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Статті в журналах з теми "Vertebrate DNA"

Автор: Grafiati

Опубліковано: 10 грудня 2022

Оновлено: 31 липня 2025

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1

Ahmad, Hafiz Ishfaq, Gulnaz Afzal, Sehrish Sadia, et al. "Structural and Evolutionary Adaptations of Nei-Like DNA Glycosylases Proteins Involved in Base Excision Repair of Oxidative DNA Damage in Vertebrates." Oxidative Medicine and Cellular Longevity 2022 (April 4, 2022): 1–20. http://dx.doi.org/10.1155/2022/1144387.

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Oxidative stress is a type of stress that damages DNA and can occur from both endogenous and exogenous sources. Damage to DNA caused by oxidative stress can result in base modifications that promote replication errors and the formation of sites of base loss, which pose unique challenges to the preservation of genomic integrity. However, the adaptive evolution of the DNA repair mechanism is poorly understood in vertebrates. This research aimed to explore the evolutionary relationships, physicochemical characteristics, and comparative genomic analysis of the Nei-like glycosylase gene family invo

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2

Ortega-Recalde, Oscar, and Timothy Alexander Hore. "DNA methylation in the vertebrate germline: balancing memory and erasure." Essays in Biochemistry 63, no. 6 (2019): 649–61. http://dx.doi.org/10.1042/ebc20190038.

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Abstract Cytosine methylation is a DNA modification that is critical for vertebrate development and provides a plastic yet stable information module in addition to the DNA code. DNA methylation memory establishment, maintenance and erasure is carefully balanced by molecular machinery highly conserved among vertebrates. In mammals, extensive erasure of epigenetic marks, including 5-methylcytosine (5mC), is a hallmark of early embryo and germline development. Conversely, global cytosine methylation patterns are preserved in at least some non-mammalian vertebrates over comparable developmental wi

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3

Carvalho, C. B. V. "DNA Barcoding in Forensic Vertebrate Species Identification." Brazilian Journal of Forensic Sciences, Medical Law and Bioethics 4, no. 1 (2014): 12–23. http://dx.doi.org/10.17063/bjfs4(1)y201412.

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4

Varriale, Annalisa. "DNA Methylation, Epigenetics, and Evolution in Vertebrates: Facts and Challenges." International Journal of Evolutionary Biology 2014 (January 16, 2014): 1–7. http://dx.doi.org/10.1155/2014/475981.

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DNA methylation is a key epigenetic modification in the vertebrate genomes known to be involved in biological processes such as regulation of gene expression, DNA structure and control of transposable elements. Despite increasing knowledge about DNA methylation, we still lack a complete understanding of its specific functions and correlation with environment and gene expression in diverse organisms. To understand how global DNA methylation levels changed under environmental influence during vertebrate evolution, we analyzed its distribution pattern along the whole genome in mammals, reptiles a

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5

Ross, Samuel E., Allegra Angeloni, Fan-Suo Geng, Alex de Mendoza, and Ozren Bogdanovic. "Developmental remodelling of non-CG methylation at satellite DNA repeats." Nucleic Acids Research 48, no. 22 (2020): 12675–88. http://dx.doi.org/10.1093/nar/gkaa1135.

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Abstract In vertebrates, DNA methylation predominantly occurs at CG dinucleotides however, widespread non-CG methylation (mCH) has been reported in mammalian embryonic stem cells and in the brain. In mammals, mCH is found at CAC trinucleotides in the nervous system, where it is associated with transcriptional repression, and at CAG trinucleotides in embryonic stem cells, where it positively correlates with transcription. Moreover, CAC methylation appears to be a conserved feature of adult vertebrate brains. Unlike any of those methylation signatures, here we describe a novel form of mCH that o

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6

Galkina, Svetlana, Irina Demina, Elena Platonova, and Alexander Dyomin. "Aquatic environmental DNA: Applications for assessment and monitoring vertebrate." Biological Communications 69, no. 4 (2025): 263–79. https://doi.org/10.21638/spbu03.2024.407.

