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Journal articles on the topic '10b encoders'

Author: Grafiati

Published: 3 June 2025

Last updated: 31 July 2025

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1

Popa, Stefan, Mihai Ivanovici, and Radu-Mihai Coliban. "Optimal Implementations of 8b/10b Encoders and Decoders for AMD FPGAs." Electronics 13, no. 6 (2024): 1062. http://dx.doi.org/10.3390/electronics13061062.

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The 8b/10b IBM encoding scheme is used in a plethora of communication technologies, including USB, Gigabit Ethernet, and Serial ATA. We propose two primitive-based structural designs of an 8b/10b encoder and two of an 8b/10b decoder, all targeted at modern AMD FPGA architectures. Our aim is to reduce the amount of resources used for the implementations. We compare our designs with implementations resulting from behavioral models as well as with state-of-the-art solutions from the literature. The implementation results show that our solutions provide the lowest resource utilization with compara

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McGonigle, Glenda J., Damian P. J. Finnegan, Mary Frances McMullin, Terence R. J. Lappin, and Alexander Thompson. "HOXA6: A Novel Candidate Gene in AML." Blood 108, no. 11 (2006): 2312. http://dx.doi.org/10.1182/blood.v108.11.2312.2312.

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Abstract Molecular classification of acute myeloid leukemia (AML) has identified several candidate genes that could potentially define prognosis and response to therapy. One such candidate, identified from microarray studies, is the Class I homeobox gene HOXA9. The HOX gene network encodes master regulators of developmental processes including hemopoiesis. To quantify the contribution of this network of genes in AML, we carried out specific RQ-PCR analysis on twenty-four de novo patient samples using a subset of genes (12 HOX and MEIS1) selected on the basis of their recently reported expressi

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Alharbi, Majed, Ahmed Stohy, Mohammed Elhenawy, Mahmoud Masoud, and Hamiden El-Wahed Khalifa. "Solving Traveling Salesman Problem with Time Windows Using Hybrid Pointer Networks with Time Features." Sustainability 13, no. 22 (2021): 12906. http://dx.doi.org/10.3390/su132212906.

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This paper introduces a time efficient deep learning-based solution to the traveling salesman problem with time window (TSPTW). Our goal is to reduce the total tour length traveled by -*the agent without violating any time limitations. This will aid in decreasing the time required to supply any type of service, as well as lowering the emissions produced by automobiles, allowing our planet to recover from air pollution emissions. The proposed model is a variation of the pointer networks that has a better ability to encode the TSPTW problems. The model proposed in this paper is inspired from our

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Song, Siqi, Heguo Yin, Jianzhong Zhao, Yi Zhan, and Peter Poechmueller. "An 8B/10B parallel encoder design for the polarity pre-processing." Journal of Physics: Conference Series 2450, no. 1 (2023): 012055. http://dx.doi.org/10.1088/1742-6596/2450/1/012055.

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Abstract To tackle the high latency and slow encoding speed of 8B/10B encoder circuits in high-speed serial interfaces, a parallel structure for polarity pre-processing based on logic operations is proposed to optimize encoder performance in this article. Firstly, the encoding process is divided into polarity pre-processing and coding two pipeline stages. This method equals each stage’s delay and decreases the coding waiting period. Additionally, the structure employs polarity pre-processing to optimize the critical delay paths into multi-stage heterodyne gates in series. Therefore, the effect

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Winter, Linda E., and Stephen J. Barenkamp. "Construction and Immunogenicity of Recombinant Adenovirus Vaccines Expressing the HMW1, HMW2, or Hia Adhesion Protein of Nontypeable Haemophilus influenzae." Clinical and Vaccine Immunology 17, no. 10 (2010): 1567–75. http://dx.doi.org/10.1128/cvi.00115-10.

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ABSTRACT The objective of the present study was to construct and assess the immunogenicity of recombinant adenovirus vectors expressing the HMW1, HMW2, or Hia protein of nontypeable Haemophilus influenzae (NTHi). These proteins are critical adhesins and potential protective antigens expressed by NTHi. Segments of the hmw1A and hmw2A structural genes that encode the distal one-half of mature HMW1 or HMW2 were cloned into the T7 expression vector pGEMEX-2. These constructs encoded stable HMW1 or HMW2 recombinant fusion protein that expresses B-cell epitopes common to most NTHi strains. A segment

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Kanold, Patrick O., and Paul B. Manis. "Encoding the Timing of Inhibitory Inputs." Journal of Neurophysiology 93, no. 5 (2005): 2887–97. http://dx.doi.org/10.1152/jn.00910.2004.

