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Статті в журналах з теми "SNuPE analyses"

Автор: Grafiati

Опубліковано: 3 червня 2025

Оновлено: 31 липня 2025

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1

Yuskianti, Vivi, Fa Xin Huang, Bian Xiang Zhang, and Susumu Shiraishi. "Diagnosis of interspecific hybrids between Acacia mangium and A. auriculiformis using single nucleotide polymorphism (SNP) markers." Silvae Genetica 60, no. 1-6 (2011): 85–92. http://dx.doi.org/10.1515/sg-2011-0012.

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AbstractThis paper describes a diagnostic system to verify interspecific hybrids betweenAcacia mangiumandA. auriculiformisusing single nucleotide polymorphism (SNP) markers. Forty-eight DNA fragments were selected based on random amplified polymorphic DNAs (RAPD) amplified across 48 individuals from each parental species, and were transformed into 44 sequence-characterized amplified region (SCAR) markers. Five SNP markers that generated species-specific alleles for each species were selected from the 28 sequenced SCARs. A multiplex single nucleotide primer extension (SNuPE) analyses of the fiv

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2

Maria, Saponari, D'attoma Giusy, Montes Borrego Miguel, De La Fuente Leonardo, Loconsole Giuliana, and Beatriz Landa Blanca. "RAPID SCREENING TESTS FOR DIFFERENTIATING XYLELLA FASTIDIOSA ISOLATES." Journal of Plant Pathology (2016) 98 (Supplement) (December 1, 2016): S27. https://doi.org/10.5281/zenodo.268883.

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The bacterial pathogen Xylella fastidiosa (Xf) is characterized by a wide plant host range and insect vectors, and on the basis of phylogenetic studies it was subdivided into different subspecies. Results from strain typing, phylogenetic analyses, and other data comparisons have shown that phylogenetic clusters exhibit hostbased genetic relationships. Until now, different molecular tests can be used for the differentiation of Xf isolates, among which MLST/ MLSA represents the most common method to determine classification and phylogenetic placement of novel isolates. Xf outbreaks in EU motivat

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3

Vebø, Heidi C., Monika Sekelja, Ragnhild Nestestog, et al. "Temporal Development of the Infant Gut Microbiota in Immunoglobulin E-Sensitized and Nonsensitized Children Determined by the GA-Map Infant Array." Clinical and Vaccine Immunology 18, no. 8 (2011): 1326–35. http://dx.doi.org/10.1128/cvi.00062-11.

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ABSTRACTAt birth, the human infant gut is sterile, but it becomes fully colonized within a few days. This initial colonization process has a major impact on immune development. Our knowledge about the correlations between aberrant colonization patterns and immunological diseases, however, is limited. The aim of the present work was to develop the GA-map (Genetic Analysis microbiota array platform) infant array and to use this array to compare the temporal development of the gut microbiota in IgE-sensitized and nonsensitized children during the first 2 years of life. The GA-map infant array is

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4

Daskalakis, Michael, Tudung T. Nguyen, Carvell Nguyen, et al. "Demethylation of a hypermethylated P15/INK4B gene in patients with myelodysplastic syndrome by 5-Aza-2′-deoxycytidine (decitabine) treatment." Blood 100, no. 8 (2002): 2957–64. http://dx.doi.org/10.1182/blood.v100.8.2957.

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p16 and p15, 2 inhibitors of cyclin-dependent kinases, are frequently hypermethylated in hematologic neoplasias. Decitabine, or 5-Aza-2′-deoxycytidine, reverts hypermethylation of these genes in vitro, and low-dose decitabine treatment improves cytopenias and blast excess in ∼50% of patients with high-risk myelodysplastic syndrome (MDS). We examined p15and p16 methylation status in bone marrow mononuclear cells from patients with high-risk MDS during treatment with decitabine, using a methylation-sensitive primer extension assay (Ms-SNuPE) to quantitate methylation, and denaturing gradient gel

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5

Yuskianti, Vivi, and Susumu Shiraishi. "GENETIC DIVERSITY AND GENETIC RELATIONSHIP OF SENGON (Falcataria moluccana) REVEALED USING SINGLE NUCLEOTIDE POLYMORPHISM (SNP) MARKERS." Indonesian Journal of Forestry Research 4, no. 2 (2017): 85–94. https://doi.org/10.20886/ijfr.2017.4.2.85-94.

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Producing seeds in seed orchards that retain a broad genetic diversity is important for the continued development of a species. The aim of this study was to find out the genetic diversity of, and genetic relationships between several populations of sengon (<em>Falcataria moluccana</em>) in the Candiroto seed orchard in Indonesia. Analysis using  twelve single nucleotide polymorphism (SNP) markers showed that the total population had a high level of genetic diversity (<em>H</em>e = 0.359±0.128); the Wamena population in Papua had the highest level. The close genetic relationship bet

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6

Castellsague, E., S. González, I. Blanco, et al. "APC germ-line allele-specific expression in familial adenomatous polyposis." Journal of Clinical Oncology 27, no. 15_suppl (2009): e22037-e22037. http://dx.doi.org/10.1200/jco.2009.27.15_suppl.e22037.