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Environmental DNA from water samples (aquatic eDNA) is a noninvasive, cost-effective and high-throughput tool to conduct biodiversity assessment of both hydrobionts and terrestrial organisms that live nearby or frequently come into contact with a waterbody. Due to the exceptional importance of vertebrates in biomonitoring, a wide range of vertebrate taxonomic groups have been studied in recent years in various ecosystems using aquatic eDNA assays, including endangered, rare, secretive and elusive species that are often missed by traditional survey methods. Given that the potential uses of eDNA

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7

Egeter, Bastian, Sara Peixoto, José C. Brito, Simon Jarman, Pamela Puppo, and Guillermo Velo-Antón. "Challenges for assessing vertebrate diversity in turbid Saharan water-bodies using environmental DNA." Genome 61, no. 11 (2018): 807–14. http://dx.doi.org/10.1139/gen-2018-0071.

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The Sahara desert is the largest warm desert in the world and a poorly explored area. Small water-bodies occur across the desert and are crucial habitats for vertebrate biodiversity. Environmental DNA (eDNA) is a powerful tool for species detection and is being increasingly used to conduct biodiversity assessments. However, there are a number of difficulties with sampling eDNA from such turbid water-bodies and it is often not feasible to rely on electrical tools in remote desert environments. We trialled a manually powered filtering method in Mauritania, using pre-filtration to circumvent prob

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8

Carone, A., S. B. Malladi, M. Attimonelli, and C. Saccone. "Vertebrate MitBASE: a specialised database on vertebrate mitochondrial DNA sequences." Nucleic Acids Research 27, no. 1 (1999): 150–52. http://dx.doi.org/10.1093/nar/27.1.150.

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9

Tweedie, S., J. Charlton, V. Clark, and A. Bird. "Methylation of genomes and genes at the invertebrate-vertebrate boundary." Molecular and Cellular Biology 17, no. 3 (1997): 1469–75. http://dx.doi.org/10.1128/mcb.17.3.1469.

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Patterns of DNA methylation in animal genomes are known to vary from an apparent absence of modified bases, via methylation of a minor fraction of the genome, to genome-wide methylation. Representative genomes from 10 invertebrate phyla comprise predominantly nonmethylated DNA and (usually but not always) a minor fraction of methylated DNA. In contrast, all 27 vertebrate genomes that have been examined display genome-wide methylation. Our studies of chordate genomes suggest that the transition from fractional to global methylation occurred close to the origin of vertebrates, as amphioxus has a

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10

Woo, Cheolwoon, Priyanka Kumari, Kyung Yeon Eo, Woo-Shin Lee, Junpei Kimura, and Naomichi Yamamoto. "Combining vertebrate mitochondrial 12S rRNA gene sequencing and shotgun metagenomic sequencing to investigate the diet of the leopard cat (Prionailurus bengalensis) in Korea." PLOS ONE 18, no. 1 (2023): e0281245. http://dx.doi.org/10.1371/journal.pone.0281245.

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The leopard cat (Prionailurus bengalensis), an endangered species in South Korea, is a small feline widely distributed in Asia. Here, we investigated the diet of leopard cats in the inland areas of Korea by examining their fecal contents using vertebrate mitochondrial 12S rRNA gene sequencing and shotgun metagenomic sequencing. Shotgun metagenomic sequencing revealed that the feces were rich in DNA not only of vertebrates but also of arthropods and plants, but care should be taken when using shotgun metagenomic sequencing to identify vertebrates at low taxonomic levels (e.g., genus level), as

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11

Bernal, Juan A., and Ashok R. Venkitaraman. "A vertebrate N-end rule degron reveals that Orc6 is required in mitosis for daughter cell abscission." Journal of Cell Biology 192, no. 6 (2011): 969–78. http://dx.doi.org/10.1083/jcb.201008125.