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Many neuronal systems represent information by the timing of individual spikes, and it is generally assumed that spike timing predominantly encodes excitatory inputs. We show here that the timing of inhibition can also be explicitly encoded in spike times using time-dependent and voltage-dependent properties of a rapidly inactivating potassium channel ( IKIF). In vitro recordings in rat dorsal cochlear nucleus show that the effects of inhibition on spike timing can long outlast the duration of the inhibitory potential and that this depends only on the membrane voltage change during the inhibit

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Chen, Zhang Jin, Guo Hai Zhong, and Zhuo Bi. "A High Speed 8B/10B Encoder/Decoder Design Based on Low Cost FPGA." Advanced Materials Research 462 (February 2012): 361–67. http://dx.doi.org/10.4028/www.scientific.net/amr.462.361.

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A high speed 8B/10B Encoder/Decoder is presented in this paper. The Encoder/Decoder is based on Altera’s low cost FPGA Cyclone family. The Encoder/Decoder includes parallel pipeline structure. The Encoder/Decoder is applied to the Serializer/Deserializer (SERDES) of high-speed serial bus. The Encoder/Decoder is synthesized and simulated by Quartus II 9.1. The synthesis and analysis results show the maximum frequency is more than 359MHz. The timing simulation results show the clock frequency is more than 125 MHz. The single channel data rate of serial bus can get to 1.25Gbps. The proposed Encod

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Van Horn, Marion R., and Kathleen E. Cullen. "Dynamic Coding of Vertical Facilitated Vergence by Premotor Saccadic Burst Neurons." Journal of Neurophysiology 100, no. 4 (2008): 1967–82. http://dx.doi.org/10.1152/jn.90580.2008.

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To redirect our gaze in three-dimensional space we frequently combine saccades and vergence. These eye movements, known as disconjugate saccades, are characterized by eyes rotating by different amounts, with markedly different dynamics, and occur whenever gaze is shifted between near and far objects. How the brain ensures the precise control of binocular positioning remains controversial. It has been proposed that the traditionally assumed “conjugate” saccadic premotor pathway does not encode conjugate commands but rather encodes monocular commands for the right or left eye during saccades. He

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Williams-Hart, Tara, Xiaolin Wu, and Kelly Tatchell. "Protein Phosphatase Type 1 Regulates Ion Homeostasis in Saccharomyces cerevisiae." Genetics 160, no. 4 (2002): 1423–37. http://dx.doi.org/10.1093/genetics/160.4.1423.

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Abstract Protein phosphatase type 1 (PP1) is encoded by the essential gene GLC7 in Saccharomyces cerevisiae. glc7-109 (K259A, R260A) has a dominant, hyperglycogen defect and a recessive, ion and drug sensitivity. Surprisingly, the hyperglycogen phenotype is partially retained in null mutants of GAC1, GIP2, and PIG1, which encode potential glycogen-targeting subunits of Glc7. The R260A substitution in GLC7 is responsible for the dominant and recessive traits of glc7-109. Another mutation at this residue, glc7-R260P, confers only salt sensitivity, indicating that the glycogen and salt traits of

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Ma, Shangchen, and Chunlin Song. "Semi-Supervised Drivable Road Segmentation with Expanded Feature Cross-Consistency." Applied Sciences 13, no. 21 (2023): 12036. http://dx.doi.org/10.3390/app132112036.

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Drivable road segmentation aims to sense the surrounding environment to keep vehicles within safe road boundaries, which is fundamental in Advance Driver-Assistance Systems (ADASs). Existing deep learning-based supervised methods are able to achieve good performance in this field with large amounts of human-labeled training data. However, the process of collecting sufficient fine human-labeled data is extremely time-consuming and expensive. To fill this gap, in this paper, we innovatively propose a general yet effective semi-supervised method for drivable road segmentation with lower labeled-d

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Verma, S. K., and B. K. Kaushik. "Bus encoder design for crosstalk and power reduction in RLC modelled VLSI interconnects." Journal of Engineering, Design and Technology 13, no. 3 (2015): 486–98. http://dx.doi.org/10.1108/jedt-05-2013-0040.