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e22037 Background: About 13% of Familial Adenomatous Polyposis (FAP) families and 70% of Attenuated FAP families remain with unknown molecular pathogenic cause after APC and MYH mutational analyses. Also, mutations can affect specific allele expression (ASE) at the germline level. The aim of the study was to determine the presence of germline ASE in the APC gene in FAP and AFP with and without detectable APC or MYH mutations. Methods: Germline RNA from fresh frozen and/or cultured lymphocytes of 17 APC/MYH-negative Polyposis (7 FAP, 10 AFAP) families (21 individuals) and 35 APC-mutated Polypos

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7

Shepherd, Lara D., Mariana Bulgarella, Oliver Haddrath, and Colin M. Miskelly. "Genetic analyses reveal an unexpected refugial population of subantarctic snipe (Coenocorypha aucklandica)." Notornis 67, no. 1 (2020): 403. https://doi.org/10.63172/035228znelna.

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Auckland Island snipe (Coenocorypha aucklandica aucklandica) are presumed to have occurred throughout the Auckland Island archipelago but became restricted to a subset of the islands following mammal introductions. Snipe were known to have survived on Adams Island, Ewing Island, and Disappointment Island. However, it is uncertain whether snipe were continually present on Enderby Island and/or adjacent Rose Island. These islands lie near Ewing Island, and both hosted a suite of introduced mammals until the last species were eradicated in 1993. Using SNPs generated by ddRAD-Seq we identified fou

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8

Kurniawati, Neni. "The Role of Severus Snape in The Harry Potter Series by J. K. Rowling: Deconstruction Perspective." Allure Journal 4, no. 2 (2024): 72–82. http://dx.doi.org/10.26877/allure.v4i2.18321.

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This paper aims to find out the real role of Severus Snape in the Harry Potter book series by J. K. Rowling. This research is also intended to describe Severus Snape's efforts in defeating Lord Voldemort as well as to figure out the characterization and description of the actions taken by Snape; the writer uses a deconstruction analysis proposed by Jacques Derrida. The image of Severus Snape's character and the relationship between the character's image and the forms of deconstruction are identified by the deconstruction analysis. The method used in this research is the descriptive qualitative

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9

Suwastini, Ni Komang Arie, Luh Gede Eka Wahyuni, Luh Winda Agustina, Erika Citra Sari Hartanto, and Ni Nyoman Artini. "The Characterizations of Professor Snape in J. K. Rowling’s Harry Potter And The Philosopher’s Stone." International Journal of Language and Literature 6, no. 1 (2023): 20–34. http://dx.doi.org/10.23887/ijll.v6i1.34943.

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J. K. Rowling’s Harry Potter and the Philosopher's Stone has presented readers with different unique teachers. Even though Rowling’s series disclose Professor Snape as a hero, the first novel depicted him as an insufferable character set to thwart the main characters’ adventure. This study aimed to provide more objective portrayals of Professor Snape through interactive qualitative data analysis. The subject of the study is J. K. Rowling’s Harry Potter and the Philosopher’s Stone. Meanwhile, the characterizations of Professor Snape become the object of the study. As the main instrument of data

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10

Nikolausz, Marcell, Antonis Chatzinotas, Márton Palatinszky, Gwenaël Imfeld, Paula Martinez, and Matthias Kästner. "Single-Nucleotide Primer Extension Assay for Detection and Sequence Typing of “Dehalococcoides” spp." Applied and Environmental Microbiology 74, no. 1 (2007): 300–304. http://dx.doi.org/10.1128/aem.01600-07.

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ABSTRACT A single-nucleotide primer extension (SNuPE) assay in combination with taxon-specific 16S rRNA gene PCR analysis was developed for the detection and typing of populations of the genus “Dehalococcoides”. The specificity of the assay was evaluated with 16S rRNA gene sequences obtained from an isolate and an environmental sample representing two Dehalococcoides subgroups, i.e., the Cornell and the Pinellas subgroups. Only one sequence type, belonging to the Pinellas subgroup, was detected in a Bitterfeld-Wolfen region aquifer containing chlorinated ethenes as the main contaminants. The t

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11

Nikolausz, Marcell, Antonis Chatzinotas, András Táncsics, Gwenaël Imfeld, and Matthias Kästner. "The single-nucleotide primer extension (SNuPE) method for the multiplex detection of various DNA sequences: from detection of point mutations to microbial ecology." Biochemical Society Transactions 37, no. 2 (2009): 454–59. http://dx.doi.org/10.1042/bst0370454.