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Orc6, an evolutionarily conserved component of the origin recognition complex, is essential for deoxyribonucleic acid (DNA) replication initiation from yeast to humans. Whether vertebrate Orc6 has a mitotic function remains unresolved. In vertebrates, but not yeast, its depletion causes centrosome amplification and multinucleate division, but replication stress indirectly causes similar abnormalities. In this paper, we exploit Varshavsky’s N-end rule to create a temperature-sensitive degron form of avian Orc6. Orc6 depletion during the S phase triggers centrosome amplification suppressed by G2

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12

GRANTHAM, RICHARD. "CG doublet difficulties in vertebrate DNA." Nature 313, no. 6002 (1985): 437. http://dx.doi.org/10.1038/313437a0.

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13

MAX, EDWARD E. "CG doublet difficulties in vertebrate DNA." Nature 313, no. 6002 (1985): 437–38. http://dx.doi.org/10.1038/313437b0.

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14

Sonoda, E., M. Takata, Y. M. Yamashita, C. Morrison, and S. Takeda. "Homologous DNA recombination in vertebrate cells." Proceedings of the National Academy of Sciences 98, no. 15 (2001): 8388–94. http://dx.doi.org/10.1073/pnas.111006398.

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15

Miskey, C., Z. Izsvák, K. Kawakami, and Z. Ivics. "DNA transposons in vertebrate functional genomics." Cellular and Molecular Life Sciences 62, no. 6 (2005): 629–41. http://dx.doi.org/10.1007/s00018-004-4232-7.

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16

Lynggaard, Christina, Sébastien Calvignac-Spencer, Colin A. Chapman, et al. "Vertebrate environmental DNA from leaf swabs." Current Biology 33, no. 16 (2023): R853—R854. http://dx.doi.org/10.1016/j.cub.2023.06.031.

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17

Huang, Ziwen, Zhenxi Cai, Xin Tao, et al. "Cross-species analysis of the nuclease Artemis highlights its evolving function in domesticating RAG-like transposons and residues that are crucial for activity." PLOS Biology 23, no. 4 (2025): e3003056. https://doi.org/10.1371/journal.pbio.3003056.

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The discovery of the ProtoRAG transposon in lancelets revealed that V(D)J recombination originates from the Recombination activating gene-like (RAGL) transposon. Analogous to the vertebrate RAG complex, the RAGL transposase nicks host flanking DNA and leads to the formation of hairpin ends. Here, we showed that the Artemis nuclease, which is capable of resolving DNA hairpin ends generated during V(D)J recombination, is also responsible for unraveling ProtoRAG-mediated DNA hairpin ends. Notably, like the RAGL transposon, Artemis originated from the eukaryotic common ancestor. By tracing the evo

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18

Macher, Till-Hendrik, Jens Arle, Arne J. Beermann, et al. "Is it worth the extra mile? Comparing environmental DNA and RNA metabarcoding for vertebrate and invertebrate biodiversity surveys in a lowland stream." PeerJ 12 (October 24, 2024): e18016. http://dx.doi.org/10.7717/peerj.18016.

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Environmental DNA (eDNA) metabarcoding has emerged as a promising approach to assess biodiversity and derive ecological status classes from water samples. However, a limitation of eDNA surveys is that detected DNA molecules may originate from other places or even dead organisms, distorting local biodiversity assessments. Environmental RNA (eRNA) metabarcoding has recently been proposed as a complementary tool for more localized assessments of the biological community. In this study, we evaluated the effectiveness of eDNA and eRNA metabarcoding for inferring the richness and species distributio

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19

Hopken, Matthew W., Limarie J. Reyes-Torres, Nicole Scavo, et al. "Temporal and Spatial Blood Feeding Patterns of Urban Mosquitoes in the San Juan Metropolitan Area, Puerto Rico." Insects 12, no. 2 (2021): 129. http://dx.doi.org/10.3390/insects12020129.

