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1

SATO, Tetsuya, Yoshihiro YAMANISHI, Minoru KANEHISA, and Hiroyuki TOH. "Prediction of Protein-Protein Interactions by Using Co-Evolutionary Information." Seibutsu Butsuri 47, no. 1 (2007): 004–11. http://dx.doi.org/10.2142/biophys.47.004.

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2

Fukuhara, N., T. Kawabata, and N. Go. "Prediction of protein-protein interaction sites on the basis of the distribution of the surface residues." Seibutsu Butsuri 43, supplement (2003): S212. http://dx.doi.org/10.2142/biophys.43.s212_3.

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3

Ishigaki, K., T. Ishida, T. Terada, S. Nakamura, and K. Shimizu. "1P049 Prediction of protein-protein interaction residues by using Support Vector Machine." Seibutsu Butsuri 44, supplement (2004): S42. http://dx.doi.org/10.2142/biophys.44.s42_1.

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4

Saito, M., and T. Shirai. "apprication of empirical protein-ligand prediction method for DNA-protein interaction." Seibutsu Butsuri 41, supplement (2001): S80. http://dx.doi.org/10.2142/biophys.41.s80_3.

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5

UCHIKOGA, Nobuyuki, and Takatsugu HIROKAWA. "Post-docking Analysis with Protein-protein Interaction Fingerprints." Seibutsu Butsuri 51, no. 1 (2011): 028–29. http://dx.doi.org/10.2142/biophys.51.028.

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6

Fukuhara, N., T. Kawabata, and N. Go. "1P284 Prediction of protein-protein interaction using statistical potential." Seibutsu Butsuri 45, supplement (2005): S102. http://dx.doi.org/10.2142/biophys.45.s102_4.

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7

Kanamori, E., K. Kinoshita, and H. Nakamura. "3P010 Prediction of protein-protein interaction using Evolutionary Trace method and molecular surface shape complementarities." Seibutsu Butsuri 45, supplement (2005): S206. http://dx.doi.org/10.2142/biophys.45.s206_2.

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8

Toh, Hiroyuki, and Tetsuya Sato. "1SA1-03 Prediction of protein-protein interaction with co-evolutionary information(1SA1 Co-evolutionary analyses as the methods to investigate protein-protein interaction,The 47th Annual Meeting of the Biophysical Society of Japan)." Seibutsu Butsuri 49, supplement (2009): S3. http://dx.doi.org/10.2142/biophys.49.s3_3.

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9

Uchikoga, Nobuyuki, and Takatsugu Hirokawa. "2TP4-03 Post-docking process for flexible protein docking problems by using interaction fingerprints(The 47th Annual Meeting of the Biophysical Society of Japan)." Seibutsu Butsuri 49, supplement (2009): S50. http://dx.doi.org/10.2142/biophys.49.s50_1.

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10

Uchikoga, Nobuyuki, Yuri Matsuzaki, Masahito Ohue, Takatsugu Hirokawa, and Yutaka Akiyama. "2P267 Re-docking scheme for prediction of protein-protein interactions using interaction fingerprints(22A. Bioinformatics: Structural genomics,Poster)." Seibutsu Butsuri 53, supplement1-2 (2013): S203. http://dx.doi.org/10.2142/biophys.53.s203_2.

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11

Nagao, Chioko, Ahmad Shandar, and Kenji Mizuguchi. "1P249 Prediction of protein-protein interaction sites using expected solvent accessibility changes and neural networks(Bioinformatics-structural genomics,Poster Presentations)." Seibutsu Butsuri 47, supplement (2007): S85. http://dx.doi.org/10.2142/biophys.47.s85_4.

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12

Kakuta, Masanori, Kazuya Sumikoshi, Shugo Nakamura, and Kentaro Shimizu. "3P-290 Prediction of protein-protein interactions using domain sequences(The 46th Annual Meeting of the Biophysical Society of Japan)." Seibutsu Butsuri 48, supplement (2008): S172. http://dx.doi.org/10.2142/biophys.48.s172_4.

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13

Hirose, Shuichi, Kiyonobu Yokota, Hiroshi Wako, Shigeru Endo, Satoru Kanai, and Tamotsu Noguchi. "1P-237 Prediction of protein motion from amino acid sequence and its application to protein-protein interaction(Bioinformatics:Structural genomics, The 47th Annual Meeting of the Biophysical Society of Japan)." Seibutsu Butsuri 49, supplement (2009): S99. http://dx.doi.org/10.2142/biophys.49.s99_2.

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14

Satio, M., T. Shirai, and M. Go. "1R1445 Apprication of empirical protein-ligand prediction method for DNA-protein interaction." Seibutsu Butsuri 42, supplement2 (2002): S97. http://dx.doi.org/10.2142/biophys.42.s97_4.

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15

Minai, Ryoichi, Yo Matsuo, and Hiroshi Hirota. "1P255 A New method for comparing the structures of protein ligand-binding sites and its application for predicting protein-drug interactions(Bioinformatics-structural genomics,Poster Presentations)." Seibutsu Butsuri 47, supplement (2007): S87. http://dx.doi.org/10.2142/biophys.47.s87_2.

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16

Ohue, Masahito, Yuri Matsuzaki, Nobuyuki Uchikoga, Takashi Ishida, and Yutaka Akiyama. "2P014 MEGADOCK: a high-performance protein-protein interaction prediction tool on supercomputing environments(01A. Protein: Structure,Poster,The 52nd Annual Meeting of the Biophysical Society of Japan(BSJ2014))." Seibutsu Butsuri 54, supplement1-2 (2014): S197. http://dx.doi.org/10.2142/biophys.54.s197_2.

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17

Mieda, Shunsuke, and Misako Aida. "1P-103 Study of coarse graining for prediction of interaction between protein and DNA(Electronic state, The 47th Annual Meeting of the Biophysical Society of Japan)." Seibutsu Butsuri 49, supplement (2009): S79. http://dx.doi.org/10.2142/biophys.49.s79_7.

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18

Kawabata, Takeshi, Haruki Nakamura, and Akira Kinjo. "2PT103 3D complex structure assignment for evolutionary conserved protein-protein interactions(The 50th Annual Meeting of the Biophysical Society of Japan)." Seibutsu Butsuri 52, supplement (2012): S121—S122. http://dx.doi.org/10.2142/biophys.52.s121_6.

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19

Nakamori, Kota, Shintaro Minami, Kengo Sawada, and George Chikenji. "1E1448 Development of a novel protein structure predicion method emphasizing non-local interaction(Genome biology, Bioinformatics,The 49th Annual Meeting of the Biophysical Society of Japan)." Seibutsu Butsuri 51, supplement (2011): S40. http://dx.doi.org/10.2142/biophys.51.s40_5.

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20

Tsujikawa, Hiroto, Yusuke Umeda, Mizuki Morita, Shugo Nakamura, and Kentaro Shimizu. "2PT101 Protein-Ligand Binding Site Prediction by Using Energy-based Method with Amino Acid Conservation Scores(The 50th Annual Meeting of the Biophysical Society of Japan)." Seibutsu Butsuri 52, supplement (2012): S121. http://dx.doi.org/10.2142/biophys.52.s121_4.

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