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Methods based on SNuPE (single-nucleotide primer extension) have become invaluable tools for the rapid and highly specific detection of point mutations and single-nucleotide polymorphisms in the field of human genetics. In the primer extension reaction, a DNA polymerase is used to label a specific primer hybridized to the target sequence by incorporating a single labelled ddNTP (dideoxynucleotide). This labelling provides not only information about the complementary nucleotide of interest in the opposite strand but also a semiquantitative analysis of the sequence targeted by the primer. Since

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12

Arzamazova, Olga Alexandrovna, and Rif Shakrislamovich Nasibullin. "THE NAMES FOR SNIPE BIRD (GALLINAGO GALLINAGO) IN UDMURT DIALECTS." Yearbook of Finno-Ugric Studies 15, no. 4 (2021): 564–75. http://dx.doi.org/10.35634/2224-9443-2021-15-4-564-575.

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The article discusses the Udmurt dialect names of the snipe bird (Gallinago gallinago), which is from the snipe family of the Charadriiformes order. The main sources are field dialect materials of the Laboratory of Linguistic Mapping and Historical Lexicology of Udmurt State University, collected within the project “Dialectological Atlas of the Udmurt language”. In this paper methods of linguo-geographical description, structural-semantic and etymological analysis of words are used. Udmurt names for snipe appeared during the period of independent development of the language. In the Udmurt dial

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13

Miskelly, Colin M., and Allan J. Baker. "Description of a new subspecies of Coenocorypha snipe from subantarctic Campbell Island, New Zealand." Notornis 56, no. 3 (2010): 113. https://doi.org/10.63172/883299mqhyhb.

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A new subspecies of Coenocorypha snipe from Campbell I is described and named. This bird was discovered on rat-free 19 ha Jacquemart I in 1997, and had probably been confined there as a breeding species for about 170 years. Norway rats (Rattus norvegicus) were eradicated from 11,268 ha Campbell I in 2001, and snipe soon began to recolonise the main island from Jacquemart I 1 km offshore. Twelve adults and 5 chicks were caught on Campbell I in Jan 2006, and 1 nest was found. Genetic analysis of blood samples, and measurements and plumage descriptions from these birds revealed that they were bes

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14

Nguyen, TuDung T., Ann F. Mohrbacher, Yvonne C. Tsai, et al. "Quantitative measure of c-abl andp15 methylation in chronic myelogenous leukemia: biological implications." Blood 95, no. 9 (2000): 2990–92. http://dx.doi.org/10.1182/blood.v95.9.2990.009k08_2990_2992.

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We used a sensitive, quantitative bisulfite PCR assay, methylation sensitive single nucleotide primer extension (Ms-SNuPE), to measure methylation of the 5′ CpG islands of c-abl andp15 in chronic myelogenous leukemia (CML) patients during progression. We found that the Pa promoter of c-abl was methylated in 81% (17/21) of the white blood cells (WBCs) of CML patients, which correlates with previous reports. In contrast, WBCs from healthy donors, acute myelogenous leukemias, acute lymphocytic leukemias, and myelodysplastic syndromes were unmethylated at thec-abl Pa promoter locus. We also observ

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15

Jang, Jong-Hun, Gyu-Il Lee, and Jae-Young Park. "Analysis of daily physical activity of male and female middle school students according to periods." Korean Journal of Sport Science 31, no. 3 (2020): 581–92. http://dx.doi.org/10.24985/kjss.2020.31.3.581.

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Purpose The purpose of this study is to measure the daily physical activity of male and female middle school students according to the period (VD: vaction day, SNPE: school day no PE, SPE: school day with PE) by using 3-axis accelerometer, and to compare the characteristics of adolescent physical activity according to gender and period. Methods The subjects were 130 middle school students (68 male, 62 female students). Data collection was performed using a 3-axis accelerometer(GT3X model, ActiGraph). Collected data were converted into time by intensity and rate using physical activity analysis

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16

Yoon, Jiyoo, Jungki Choi, and Myoungjin Shin. "Self-natural posture exercise and chronic pain reduction." Social Behavior and Personality: an international journal 47, no. 11 (2019): 1–11. http://dx.doi.org/10.2224/sbp.8273.

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We examined the effects of the self-natural posture exercise (SNPE) program on changes in physical self-concept and perception of pain reduction among 114 individuals with chronic pain, sampled from a larger group of individuals who completed the SNPE program. Participants' physical self-concept and perception of their level of pain were measured 4 times (baseline and at 4, 8, and 12 weeks during the SNPE program). The effects of the SNPE on changes in these 2 variables were examined using latent curve model analysis. The program improved the muscle power, subjective health, and flexibility su

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17

Cho, Dong-Hyun, Hongrae Kim, and Hae-Dong Kim. "Visibility Analysis of Iridium Communication for SNIPE Nano-Satellite." Journal of the Korean Society for Aeronautical & Space Sciences 50, no. 2 (2022): 127–35. http://dx.doi.org/10.5139/jksas.2022.50.2.127.