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Urban ecosystems are a patchwork of habitats that host a broad diversity of animal species. Insects comprise a large portion of urban biodiversity which includes many pest species, including those that transmit pathogens. Mosquitoes (Diptera: Culicidae) inhabit urban environments and rely on sympatric vertebrate species to complete their life cycles, and in this process transmit pathogens to animals and humans. Given that mosquitoes feed upon vertebrates, they can also act as efficient samplers that facilitate detection of vertebrate species that utilize urban ecosystems. In this study, we ana

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20

Drinkwater, Rosie, Joseph Williamson, Elizabeth L. Clare, Arthur Y. C. Chung, Stephen J. Rossiter, and Eleanor Slade. "Dung beetles as samplers of mammals in Malaysian Borneo—a test of high throughput metabarcoding of iDNA." PeerJ 9 (August 13, 2021): e11897. http://dx.doi.org/10.7717/peerj.11897.

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Invertebrate-derived DNA (iDNA) sampling in biodiversity surveys is becoming increasingly widespread, with most terrestrial studies relying on DNA derived from the gut contents of blood-feeding invertebrates, such as leeches and mosquitoes. Dung beetles (superfamily Scarabaeoidea) primarily feed on the faecal matter of terrestrial vertebrates and offer several potential benefits over blood-feeding invertebrates as samplers of vertebrate DNA. Importantly, these beetles can be easily captured in large numbers using simple, inexpensive baited traps, are globally distributed, and occur in a wide r

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21

Nelson, Joseph S. "The next 25 years: vertebrate systematics." Canadian Journal of Zoology 65, no. 4 (1987): 779–85. http://dx.doi.org/10.1139/z87-124.

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Systematics, defined here as the study of the evolutionary history of life, plays a vital role in biology. Together with studies of evolutionary mechanisms, it gives special meaning to biology; it is the unifying force in biology. As a result of recent developments in techniques useful to systematics and in philosophical approaches to systematics, it will be possible for vertebrate systematics to make major advances. Comparative morphological studies of extant and extinct species will play the dominant role in our understanding of the overall pattern of vertebrate phylogeny. For extant species

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22

Wang, Zhengyang, Caixia Wang, Yanpeng Zhai, Yan Bai, Hongying Wang, and Xiaozhi Rong. "Loss of Brcc3 in Zebrafish Embryos Increases Their Susceptibility to DNA Damage Stress." International Journal of Molecular Sciences 25, no. 22 (2024): 12108. http://dx.doi.org/10.3390/ijms252212108.

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DNA double-strand breaks (DSBs) represent one of the most severe forms of genetic damage in organisms, yet vertebrate models capable of monitoring DSBs in real-time remain scarce. BRCA1/BRCA2-containing complex subunit 3 (BRCC3), also known as BRCC36, functions within various multiprotein complexes to mediate diverse biological processes. However, the physiological role of BRCC3 in vertebrates, as well as the underlying mechanisms that govern its activity, are not well understood. To explore these questions, we generated brcc3-knockout zebrafish using CRISPR/Cas9 gene-editing technology. While

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23

ELMORE, TAMARA, ANTONY RODRIGUEZ, and DEAN P. SMITH. "dRGS7 Encodes a Drosophila Homolog of EGL-10 and Vertebrate RGS7." DNA and Cell Biology 17, no. 11 (1998): 983–89. http://dx.doi.org/10.1089/dna.1998.17.983.

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24

Clayton, David A. "Replication and Transcription of Vertebrate Mitochondrial DNA." Annual Review of Cell Biology 7, no. 1 (1991): 453–78. http://dx.doi.org/10.1146/annurev.cb.07.110191.002321.

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25

Fisher, D. "Vertebrate HoxB gene expression requires DNA replication." EMBO Journal 22, no. 14 (2003): 3737–48. http://dx.doi.org/10.1093/emboj/cdg352.