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Purpose – This paper aims to reduce the worst-case crosstalk effects for resistance, inductance and capacitance (RLC) interconnects using the bus encoding technique. In current nanoscale technology, power dissipation, propagation delay and crosstalk performance of interconnects determine the overall performance of a chip. Signal integrity issues due to crosstalk in the form of voltage glitches, overshoots, undershoots, undesirable noise, propagation speed ups and downs, etc. are some of the major deterrents for high-performance RLC modelled (VLSI) interconnects. This research paper primarily p

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Harrington, K., M. Hingorani, M. Tanay, et al. "Phase I/II dose escalation study of OncoVexGM-CSF and chemoradiotherapy (CRT) in untreated stage III/IV squamous cell cancer of the head and neck (SCCHN)." Journal of Clinical Oncology 27, no. 15_suppl (2009): 6018. http://dx.doi.org/10.1200/jco.2009.27.15_suppl.6018.

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6018 Background: OncoVEXGM-CSF is a gene deleted (ICP34.5-/ICP47) oncolytic HSV-1 that encodes human GM-CSF. OncoVEXGM-CSF causes direct oncolytic tumour cell destruction and immune activation by releasing tumour antigens and GM-CSF, effects that may co-operate with CRT to increase loco-regional control in SCCHN. Methods: Patients (pts): Stage III/IVA SCCHN, N1-N3, ECOG 0–1, normal haematologic, biochemical, immune function. Pts received CRT (70 Gy/35 fractions with concomitant cisplatin 100 mg/m2 (d 1, 22, 43) and dose-escalating (106, 106, 106, 106 pfu/mL [cohort 1]; 106, 107, 107, 107 [coho

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Kim, Yong-Woo, Beomseok Shin, and Jin-Ku Kang. "High-speed 8B/10B encoder design using a simplified coding table." IEICE Electronics Express 5, no. 16 (2008): 581–85. http://dx.doi.org/10.1587/elex.5.581.

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14

Wang, Shengtong, Baiqi Liao, Ningning Shi, and Xinghui Li. "A Compact and High-Precision Three-Degree-of-Freedom Grating Encoder Based on a Quadrangular Frustum Pyramid Prism." Sensors 23, no. 8 (2023): 4022. http://dx.doi.org/10.3390/s23084022.

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A compact and high-precision three-degrees-of-freedom (DOF; X, Y, and Z directions) grating encoder based on the quadrangular frustum pyramid (QFP) prisms is proposed in this paper to solve the insufficient installation space problem of the reading head of the multi-DOF in high-precision displacement measurement applications. The encoder is based on the grating diffraction and interference principle, and a three-DOF measurement platform is built through the self-collimation function of the miniaturized QFP prism. The overall size of the reading head is 12.3 × 7.7 × 3 cm3 and has the potential

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15

Liou, L. S., R. Sastry, K. L. Hartshorn, et al. "Bovine conglutinin gene exon structure reveals its evolutionary relationship to surfactant protein-D." Journal of Immunology 153, no. 1 (1994): 173–80. http://dx.doi.org/10.4049/jimmunol.153.1.173.

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Abstract Bovine conglutinin (BC), a member of the mammalian C-type collectin subfamily, is a serum protein synthesized in liver that is believed to play a role in natural host defense. Previously, we have characterized a full length BC cDNA and we now describe the partial characterization of a genomic clone that encodes for the BC gene (CGN1). BC is encoded by nine exons spanning &gt; 11 kb and has been localized previously to band 18 of bovine (Bos taurus) chromosome 28. Genomic sequencing demonstrated that the signal peptide/amino-terminal domain, the carbohydrate recognition domain, and

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Kubo, Nakao, Shin-ichi Arimura, Nobuhiro Tsutsumi, Koh-ichi Kadowaki, and Masashi Hirai. "Isolation and characterization of the pea cytochrome c oxidase Vb gene." Genome 49, no. 11 (2006): 1481–89. http://dx.doi.org/10.1139/g06-105.

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Three copies of the gene that encodes cytochrome c oxidase subunit Vb were isolated from the pea (PscoxVb-1, PscoxVb-2, and PscoxVb-3). Northern Blot and reverse transcriptase-PCR analyses suggest that all 3 genes are transcribed in the pea. Each pea coxVb gene has an N-terminal extended sequence that can encode a mitochondrial targeting signal, called a presequence. The localization of green fluorescent proteins fused with the presequence strongly suggests the targeting of pea COXVb proteins to mitochondria. Each pea coxVb gene has 5 intron sites within the coding region. These are similar to

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17

Kovalev, V. Y., and A. G. Shishkin. "Automatic segmentation of intracytoplasmic sperm injection images." Computer Optics 46, no. 4 (2022): 628–33. http://dx.doi.org/10.18287/2412-6179-co-1060.