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18

Włodarczyk, Radosław, Tomasz Janiszewski, Krzysztof Kaczmarek, Piotr Minias, and Anna Kleszcz. "Sexing Common Snipe (Gallinago gallinago) in the Field - is there any Simple Method?" Ring 28, no. 1 (2006): 45–50. http://dx.doi.org/10.2478/v10050-008-0031-0.

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Sexing Common Snipe (Gallinago gallinago) in the Field - is there any Simple Method? There are a few methods used for sex determination in the Common Snipe. However, all proposed methods are based on data obtained from dead birds. The most important feature is the total length of the outermost tail feather. The performed analysis showed that the vane length was strongly correlated with the total length of this feather. It allowed to predict this measurement having only the vane length. Because the measurement procedure influences the vane length, new ranges of vane length typical for each sex

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19

Hartika, Resti. "Analysis of social factors of the harry potter bullied In harry potter and the sorcere's stone Joanne kathleen rowling’s." Jurnal Ilmiah Langue and Parole 1, no. 1 (2017): 205–16. http://dx.doi.org/10.36057/jilp.v1i1.22.

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This research aims to analyze to illustrate the kind of bully action that do Dursleys, Draco Malfoy and Professor Severus Snape in Harry Potter. To describe the factors that trigger the Dursleys, Draco Malfoy and Professor Severus Snape take action against bully Harry Potter. To illustrate the social impact of the bully acts committed by the Dursleys, Draco Malfoy and Professor Severus Snape in Harry Potter in Harry Potter and the Sorcerer's Stone Joanne Kathleen Rowling. The method of the research is descriptive qualitative, which tries to explain about the correlations between author l

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20

Gonzalgo, Mark L., and Peter A. Jones. "Quantitative methylation analysis using methylation-sensitive single-nucleotide primer extension (Ms-SNuPE)." Methods 27, no. 2 (2002): 128–33. http://dx.doi.org/10.1016/s1046-2023(02)00064-6.

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21

Thorkildsen, Lill Therese, Felix Chinweije Nwosu, Ekaterina Avershina, et al. "Dominant Fecal Microbiota in Newly Diagnosed Untreated Inflammatory Bowel Disease Patients." Gastroenterology Research and Practice 2013 (2013): 1–13. http://dx.doi.org/10.1155/2013/636785.

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Our knowledge about the microbiota associated with the onset of IBD is limited. The aim of our study was to investigate the correlation between IBD and the fecal microbiota for early diagnosed untreated patients. The fecal samples used were a part of the Inflammatory Bowel South-Eastern Norway II (IBSEN II) study and were collected from CD patients (n=30), UC patients (n=33), unclassified IBD (IBDU) patients (n=3), and from a control group (n=34). The bacteria associated with the fecal samples were analyzed using a direct 16S rRNA gene-sequencing approach combined with a multivariate curve res

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22

R., R., and K. Selvakumar. "Efficient Sink Node Position Estimation using Harris Hawks Optimization Algorithm in Wireless Sensor Networks." Fusion: Practice and Applications 16, no. 1 (2024): 233–43. http://dx.doi.org/10.54216/fpa.160116.

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Wireless sensor network (WSN) was utilized widely in numerous areas owing to their accessibility in data collection, processing, and transmission, and the strength and reliability of data processing and transmission are based on the accuracy of the positions of sensor nodes (SNs) in the WSN. Sink node location estimation in WSN is a vital task intended to define the geographical position of the sink node in the network area of coverage. This procedure normally includes using numerous localization techniques that trust data like received signal strength, arrival time, time variance of arrival,

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23

McCloskey, Jon T., and Jonathan E. Thompson. "Aging and Sexing Common Snipe Using Discriminant Analysis." Journal of Wildlife Management 64, no. 4 (2000): 960. http://dx.doi.org/10.2307/3803205.

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24

Wu, Zhixiang, Junfeng Luo, Qinyu Ge, and Zuhong Lu. "Microarray-based Ms-SNuPE: Near-quantitative analysis for a high-throughput DNA methylation." Biosensors and Bioelectronics 23, no. 9 (2008): 1333–39. http://dx.doi.org/10.1016/j.bios.2007.11.018.

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25

Renkonen, Elise T., Pekka Nieminen, Wael M. Abdel-Rahman, et al. "Adenomatous Polyposis Families That Screen APC Mutation–Negative by Conventional Methods Are Genetically Heterogeneous." Journal of Clinical Oncology 23, no. 24 (2005): 5651–59. http://dx.doi.org/10.1200/jco.2005.14.712.