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26

Clayton, David A. "Vertebrate Mitochondrial DNA—A Circle of Surprises." Experimental Cell Research 255, no. 1 (2000): 4–9. http://dx.doi.org/10.1006/excr.1999.4763.

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27

Vinogradov, Alexander E. "Larger genomes for molluskan land pioneers." Genome 43, no. 1 (2000): 211–12. http://dx.doi.org/10.1139/g99-063.

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Анотація:

The terrestrial pulmonate mollusks were found to have the significantly larger genomes than the aquatic pulmonates. Being shown in the independent phylogenetic branch, this phenomenon suggests that the previously observed genome enlargement in the vertebrate land pioneers (amphibians and lungfishes) was not casual. As in the vertebrates, the larger molluskan genomes are also more GC-rich. Key words: genome size, genome evolution, cytoecology, noncoding DNA, genome base composition, flow cytometry.

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28

Stinson, Benjamin M., and Joseph J. Loparo. "Repair of DNA Double-Strand Breaks by the Nonhomologous End Joining Pathway." Annual Review of Biochemistry 90, no. 1 (2021): 137–64. http://dx.doi.org/10.1146/annurev-biochem-080320-110356.

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DNA double-strand breaks pose a serious threat to genome stability. In vertebrates, these breaks are predominantly repaired by nonhomologous end joining (NHEJ), which pairs DNA ends in a multiprotein synaptic complex to promote their direct ligation. NHEJ is a highly versatile pathway that uses an array of processing enzymes to modify damaged DNA ends and enable their ligation. The mechanisms of end synapsis and end processing have important implications for genome stability. Rapid and stable synapsis is necessary to limit chromosome translocations that result from the mispairing of DNA ends.

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29

Chen, Xin-Xin, Wei-Chen Wu, and Mang Shi. "Discovery and Characterization of Actively Replicating DNA and Retro-Transcribing Viruses in Lower Vertebrate Hosts Based on RNA Sequencing." Viruses 13, no. 6 (2021): 1042. http://dx.doi.org/10.3390/v13061042.

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In a previous study, a metatranscriptomics survey of RNA viruses in several important lower vertebrate host groups revealed huge viral diversity, transforming the understanding of the evolution of vertebrate-associated RNA virus groups. However, the diversity of the DNA and retro-transcribing viruses in these host groups was left uncharacterized. Given that RNA sequencing is capable of revealing viruses undergoing active transcription and replication, we collected previously generated datasets associated with lower vertebrate hosts, and searched them for DNA and retro-transcribing viruses. Our

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30

DIGBY, MATTHEW R., WAYNE G. KIMPTON, JENNIFER J. YORK, TERRI E. CONNICK, and JOHN W. LOWENTHAL. "ITA, a Vertebrate Homologue of IAP That Is Expressed in T Lymphocytes." DNA and Cell Biology 15, no. 11 (1996): 981–88. http://dx.doi.org/10.1089/dna.1996.15.981.

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31

Myler, Logan R., Charles G. Kinzig, Nanda K. Sasi, George Zakusilo, Sarah W. Cai, and Titia de Lange. "The evolution of metazoan shelterin." Genes & Development 35, no. 23-24 (2021): 1625–41. http://dx.doi.org/10.1101/gad.348835.121.

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The mammalian telomeric shelterin complex—comprised of TRF1, TRF2, Rap1, TIN2, TPP1, and POT1—blocks the DNA damage response at chromosome ends and interacts with telomerase and the CST complex to regulate telomere length. The evolutionary origins of shelterin are unclear, partly because unicellular organisms have distinct telomeric proteins. Here, we describe the evolution of metazoan shelterin, showing that TRF1 emerged in vertebrates upon duplication of a TRF2-like ancestor. TRF1 and TRF2 diverged rapidly during vertebrate evolution through the acquisition of new domains and interacting fac

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32

Spieth, J., Y. H. Shim, K. Lea, R. Conrad, and T. Blumenthal. "elt-1, an embryonically expressed Caenorhabditis elegans gene homologous to the GATA transcription factor family." Molecular and Cellular Biology 11, no. 9 (1991): 4651–59. http://dx.doi.org/10.1128/mcb.11.9.4651-4659.1991.