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In this paper, a multiclass image semantic segmentation problem was solved. For analysis, images of the intracytoplasmic sperm injection process were used. For training the neural network, 656 frames were manually labelled. As a result, each pixel of the images was assigned to one of four classes: microinjector, suction micropipette, oolemma, background. An analysis of modern approaches was carried out and the best architecture, encoders, and hyperparameters of the neural network were selected experimentally: the convolutional neural network FPN (feature pyramid network) with the resnext101 en

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NANNIPIERI, Pietro, Daniele DAVALLE, and Luca FANUCCI. "A Novel Parallel 8B/10B Encoder: Architecture and Comparison with Classical Solution." IEICE Transactions on Fundamentals of Electronics, Communications and Computer Sciences E101.A, no. 7 (2018): 1120–22. http://dx.doi.org/10.1587/transfun.e101.a.1120.

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19

Wu, Kai, Zugang Chen, Xinqian Wu, et al. "Extracting Geoscientific Dataset Names from the Literature Based on the Hierarchical Temporal Memory Model." ISPRS International Journal of Geo-Information 13, no. 7 (2024): 260. http://dx.doi.org/10.3390/ijgi13070260.

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Extracting geoscientific dataset names from the literature is crucial for building a literature–data association network, which can help readers access the data quickly through the Internet. However, the existing named-entity extraction methods have low accuracy in extracting geoscientific dataset names from unstructured text because geoscientific dataset names are a complex combination of multiple elements, such as geospatial coverage, temporal coverage, scale or resolution, theme content, and version. This paper proposes a new method based on the hierarchical temporal memory (HTM) model, a b

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Luo, Dawei, Heng Zhou, Joonsoo Bae, and Bom Yun. "Combining Contrastive Learning with Auto-Encoder for Out-of-Distribution Detection." Applied Sciences 13, no. 23 (2023): 12930. http://dx.doi.org/10.3390/app132312930.

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Reliability and robustness are fundamental requisites for the successful integration of deep-learning models into real-world applications. Deployed models must exhibit an awareness of their limitations, necessitating the ability to discern out-of-distribution (OOD) data and prompt human intervention, a critical competency. While several frameworks for OOD detection have been introduced and achieved remarkable results, most state-of-the-art (SOTA) models rely on supervised learning with annotated data for their training. However, acquiring labeled data can be a demanding, time-consuming or, in

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Gu, Young Mo, Woonmoon Lee, and Bokki Kim. "Telemetry Standard 106-17 LDPC Encoder Design Using HLS." Journal of the Korean Society for Aeronautical & Space Sciences 48, no. 10 (2020): 831–35. http://dx.doi.org/10.5139/jksas.2020.48.10.831.

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22

Kaempfer, Raymond. "RNA Activators of Stress Kinase PKR within Human Genes That Control Splicing or Translation Create Novel Targets for Hereditary Diseases." International Journal of Molecular Sciences 25, no. 2 (2024): 1323. http://dx.doi.org/10.3390/ijms25021323.

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Specific sequences within RNA encoded by human genes essential for survival possess the ability to activate the RNA-dependent stress kinase PKR, resulting in phosphorylation of its substrate, eukaryotic translation initiation factor-2α (eIF2α), either to curb their mRNA translation or to enhance mRNA splicing. Thus, interferon-γ (IFNG) mRNA activates PKR through a 5′-terminal 203-nucleotide pseudoknot structure, thereby strongly downregulating its own translation and preventing a harmful hyper-inflammatory response. Tumor necrosis factor-α (TNF) pre-mRNA encodes within the 3′-untranslated regi

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23

Naumann, Todd A., and Donald T. Wicklow. "Allozyme-Specific Modification of a Maize Seed Chitinase by a Protein Secreted by the Fungal Pathogen Stenocarpella maydis." Phytopathology® 100, no. 7 (2010): 645–54. http://dx.doi.org/10.1094/phyto-100-7-0645.