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Purpose One third of families with classical adenomatous polyposis (FAP), and a majority of those with attenuated FAP (AFAP), remain APC mutation–negative by conventional methods. Our purpose was to clarify the genetic basis of polyposis and genotype-phenotype correlations in such families. Patients and Methods We studied a cohort of 29 adenomatous polyposis families that had screened APC mutation–negative by the protein truncation test, heteroduplex analysis, and exon-specific sequencing. The APC gene was investigated for large genomic rearrangements by multiplex ligation-dependent probe ampl

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26

Hansen, Birgita D., Jodie Honan, Don Stewart, Judi R. Walters, and Michael A. Weston. "Estimating setback distances for a threatened, cryptic, data-sparse migratory shorebird." PLOS One 20, no. 4 (2025): e0317081. https://doi.org/10.1371/journal.pone.0317081.

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Cryptic fauna species using highly modified habitats face many conservation challenges, with disturbance from human use being an ongoing issue across many global settings. Setbacks or buffers are a key planning tool for protecting habitat, and are often specified under law. However, for many species using modified and urban habitats there are no published data on how wide setbacks should be. Latham’s Snipe (Gallinago hardwickii) is a case in point. It is a threatened, cryptic, migratory shorebird that breeds in Japan and spends its non-breeding season almost entirely in Australian wetlands and

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27

B, Ahmad Waheed, Kamran Jafar B, Muhammad Saleem Khan, et al. "Revision of common snipe, Gallinago gallinago in morphometric analysis and building the standard reference haematological values for further studies." Turkish Journal of Zoology 45 (July 1, 2021): 499–504. https://doi.org/10.3906/zoo-2011-33.

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B, Ahmad Waheed, B, Kamran Jafar, Khan, Muhammad Saleem, B, Muhammad Wajid, B, Shamoon Ali, B, Muhammad Waseem Aslam, B, Shabbir Ahmad (2021): Revision of common snipe, Gallinago gallinago in morphometric analysis and building the standard reference haematological values for further studies. Turkish Journal of Zoology 45: 499-504, DOI: 10.3906/zoo-2011-33, URL: http://dx.doi.org/10.5281/zenodo.13202728

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28

Lebon, Jeanne M., Patrick P. L. Tam, Judith Singer-Sam, Arthur D. Riggs, and Seong-Seng Tan. "Mouse endogenous X-linked genes do not show lineage-specific delayed inactivation during development." Genetical Research 65, no. 3 (1995): 223–27. http://dx.doi.org/10.1017/s0016672300033292.

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SummaryX chromosome inactivation (XCI) has been assumed to be complete in all cells of female mouse embryos at about 6 d post coitum (dpc). However, a recent study on β-galactosidase expression of an X-linkedlacZtransgene suggests that XCI is probably not complete several days after this time in some lineages. To help resolve this issue, we analysed XCI in embryos which carry the T(X;16)16H (Searle's) translocation and are heterozygous at the X-linkedHprtandPgk-1genes. The quantitative RT-PCR single nucleotide primer extension (SNuPE) assay was used to measureHprtandPgk-1allele-specific transc

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29

Papaleo, M. C., E. Perrin, I. Maida, B. Tarabella, M. Fondi, and R. Fani. "Identification of Burkholderia cepacia complex species by SNuPE and LAMP analysis of histidine biosynthetic genes." Journal of Cystic Fibrosis 7 (June 2008): S41. http://dx.doi.org/10.1016/s1569-1993(08)60155-1.

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30

Paulauskas, Algimantas, Saulius Švažas, and Asta Danilevičiūtė. "Multilocus Allozyme Analysis of Common Snipe (Gallinago Gallinago) in Lithuania." Acta Zoologica Lituanica 12, no. 3 (2002): 318–32. http://dx.doi.org/10.1080/13921657.2002.10512519.

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31

Zhao, Jiangli, Qingyuan Sun, Xuchen Liu, et al. "Integrative Role of RNA N7-methylguanosine in epilepsy: Regulation of neuronal oxidative phosphorylation, programmed death and immune microenvironment." PLOS One 20, no. 7 (2025): e0327256. https://doi.org/10.1371/journal.pone.0327256.

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Epilepsy is a common brain disease that causes different types of seizures, with an incidence rate of nearly 1%. N7-methylguanosine (m7G) is a prevalent RNA modification that has attracted significant attention in recent research. In this study, we investigated the regulatory pattern and clinical significance of m7G methylation in epilepsy. Gene expression analysis of datasets GSE143272 and GSE190452 identified 8 differentially expressed m7G regulators (NUDT3, EIF4E3, LARP1, IFIT5, SNUPN, METTL1, EIF4A1, and LSM1) in epilepsy. Through consensus clustering, epilepsy patients were divided into t

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32

Song, Hosub, Jaejin Lee, and Yu Yi. "Feasibility Study of Communication Access via Iridium Constellation for Small-Scale Magnetospheric Ionospheric Plasma Experiment Mission." Journal of Astronomy and Space Sciences 39, no. 3 (2022): 109–16. http://dx.doi.org/10.5140/jass.2022.39.3.109.