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The short, asymmetrical DNA sequence to which the vertebrate GATA family of transcription factors binds is present in some Caenorhabditis elegans gene regulatory regions: it is required for activation of the vitellogenin genes and is also found just 5' of the TATA boxes of tra-2 and the msp genes. In vertebrates GATA-1 is specific to erythroid lineages, whereas GATA-2 and GATA-3 are present in multiple tissues. In an effort to identify the trans-acting factors that may recognize this sequence element in C. elegans, we used a degenerate oligonucleotide to clone a C. elegans homolog to this gene

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33

Spieth, J., Y. H. Shim, K. Lea, R. Conrad, and T. Blumenthal. "elt-1, an embryonically expressed Caenorhabditis elegans gene homologous to the GATA transcription factor family." Molecular and Cellular Biology 11, no. 9 (1991): 4651–59. http://dx.doi.org/10.1128/mcb.11.9.4651.

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Анотація:

The short, asymmetrical DNA sequence to which the vertebrate GATA family of transcription factors binds is present in some Caenorhabditis elegans gene regulatory regions: it is required for activation of the vitellogenin genes and is also found just 5' of the TATA boxes of tra-2 and the msp genes. In vertebrates GATA-1 is specific to erythroid lineages, whereas GATA-2 and GATA-3 are present in multiple tissues. In an effort to identify the trans-acting factors that may recognize this sequence element in C. elegans, we used a degenerate oligonucleotide to clone a C. elegans homolog to this gene

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34

Angeloni, Allegra, and Ozren Bogdanovic. "Sequence determinants, function, and evolution of CpG islands." Biochemical Society Transactions 49, no. 3 (2021): 1109–19. http://dx.doi.org/10.1042/bst20200695.

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In vertebrates, cytosine-guanine (CpG) dinucleotides are predominantly methylated, with ∼80% of all CpG sites containing 5-methylcytosine (5mC), a repressive mark associated with long-term gene silencing. The exceptions to such a globally hypermethylated state are CpG-rich DNA sequences called CpG islands (CGIs), which are mostly hypomethylated relative to the bulk genome. CGIs overlap promoters from the earliest vertebrates to humans, indicating a concerted evolutionary drive compatible with CGI retention. CGIs are characterised by DNA sequence features that include DNA hypomethylation, eleva

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35

Vander Zanden, Crystal M., Ryan S. Czarny, Ethan N. Ho, Adam B. Robertson, and P. Shing Ho. "Structural adaptation of vertebrate endonuclease G for 5-hydroxymethylcytosine recognition and function." Nucleic Acids Research 48, no. 7 (2020): 3962–74. http://dx.doi.org/10.1093/nar/gkaa117.

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Abstract Modified DNA bases functionally distinguish the taxonomic forms of life—5-methylcytosine separates prokaryotes from eukaryotes and 5-hydroxymethylcytosine (5hmC) invertebrates from vertebrates. We demonstrate here that mouse endonuclease G (mEndoG) shows specificity for both 5hmC and Holliday junctions. The enzyme has higher affinity (&gt;50-fold) for junctions over duplex DNAs. A 5hmC-modification shifts the position of the cut site and increases the rate of DNA cleavage in modified versus unmodified junctions. The crystal structure of mEndoG shows that a cysteine (Cys69) is posi

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36

Xu, Xiaocui, Guoqiang Li, Congru Li, et al. "Evolutionary transition between invertebrates and vertebrates via methylation reprogramming in embryogenesis." National Science Review 6, no. 5 (2019): 993–1003. http://dx.doi.org/10.1093/nsr/nwz064.