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Stenocarpella maydis causes both dry-ear rot and stalk rot of maize. Maize inbred lines have varying levels of resistance to ear rot caused by S. maydis. The genetic basis of resistance appears to rely on multiple genetic factors, none of which are known. The commonly used stiff-stalk inbred line B73 has been shown to be strongly susceptible to ear rot caused by S. maydis. Here, we report that the ChitA protein alloform from B73, ChitA-F, encoded by a known allele of the chiA gene, is susceptible to modification by a protein (Stm-cmp) secreted by S. maydis. We also identify a new allele of chi

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Yousef, O. Sharrab, Alsmirat Mohammad, Hawashin Bilal, and Sarhan Nabil. "Machine learning-based energy consumption modeling and comparing of H.264 and Google VP8 encoders." International Journal of Electrical and Computer Engineering (IJECE) 11, no. 2 (2021): 1303–10. https://doi.org/10.11591/ijece.v11i2.pp1303-1310.

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Advancement of the prediction models used in a variety of fields is a result of the contribution of machine learning approaches. Utilizing such modeling in feature engineering is exceptionally imperative and required. In this research, we show how to utilize machine learning to save time in research experiments, where we save more than five thousand hours of measuring the energy consumption of encoding recordings. Since measuring the energy consumption has got to be done by humans and since we require more than eleven thousand experiments to cover all the combinations of video sequences, video

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Graziano, R. F., and P. M. Allen. "Enhancing the immunogenicity of a permissive binding T cell epitope derived from the simian immunodeficiency virus-encoded negative regulatory factor." Journal of Immunology 149, no. 2 (1992): 556–61. http://dx.doi.org/10.4049/jimmunol.149.2.556.

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Abstract Using the murine system we have analyzed an immunogenic T cell peptide epitope corresponding to amino acids 96-112 of the simian immunodeficiency virus-negative regulatory protein sequence. This epitope was unusual in that it was strongly immunogenic in mice of five of the six H-2 haplotypes tested. We generated a T cell hybridoma (SVNF) specific for this peptide in order to determine how manipulating the peptide might alter its immunogenicity. Substitution analysis showed that His 103, Pro 104, Val 106, and Pro 107 were important amino acids for stimulating SVNF because substitutions

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Wang, N., S. Gottesman, M. C. Willingham, M. M. Gottesman, and M. R. Maurizi. "A human mitochondrial ATP-dependent protease that is highly homologous to bacterial Lon protease." Proceedings of the National Academy of Sciences 90, no. 23 (1993): 11247–51. http://dx.doi.org/10.1073/pnas.90.23.11247.

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We have cloned a human ATP-dependent protease that is highly homologous to members of the bacterial Lon protease family. The cloned gene encodes a protein of 963 amino acids with a calculated molecular mass of 106 kDa, slightly higher than that observed by Western blotting the protein from human tissues and cell lines (100 kDa). A single species of mRNA was found for this Lon protease in all human tissues examined. The protease is encoded in the nucleus, and the amino-terminal portion of the protein sequence contains a potential mitochondrial targeting presequence. Immunofluorescence microscop

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Chen, Qiuxia, Xuemin Cheng, Lifang Zhang, et al. "Exploring the Lower Limit of Individual DNA-Encoded Library Molecules in Selection." SLAS DISCOVERY: Advancing the Science of Drug Discovery 25, no. 5 (2019): 523–29. http://dx.doi.org/10.1177/2472555219893949.

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DNA-encoded library (DEL) technology has been used as an ultra-high-throughput screening approach for hit identification of drug targets. This process is an affinity-based selection and requires incubation of DEL molecules with the target. Currently, in most reported cases, the input (i.e., the copy number) of individual DEL molecules varies from 105 to 107. With the ever-increasing DEL size and screening cost, lowering the input of DEL molecules while maintaining an appropriate signal-to-noise ratio in a selection is of paramount importance. In this article, we varied the input of DEL ranging

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Borovok, Ilya, Rachel Kreisberg-Zakarin, Michaela Yanko, et al. "Streptomyces spp. contain class Ia and class II ribonucleotide reductases: expression analysis of the genes in vegetative growth The GenBank/EMBL/DDBJ accession numbers for the sequences determined in this paper are AJ224870, AJ276618, AJ277778, AJ295338 and AJ295339." Microbiology 148, no. 2 (2002): 391–404. http://dx.doi.org/10.1099/00221287-148-2-391.

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Genes encoding two ribonucleotide reductases (RNRs) were identified in members of the genus Streptomyces. One gene, nrdJ, encoded an oligomeric protein comprising four identical subunits each with a molecular mass of ∼108 kDa. The activity of this protein depended on the presence of 5′-deoxyadenosylcobalamine (coenzyme B12), establishing it as a class II RNR. The Streptomyces clavuligerus nrdJ gene was cloned, using internal peptide sequences from the purified protein, and was found to encode a polypeptide of 961 aa. Molecular phylogenetic analysis showed that the S. clavuligerus class II RNR

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García-Rivera, Gerónimo, Martín Cadena-Zapata, Juan Antonio López-López, et al. "Agricultural tractor slippage measurement system using encoders." Ingeniería Agrícola y Biosistemas 13, no. 2 (2021): 261–71. http://dx.doi.org/10.5154/r.inagbi.2021.07.070.