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The small-scale magnetospheric and ionospheric plasma experiment (SNIPE) is a mission initiated by the Korea Astronomy and Space Science Institute (KASI) in 2017 and comprises four 6U-sized nano-satellites (Korea Astronomy and Space Science Institute Satellite-1, KASISat-1) flying in formations. The main goal of the SNIPE mission is to investigate the space environment in low Earth orbit at 500-km. Because Iridium & GPS Board (IGB) is installed on the KASISat-1, a communication simulation is required to analyze the contact number and the duration. In this study, communication simulations b

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KÖLZSCH, ANDREA, STEIN ARE SÆTHER, HENRIK GUSTAFSSON, PEDER FISKE, JACOB HÖGLUND, and JOHN ATLE KÅLÅS. "Population fluctuations and regulation in great snipe: a time-series analysis." Journal of Animal Ecology 76, no. 4 (2007): 740–49. http://dx.doi.org/10.1111/j.1365-2656.2007.01246.x.

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Worthy, Trevor H., Colin M. Miskelly, and Bob (R ). A. Ching. "Taxonomy of North and South Island snipe (Aves: Scolopacidae:Coenocorypha), with analysis of a remarkable collection of snipe bones from Greymouth, New Zealand." New Zealand Journal of Zoology 29, no. 3 (2002): 231–44. http://dx.doi.org/10.1080/03014223.2002.9518307.

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WATSON, DEBBIE, ANITA S. JACOMBS, DAVID A. LOEBEL, EDWARD S. ROBINSON, and PETER G. JOHNSTON. "Single Nucleotide Primer Extension (SNuPE) analysis of the G6PD gene in somatic cells and oocytes of a kangaroo (Macropus robustus)." Genetical Research 75, no. 3 (2000): 269–74. http://dx.doi.org/10.1017/s0016672300004523.

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cDNA sequence analysis of the X-linked glucose-6-phosphate dehydrogenase (G6PD) gene has shown a base difference between two subspecies of the kangaroo, Macropus robustus robustus (wallaroo) and M. r. erubescens (euro). A thymine residue in the wallaroo at position 358 in exon 5 has been replaced by a cytosine residue in the euro, which accounts for the previously reported electrophoretic difference between the two subspecies. This base difference allowed use of the Single Nucleotide Primer Extension (SNuPE) technique to study allele-specific expression of G6PD at the transcriptional level. We

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Wagner-Carena, Sebastian, Jaehoon Lee, Jeffrey Pennington, Jelle Aalbers, Simon Birrer, and Risa H. Wechsler. "A Strong Gravitational Lens Is Worth a Thousand Dark Matter Halos: Inference on Small-scale Structure Using Sequential Methods." Astrophysical Journal 975, no. 2 (2024): 297. http://dx.doi.org/10.3847/1538-4357/ad6e70.

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Abstract Strong gravitational lenses are a singular probe of the Universe’s small-scale structure—they are sensitive to the gravitational effects of low-mass (<1010 M ⊙) halos even without a luminous counterpart. Recent strong-lensing analyses of dark matter structure rely on simulation-based inference (SBI). Modern SBI methods, which leverage neural networks as density estimators, have shown promise in extracting the halo-population signal. However, it is unclear whether the constraints from these models are limited by the methodology or the data. In this study, we introduce an accelerator

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El-Maarri, O. "A rapid, quantitative, non-radioactive bisulfite-SNuPE- IP RP HPLC assay for methylation analysis at specific CpG sites." Nucleic Acids Research 30, no. 6 (2002): 25e—25. http://dx.doi.org/10.1093/nar/30.6.e25.

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Zarubin, Boris E., Vyacheslav V. Kolesnikov, Anna V. Kozlova, Maria S. Shevnina, and Alexander V. Economov. "Species structure of small game hunting in the Kirov region at the beginning of the XXI century." Agricultural Science Euro-North-East 22, no. 4 (2021): 597–607. http://dx.doi.org/10.30766/2072-9081.2021.22.4.597-607.

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An assessment of the species structure and size of small game prey for the spring and autumn-winter hunting seasons on the territory of the Kirov region was made, using a questionnaire survey based on the analysis of the prey of 3220 individuals. Small game includes such species (groups of species) as mallard, Northern shoveler, pintail, teal-whistle, teal cracker (Garganey), Eurasian wigeon, diving ducks, white-fronted goose, bean goose, wood grouse, black grouse, hazel grouse, woodcock, double snipe, snipe, corncrake, wood pigeon, turtle doves, white hare, European hare. The average index of

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Noh, Su-Yeon, Ji-Hye Kyeong, and Myoung-Jin Shin. "Verification of The Effect of SNPE Danason Use on Headache Reduction in Office Workers: Qualitative and Quantitative Analysis." Journal of Korean Association of Physical Education and Sport for Girls and Women 35, no. 1 (2021): 33–52. http://dx.doi.org/10.16915/jkapesgw.2021.3.35.1.33.

