence Sondheim’s mentor Oscar Hammerstein II may have had on the composer. With close analysis of the ways in which lyric patterning guided the structure of the music in several Rodgers and Hammerstein shows, the chapter suggests that one of their primary contributions to musical theater was to structure the dramatic dynamic of a show into the score through a use of extended song-form. I note in particular the way this works inCarousel(1945),Allegro(1947), andSouth Pacific(1949). The chapter then speculates about how Sondheim has developed this technique through a modular montaging of scenes and through the creation of palindromic trajectories within a whole show inA Little Night Music(1973) andSunday in the Park with George(1984).

Частини книг з теми "Palindrome analyser":

1

Hooda, Amit, Michael M. Bronstein, Alexander M. Bronstein, and Radu P. Horaud. "Shape Palindromes: Analysis of Intrinsic Symmetries in 2D Articulated Shapes." In Lecture Notes in Computer Science, 665–76. Berlin, Heidelberg: Springer Berlin Heidelberg, 2012. http://dx.doi.org/10.1007/978-3-642-24785-9_56.

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2

Ghosh, Debashis, and Anant P. Godbole. "Palindromes in Random Letter Generation: Poisson Approximations, Rates of Growth,and Erdös-Rényi Laws." In Athens Conference on Applied Probability and Time Series Analysis, 99–115. New York, NY: Springer New York, 1996. http://dx.doi.org/10.1007/978-1-4612-0749-8_7.

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3

Neima, Paul E., Joan Burnside, Katrina Elsaesser, Harry Hwang, Bruce E. Clurman, Robert Kimmel, and Jeff Delrow. "Analysis of gene expression, copy number and palindrome formation with a DT40 enriched CDNA microarray." In Subcellular Biochemistry, 245–56. Dordrecht: Springer Netherlands, 2006. http://dx.doi.org/10.1007/978-1-4020-4896-8_14.

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4

Botelho, Ana, Ana Canto, Célia Leão, and Mónica V. Cunha. "Clustered Regularly Interspaced Short Palindromic Repeats (CRISPRs) Analysis of Members of the Mycobacterium tuberculosis Complex." In Veterinary Infection Biology: Molecular Diagnostics and High-Throughput Strategies, 373–89. New York, NY: Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-2004-4_27.

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5

Chiang, Cheng-Ta, Yuyun Liao, and Mi Lu. "Performance Analysis of the Palindrome Network." In Advances in Parallel Computing, 673–80. Elsevier, 1998. http://dx.doi.org/10.1016/s0927-5452(98)80086-5.

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6

Burnetts, Charles. "Sentiment and the ‘Smart’ Melodrama." In Improving Passions. Edinburgh University Press, 2017. http://dx.doi.org/10.3366/edinburgh/9780748698196.003.0007.

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Examines the ‘camp’ sensibility of two contemporary art-films, Lars von Trier’s Dancer in the Dark (2000) and Todd Solondz’ Palindromes (2004), focusing in particular on their respective treatments of melodrama as a genre attuned to the experience and suffering of women in US society. Meditating on the problem of gender and childhood in pastoral America, the analysis seeks to explore the negotiation of sentimentalist conventions borrowed from traditional film genres like the musical and the ‘maternal melodrama’, focusing in particular on issues of ‘play’ and camp performance. The discussion thus raises problems introduced in earlier chapters with regards to the self-reflexive bracketing of sentimentality as a discourse of sincerity and ethical subjectivity, emphasising its ambiguous presence in the art-film as a mode of fantasy and self-reflexive mythologizing.
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Zobrist, Jacob D., Morgan McCaw, Minjeong Kang, Alan L. Eggenberger, Keunsub Lee, and Kan Wang. "Genome editing of maize." In Genome editing for precision crop breeding, 341–76. Burleigh Dodds Science Publishing, 2021. http://dx.doi.org/10.19103/as.2020.0082.19.

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Developed over thousands of years largely through human intervention, the modern maize genome can now be precisely modified for agricultural improvement and scientific research. This chapter focuses on progress made in recent decades utilizing site-specific nuclease (SSN) technologies in maize genome engineering. Many SSNs, such as meganucleases, zinc finger nucleases (ZFNs), transcription activator-like effector nucleases (TALENs) and clustered regularly interspaced short palindromic repeat (CRISPR)/CRISPR-associated proteins (Cas) have been used in maize for both functional analysis and trait improvement. The chapter summarizes the recent innovations related to maize genome editing using SSN technologies, the type of approaches, target genes and traits, and reagent delivery methods. It also discusses the current challenges as well as potential improvements for maize genome engineering protocols.

Тези доповідей конференцій з теми "Palindrome analyser":

1

Huang, Chien-Hung, Sheng-Jia Weng, Praveen Kumar Korla, Jywe-Fei Fang, Jeffrey J. P. Tsai, Nilubon Kurubanjerdjit, and Ka-Lok Ng. "Identification and Analysis of Palindromes for RNA Sequences." In 2016 IEEE 16th International Conference on Bioinformatics and Bioengineering (BIBE). IEEE, 2016. http://dx.doi.org/10.1109/bibe.2016.35.

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