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Introduction: Slippage is usually measured with a standard manual method, however, if it is required slippage information inline in extensive areas of cropland, mechanical and electronic equipment have to be developed. Objective: To design, assemble and evaluate (in laboratory and under field conditions) an encoder-based slippage measurement system. Methodology: The system was integrated and tested in the laboratory, where equations were generated to calculate the slippage. The system was installed in an agricultural tractor and its performance was evaluated on an asphalt track and working wit

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Araujo, Luiz, and Carlos Figueiredo. "OneTrack - An End2End approach to enhance MOT with Transformers." Journal of Internet Services and Applications 15, no. 1 (2024): 302–12. http://dx.doi.org/10.5753/jisa.2024.3914.

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This paper introduces OneTrack, an innovative end-to-end transformer-based model for Multiple Object Tracking (MOT), focusing on enhancing efficiency without significantly compromising accuracy. Addressing the challenges inherent in MOT, such as occlusions, varied object sizes, and motion prediction, OneTrack leverages the power of vision transformers and attention layers, optimizing them for real-time applications. Utilizing a unique Object Sequence Patch Input and a Vision Transformer Encoder, the model simplifies the standard transformer approach by employing only the encoder component, sig

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Willumsen, B. M., W. C. Vass, T. J. Velu, A. G. Papageorge, J. T. Schiller, and D. R. Lowy. "The bovine papillomavirus E5 oncogene can cooperate with ras: identification of p21 amino acids critical for transformation by c-rasH but not v-rasH." Molecular and Cellular Biology 11, no. 12 (1991): 6026–33. http://dx.doi.org/10.1128/mcb.11.12.6026-6033.1991.

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We have previously used a series of insertion-deletion mutants of the mutationally activated v-rasH gene to identify several regions of the encoded protein that are dispensable for cellular transformation (B. M. Willumsen, A. G. Papageorge, H.-F. Kung, E. Bekesi, T. Robins, M. Johnsen, W. C. Vass, and D. R. Lowy, Mol. Cell. Biol. 6:2646-2654, 1986). To determine if some of these amino acids are more important for the biological activity of c-rasH, we have now tested many of the same insertion-deletion mutants in the c-rasH form for their ability to transform NIH 3T3 cells. Since the transformi

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Willumsen, B. M., W. C. Vass, T. J. Velu, A. G. Papageorge, J. T. Schiller, and D. R. Lowy. "The bovine papillomavirus E5 oncogene can cooperate with ras: identification of p21 amino acids critical for transformation by c-rasH but not v-rasH." Molecular and Cellular Biology 11, no. 12 (1991): 6026–33. http://dx.doi.org/10.1128/mcb.11.12.6026.

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We have previously used a series of insertion-deletion mutants of the mutationally activated v-rasH gene to identify several regions of the encoded protein that are dispensable for cellular transformation (B. M. Willumsen, A. G. Papageorge, H.-F. Kung, E. Bekesi, T. Robins, M. Johnsen, W. C. Vass, and D. R. Lowy, Mol. Cell. Biol. 6:2646-2654, 1986). To determine if some of these amino acids are more important for the biological activity of c-rasH, we have now tested many of the same insertion-deletion mutants in the c-rasH form for their ability to transform NIH 3T3 cells. Since the transformi

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Ardhi, Ovide Decroly Wisnu, Tri Retnaningsih Soeprobowati, Kusworo Adi, Esa Prakasa, and Arief Rachman. "Enhanced U-Net models with encoder and augmentation for phytoplankton segmentation." International Journal of Advances in Applied Sciences 13, no. 4 (2024): 1009. http://dx.doi.org/10.11591/ijaas.v13.i4.pp1009-1018.