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Shydlovskyy, I. V., and Y. V. Tsaryk. "Changes in species composition of waders in western Ukraine during the historical period of zoological research." Studia Biologica 15, no. 3 (2021): 73–88. http://dx.doi.org/10.30970/sbi.1503.664.

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Introduction. Information on historical changes in the fauna of geographical regions and biota habitats is important for understanding the processes that take place in ecosystems. The results of such an analysis in combination with modern research can indicate not only the global trends in changes of animal associations and the status of particular populations of species, but also reveal the reasons that caused the situation. Materials and discussion. The first lists of bird species in the 18th – early 19th centuries showed the nesting of 12 species of waders. However, during the 19th century

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GONZALEZ, RAUL, KEVIN HASKER, and ROBIN C. SICKLES. "AN ANALYSIS OF STRATEGIC BEHAVIOR IN eBAY AUCTIONS." Singapore Economic Review 54, no. 03 (2009): 441–72. http://dx.doi.org/10.1142/s0217590809003422.

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A relatively new type of panel data analysis is becoming more and more topical in the applied econometrics literature as auction mechanisms are being explored in more depth. The typical data utilized in such studies involves repeated measures of auction outcomes, where the variable of interest involves order statistics from the sample of bids from many bids on completed auctions for a particular commodity. This article presents structural estimates of bidding behavior in eBay computer monitor auctions. We exploit characteristics of such repeated measures to analyze the efficiency of private va

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Rezaei Tavirani, Mostafa, Fatemeh Bandarian, Farideh Razi, Zahra Razzaghi, Babak Arjmand, and Mohammad Rostami Nejad. "Assessment of NB-UVB Effects on Skin of Atopic Dermatitis Patients: A Network Analysis." Journal of Lasers in Medical Sciences 15 (July 30, 2024): e27. http://dx.doi.org/10.34172/jlms.2024.27.

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Introduction: Atopic dermatitis is a common inflammatory skin disease which is treated with narrowband ultraviolet B (NB-UVB). Exploring the critical targeted genes in patients by UV radiation is the main aim of this study. Methods: Gene expression profiles of lesional and non-lesional skin samples of atopic dermatitis patients after treatment with NB-UVB and the non-irradiated samples were extracted from the Gene Expression Omnibus (GEO) database and analyzed via protein-protein interaction (PPI) network analysis to find the critical targeted genes. Results: A total of 357 significant differe

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Bovo, Samuele, Francesca Bertolini, Giuseppina Schiavo, Gianluca Mazzoni, Stefania Dall’Olio, and Luca Fontanesi. "Reduced Representation Libraries from DNA Pools Analysed with Next Generation Semiconductor Based-Sequencing to Identify SNPs in Extreme and Divergent Pigs for Back Fat Thickness." International Journal of Genomics 2015 (2015): 1–8. http://dx.doi.org/10.1155/2015/950737.

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The aim of this study was to identify single nucleotide polymorphisms (SNPs) that could be associated with back fat thickness (BFT) in pigs. To achieve this goal, we evaluated the potential and limits of an experimental design that combined several methodologies. DNA samples from two groups of Italian Large White pigs with divergent estimating breeding value (EBV) for BFT were separately pooled and sequenced, after preparation of reduced representation libraries (RRLs), on the Ion Torrent technology. Taking advantage from SNAPE for SNPs calling in sequenced DNA pools, 39,165 SNPs were identifi

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Snipe, Arta. "Tiesisks darījums un tā noslēgšanas brīdis zemes likumiskās (piespiedu) nomas tiesisko attiecību gadījumā." SOCRATES. Rīgas Stradiņa universitātes Juridiskās fakultātes elektroniskais juridisko zinātnisko rakstu žurnāls / SOCRATES. Rīga Stradiņš University Faculty of Law Electronic Scientific Journal of Law 3, no. 12 (2018): 61–75. http://dx.doi.org/10.25143/socr.12.2018.3.61-75.

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Arta Snipe savā rakstā analizē tiesiskos darījumus un to noslēgšanas praksi zemes likumiskās (piespiedu) nomas tiesisko attiecību gadījumā. Problēmjautājumi veidojas tādēļ, ka, pieņemot lēmumu zemes un ēkas īpašnieku savstarpējās tiesiskās attiecības regulēt atbilstoši nomas līguma noteikumiem, likumdevējs radīja pamatu t. s. dalīto īpašumu pastāvēšanai. Šo piespiedu nomas tiesisko attiecību nodibināšanas pamats ir likums – normas, kas iekļautas likumā “Par zemes reformu Latvijas Republikas pilsētās” un likumā “Par valsts un pašvaldību dzīvojamo māju privatizāciju”. Autore, interpretējot spēkā

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Whittingham, Linda A., Frederick H. Sheldon, and Stephen T. Emlen. "Molecular Phylogeny of Jacanas and its Implications for Morphologic and Biogeographic Evolution." Auk 117, no. 1 (2000): 22–32. http://dx.doi.org/10.1093/auk/117.1.22.