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ABSTRACT Major evolutionary transitions are enigmas, and the most notable enigma is between invertebrates and vertebrates, with numerous spectacular innovations. To search for the molecular connections involved, we asked whether global epigenetic changes may offer a clue by surveying the inheritance and reprogramming of parental DNA methylation across metazoans. We focused on gametes and early embryos, where the methylomes are known to evolve divergently between fish and mammals. Here, we find that methylome reprogramming during embryogenesis occurs neither in pre-bilaterians such as cnidarian

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37

KRAWETZ, STEPHEN A., WAYNE CONNOR, and GORDON H. DIXON. "Cloning of Bovine P1 Protamine cDNA and the Evolution of Vertebrate P1 Protamines." DNA 6, no. 1 (1987): 47–57. http://dx.doi.org/10.1089/dna.1987.6.47.

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38

Semlow, Daniel R., and Johannes C. Walter. "Mechanisms of Vertebrate DNA Interstrand Cross-Link Repair." Annual Review of Biochemistry 90, no. 1 (2021): 107–35. http://dx.doi.org/10.1146/annurev-biochem-080320-112510.

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DNA interstrand cross-links (ICLs) covalently connect the two strands of the double helix and are extremely cytotoxic. Defective ICL repair causes the bone marrow failure and cancer predisposition syndrome, Fanconi anemia, and upregulation of repair causes chemotherapy resistance in cancer. The central event in ICL repair involves resolving the cross-link (unhooking). In this review, we discuss the chemical diversity of ICLs generated by exogenous and endogenous agents. We then describe how proliferating and nonproliferating vertebrate cells unhook ICLs. We emphasize fundamentally new unhookin

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39

Lynggaard, Christina, Mads Frost Bertelsen, Casper V. Jensen, et al. "Airborne environmental DNA for terrestrial vertebrate community monitoring." Current Biology 32, no. 3 (2022): 701–7. http://dx.doi.org/10.1016/j.cub.2021.12.014.

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40

Pennisi, E. "Frog DNA Yields Clues to Vertebrate Genome Evolution." Science 328, no. 5978 (2010): 555. http://dx.doi.org/10.1126/science.328.5978.555.

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Parplys, Ann C., Katja Kratz, Michael C. Speed, Stanley G. Leung, David Schild, and Claudia Wiese. "RAD51AP1 -deficiency in vertebrate cells impairs DNA replication." DNA Repair 24 (December 2014): 87–97. http://dx.doi.org/10.1016/j.dnarep.2014.09.007.

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42

Ehrlich, M. "The Controversial Denouement of Vertebrate DNA Methylation Research." Biochemistry (Moscow) 70, no. 5 (2005): 568–75. http://dx.doi.org/10.1007/s10541-005-0150-z.

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Che Lah, Ernieenor Faraliana, Amartuvshin Tsolmon, and Mariana Ahamad. "MOLECULAR IDENTIFICATION OF LOCAL VERTEBRATE SPECIES USING CYTOCHROME OXIDASE SUBUNIT I (COI) GENE." JOURNAL OF ADVANCES IN BIOTECHNOLOGY 5, no. 1 (2015): 570–77. http://dx.doi.org/10.24297/jbt.v5i1.1594.

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The aim of this study is to determine a molecular tool for identification of local vertebrate species using mtDNA COI gene. Polymerase Chain Reaction (PCR) using universal primers complementary to the conserved region of the mitochondrial DNA (mtDNA) cytochrome oxidase subunit I (COI) gene fragment, was performed on DNA of blood samples of 30 local animals in Malaysia. DNA of hosts was amplified by PCR and the products were visualized on gel electrophoresis. Twenty two sequences (73.3%) were obtained and compared with sequences registered in GenBank and BOLD Systems databases. The BLAST result

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Takenaka, Katsuya, Tomoo Ogi, Takashi Okada та ін. "Involvement of Vertebrate Polκ in Translesion DNA Synthesis across DNA Monoalkylation Damage". Journal of Biological Chemistry 281, № 4 (2005): 2000–2004. http://dx.doi.org/10.1074/jbc.m506153200.