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This study comprehensively analyzes U-Net models for semantic segmentation in phytoplankton image recognition, leveraging encoders such as EfficientNet-B5, MobileNetV2, ResNet50, and ResNeXt50 and employing the Adam optimizer. The research highlights the U-Net MobileNetV2 model with optical distortion, which achieves notable test scores with 93.69% Dice, 88.14% intersection over union (IoU), 99.89% Precision, and 100% Recall, underscoring the efficacy of the applied augmentation strategies, including geometric and distortion transforms, and color and blur techniques. The U-Net ResNet50 model w

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Ovide, Decroly Wisnu Ardhi, Retnaningsih Soeprobowati Tri, Adi Kusworo, Prakasa Esa, and Rachman Arief. "Enhanced U-Net models with encoder and augmentation for phytoplankton segmentation." International Journal of Advances in Applied Sciences (IJAAS) 13, no. 4 (2024): 1009–18. https://doi.org/10.11591/ijaas.v13.i4.pp1009-1018.

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This study comprehensively analyzes U-Net models for semantic segmentation in phytoplankton image recognition, leveraging encoders such as EfficientNet-B5, MobileNetV2, ResNet50, and ResNeXt50 and employing the Adam optimizer. The research highlights the U-Net MobileNetV2 model with optical distortion, which achieves notable test scores with 93.69% Dice, 88.14% intersection over union (IoU), 99.89% Precision, and 100% Recall, underscoring the efficacy of the applied augmentation strategies, including geometric and distortion transforms, and color and blur techniques. The U-Net ResNet50 model w

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Cheng, Q., and C. A. Michels. "The maltose permease encoded by the MAL61 gene of Saccharomyces cerevisiae exhibits both sequence and structural homology to other sugar transporters." Genetics 123, no. 3 (1989): 477–84. http://dx.doi.org/10.1093/genetics/123.3.477.

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Abstract The MAL61 gene of Saccharomyces cerevisiae encodes maltose permease, a protein required for the transport of maltose across the plasma membrane. Here we report the nucleotide sequence of the cloned MAL61 gene. A single 1842 bp open reading frame is present within this region encoding the 614 residue putative MAL61 protein. Hydropathy analysis suggests that the secondary structure consists of two blocks of six transmembrane domains separated by an approximately 71 residue intracellular region. The N-terminal and C-terminal domains of 100 and 67 residues in length, respectively, also ap

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Chen, Chiung-An, Chen Wu, Patricia Abu, and Shih-Lun Chen. "VLSI Implementation of an Efficient Lossless EEG Compression Design for Wireless Body Area Network." Applied Sciences 8, no. 9 (2018): 1474. http://dx.doi.org/10.3390/app8091474.

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Data transmission of electroencephalography (EEG) signals over Wireless Body Area Network (WBAN) is currently a widely used system that comes together with challenges in terms of efficiency and effectivity. In this study, an effective Very-Large-Scale Integration (VLSI) circuit design of lossless EEG compression circuit is proposed to increase both efficiency and effectivity of EEG signal transmission over WBAN. The proposed design was realized based on a novel lossless compression algorithm which consists of an adaptive fuzzy predictor, a voting-based scheme and a tri-stage entropy encoder. T

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Luu, Tung M., Thang Vu, Thanh Nguyen, and Chang D. Yoo. "Visual Pretraining via Contrastive Predictive Model for Pixel-Based Reinforcement Learning." Sensors 22, no. 17 (2022): 6504. http://dx.doi.org/10.3390/s22176504.

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In an attempt to overcome the limitations of reward-driven representation learning in vision-based reinforcement learning (RL), an unsupervised learning framework referred to as the visual pretraining via contrastive predictive model (VPCPM) is proposed to learn the representations detached from the policy learning. Our method enables the convolutional encoder to perceive the underlying dynamics through a pair of forward and inverse models under the supervision of the contrastive loss, thus resulting in better representations. In experiments with a diverse set of vision control tasks, by initi

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Graham, Chris, David Bramall, Othman Younus, et al. "Steering Mirror System with Closed-Loop Feedback for Free-Space Optical Communication Terminals." Aerospace 11, no. 5 (2024): 330. http://dx.doi.org/10.3390/aerospace11050330.

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Precision beam pointing plays a critical role in free-space optical communications terminals in uplink, downlink and inter-satellite link scenarios. Among the various methods of beam steering, the use of fast steering mirrors (FSM) is widely adopted, with many commercial solutions employing diverse technologies, particularly focusing on small, high-bandwidth mirrors. This paper introduces a method using lightweight, commercial off-the-shelf components to construct a custom closed-loop steering mirror platform, suitable for mirror apertures exceeding 100 mm. The approach involves integrating op

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Lee, Manfred, Jianqiao Xiao, Erik Haghjoo, et al. "Murine Cytomegalovirus Containing a Mutation at Open Reading Frame M37 Is Severely Attenuated in Growth and Virulence In Vivo." Journal of Virology 74, no. 23 (2000): 11099–107. http://dx.doi.org/10.1128/jvi.74.23.11099-11107.2000.