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Abstract We compared sequences of mitochondrial cytochrome-b and ND5 genes in a phylogenetic analysis of seven species of jacanas, representing all six genera and including the Greater Painted-snipe (Rostratula benghalensis) as an outgroup. When analyzed separately by parsimony and maximum-likelihood bootstrapping, the two genes produced consistent trees, although the ND5 tree was better resolved than the cytochrome-b tree. When combined, the data from the two genes produced a fully resolved tree that was identical to the ND5 tree. This tree had the following form: ((((Irediparra, Microparra),

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Bakheet, Tala, Nada Al-Mutairi, Mosaab Doubi, Wijdan Al-Ahmadi, Khaled Alhosaini, and Fahad Al-Zoghaibi. "A Computational Recognition Analysis of Promising Prognostic Biomarkers in Breast, Colon and Lung Cancer Patients." International Journal of Molecular Sciences 26, no. 3 (2025): 1017. https://doi.org/10.3390/ijms26031017.

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Breast, colon, and lung carcinomas are classified as aggressive tumors with poor relapse-free survival (RFS), progression-free survival (PF), and poor hazard ratios (HRs) despite extensive therapy. Therefore, it is essential to identify a gene expression signature that correlates with RFS/PF and HR status in order to predict treatment efficiency. RNA-binding proteins (RBPs) play critical roles in RNA metabolism, including RNA transcription, maturation, and post-translational regulation. However, their involvement in cancer is not yet fully understood. In this study, we used computational bioin

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Naik, Surabhi, and Akram Mohammed. "Consensus Gene Network Analysis Identifies the Key Similarities and Differences in Endothelial and Epithelial Cell Dynamics after Candida albicans Infection." International Journal of Molecular Sciences 24, no. 14 (2023): 11748. http://dx.doi.org/10.3390/ijms241411748.

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Endothelial and epithelial cells are morphologically different and play a critical role in host defense during Candida albicans infection. Both cells respond to C. albicans infection by activating various signaling pathways and gene expression patterns. Their interactions with these pathogens can have beneficial and detrimental effects, and a better understanding of these interactions can help guide the development of new therapies for C. albicans infection. To identify the differences and similarities between human endothelial and oral epithelial cell transcriptomics during C. albicans infect

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Marton, Matthew John, Ken Chang, Stefan Galuska, Ahmed Samatar, Ling Zhang, and Russell Weiner. "Patient segmentation assay for MAPK pathway mutations." Journal of Clinical Oncology 31, no. 15_suppl (2013): 11059. http://dx.doi.org/10.1200/jco.2013.31.15_suppl.11059.

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11059 Background: Mutational status of solid tumors is increasingly important for identifying the best treatment options. Tumors harboring activating mutations in RAS and RAF result in constitutive activation of the RAS/MAPK signal transduction pathway and do not respond well to MAPK pathway inhibitors. Scientific attention is mostly focused on the major mutational hotspots in these genes (e.g., KRAS codons 12, 13 and 61, BRAF codon 600). However, there is increasing evidence that other mutations can be tumorigenic. Thus, there is a need for highly sensitive and specific assays to detect these

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Ye, Qing, Salvi Singh, Peter R. Qian, and Nancy Lan Guo. "Immune-Omics Networks of CD27, PD1, and PDL1 in Non-Small Cell Lung Cancer." Cancers 13, no. 17 (2021): 4296. http://dx.doi.org/10.3390/cancers13174296.

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To date, there are no prognostic/predictive biomarkers to select chemotherapy, immunotherapy, and radiotherapy in individual non-small cell lung cancer (NSCLC) patients. Major immune-checkpoint inhibitors (ICIs) have more DNA copy number variations (CNV) than mutations in The Cancer Genome Atlas (TCGA) NSCLC tumors. Nevertheless, CNV-mediated dysregulated gene expression in NSCLC is not well understood. Integrated CNV and transcriptional profiles in NSCLC tumors (n = 371) were analyzed using Boolean implication networks for the identification of a multi-omics CD27, PD1, and PDL1 network, conta

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Hao, Liang, Xiliang Shang, Yang Wu, Jun Chen, and Shiyi Chen. "Construction of a Diagnostic m7G Regulator-Mediated Scoring Model for Identifying the Characteristics and Immune Landscapes of Osteoarthritis." Biomolecules 13, no. 3 (2023): 539. http://dx.doi.org/10.3390/biom13030539.

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With the increasingly serious burden of osteoarthritis (OA) on modern society, it is urgent to propose novel diagnostic biomarkers and differentiation models for OA. 7-methylguanosine (m7G), as one of the most common base modification forms in post transcriptional regulation, through which the seventh position N of guanine (G) of messenger RNA is modified by methyl under the action of methyltransferase; it has been found that it plays a crucial role in different diseases. Therefore, we explored the relationship between OA and m7G. Based on the expression level of 18 m7G-related regulators, we

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