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Feehery, George R., Erbay Yigit, Samuel O. Oyola, et al. "A Method for Selectively Enriching Microbial DNA from Contaminating Vertebrate Host DNA." PLoS ONE 8, no. 10 (2013): e76096. http://dx.doi.org/10.1371/journal.pone.0076096.

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Zhang, Jing, Liam J. Hawkins, and Kenneth B. Storey. "DNA methylation and regulation of DNA methyltransferases in a freeze-tolerant vertebrate." Biochemistry and Cell Biology 98, no. 2 (2020): 145–53. http://dx.doi.org/10.1139/bcb-2019-0091.

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The wood frog is one of the few freeze-tolerance vertebrates. This is accomplished in part by the accumulation of cryoprotectant glucose, metabolic rate depression, and stress response activation. These may be achieved by mechanisms such as DNA methylation, which is typically associated with transcriptional repression. Hyperglycemia is also associated with modifications to epigenetic profiles, indicating an additional role that the high levels of glucose play in freeze tolerance. We sought to determine whether DNA methylation is affected during freezing exposure, and whether this is due to the

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47

Rus Hoelzel, A. "Evolution by DNA turnover in the control region of vertebrate mitochondrial DNA." Current Opinion in Genetics & Development 3, no. 6 (1993): 891–95. http://dx.doi.org/10.1016/0959-437x(93)90010-m.

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Roder, Karim, Ming-Shiu Hung, Tai-Lin Lee, et al. "Transcriptional Repression by DrosophilaMethyl-CpG-Binding Proteins." Molecular and Cellular Biology 20, no. 19 (2000): 7401–9. http://dx.doi.org/10.1128/mcb.20.19.7401-7409.2000.

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ABSTRACT C methylation at genomic CpG dinucleotides has been implicated in the regulation of a number of genetic activities during vertebrate cell differentiation and embryo development. The methylated CpG could induce chromatin condensation through the recruitment of histone deacetylase (HDAC)-containing complexes by methyl-CpG-binding proteins. These proteins consist of the methylated-DNA binding domain (MBD). Unexpectedly, however, several studies have identified MBD-containing proteins encoded by genes of Drosophila melanogaster, an invertebrate species supposed to be void of detectable m5

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Theofanopoulou, Constantina, Gregory Gedman, James A. Cahill, Cedric Boeckx, and Erich D. Jarvis. "Universal nomenclature for oxytocin–vasotocin ligand and receptor families." Nature 592, no. 7856 (2021): 747–55. http://dx.doi.org/10.1038/s41586-020-03040-7.

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AbstractOxytocin (OXT; hereafter OT) and arginine vasopressin or vasotocin (AVP or VT; hereafter VT) are neurotransmitter ligands that function through specific receptors to control diverse functions1,2. Here we performed genomic analyses on 35 species that span all major vertebrate lineages, including newly generated high-contiguity assemblies from the Vertebrate Genomes Project3,4. Our findings support the claim5 that OT (also known as OXT) and VT (also known as AVP) are adjacent paralogous genes that have resulted from a local duplication, which we infer was through DNA transposable element

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Chalopin, Domitille, Delphine Galiana, and Jean-Nicolas Volff. "Genetic Innovation in Vertebrates: Gypsy Integrase Genes and Other Genes Derived from Transposable Elements." International Journal of Evolutionary Biology 2012 (August 13, 2012): 1–11. http://dx.doi.org/10.1155/2012/724519.

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Due to their ability to drive DNA rearrangements and to serve as a source of new coding and regulatory sequences, transposable elements (TEs) are considered as powerful evolutionary agents within genomes. In this paper, we review the mechanism of molecular domestication, which corresponds to the formation of new genes derived from TE sequences. Many genes derived from retroelements and DNA transposons have been identified in mammals and other vertebrates, some of them fulfilling essential functions for the development and survival of their host organisms. We will particularly focus on the evol

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