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ABSTRACT A pool of murine cytomegalovirus (MCMV) mutants was generated by using a Tn3-based transposon mutagenesis procedure. One of the mutants, RvM37, which contained the transposon sequence at open reading frame M37, was characterized both in tissue culture and in immunocompetent BALB/c and immunodeficient SCID mice. Our results provide the first direct evidence to suggest that M37 is not essential for viral replication in vitro in NIH 3T3 cells. Compared to the wild-type strain and a rescued virus that restored the M37 region, the viral mutant was severely attenuated in growth in both BALB

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Georgieva, Sofia, Elena Nabirochkina, F. Jeffrey Dilworth, et al. "The Novel Transcription Factor e(y)2 Interacts with TAFII40 and Potentiates Transcription Activation on Chromatin Templates." Molecular and Cellular Biology 21, no. 15 (2001): 5223–31. http://dx.doi.org/10.1128/mcb.21.15.5223-5231.2001.

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ABSTRACT Weak hypomorph mutations in the enhancer of yellowgenes, e(y)1 and e(y)2, of Drosophila melanogaster were discovered during the search for genes involved in the organization of interaction between enhancers and promoters. Previously, the e(y)1 gene was cloned and found to encode TAFII40 protein. Here we cloned the e(y)2 gene and demonstrated that it encoded a new ubiquitous evolutionarily conserved transcription factor. The e(y)2 gene is located at 10C3 (36.67) region and is expressed at all stages ofDrosophila development. It encodes a 101-amino-acid protein, e(y)2. Vertebrates, inse

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Cox, K. H., and J. V. Cox. "Variant chicken AE1 anion exchangers possess divergent NH(2)-terminal cytoplasmic domains." American Journal of Physiology-Renal Physiology 268, no. 3 (1995): F503—F513. http://dx.doi.org/10.1152/ajprenal.1995.268.3.f503.

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Immunoblotting analyses have demonstrated that antibodies specific for the chicken erythroid AE1 anion exchanger recognize multiple polypeptides ranging in size from approximately 95 to 112 kDa in chicken kidney. To determine the origin of this diversity, we have cloned and characterized the kidney AE1 anion exchangers. These studies have shown that the kidney AE1 polypeptides are encoded by at least three transcripts, AE1-3, AE1-4, and AE1-5, which differ from the erythroid AE1-1 and AE1-2 transcripts in the sequences present at their 5'-ends. The AE1-3 and AE1-5 transcripts encode predicted

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Adler, P. N., C. Vinson, W. J. Park, S. Conover, and L. Klein. "Molecular structure of frizzled, a Drosophila tissue polarity gene." Genetics 126, no. 2 (1990): 401–16. http://dx.doi.org/10.1093/genetics/126.2.401.

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Abstract The function of the frizzled (fz) locus is required to coordinate the cytoskeletons of pupal epidermal cells so that a parallel array of cuticular hairs and bristles is produced. We report here the molecular cloning and characterization of the fz locus. The locus is very large. Mutations that inactivate the gene are spread over 100 kb of genomic DNA. The major mRNA product of the gene is a 4-kb RNA that is encoded by 5 exons spread over more than 90 kb of genomic DNA. Conceptual translation of this mRNA indicates that it encodes an integral membrane protein that is likely to contain b

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Laughon, Allen, William Howell, and Matthew P. Scott. "The interaction of proteins encoded by Drosophila homeotic and segmentation genes with specific DNA sequences." Development 104, Supplement (1988): 75–83. http://dx.doi.org/10.1242/dev.104.supplement.75.

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The ANT-C gene cluster is part of a network of genes that govern pattern formation in the development of Drosophila. The ANT-C genes encode proteins that contain a conserved 60 amino acid sequence, the homeodomain. Here we show that the homeodomains encoded by two of the ANT-C loci confer sequencespecific DNA-binding activity. The DNA sequence specificities of the Dfd and ftz homeodomains appear to overlap completely in vitro, indicating that differences in regulatory specificity among ANT-C and BX-C proteins (assuming that differences exist) must be a consequence of the nonconserved protein s

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Oram, Diana Marra, Ana Avdalovic, and Randall K. Holmes. "Analysis of Genes That Encode DtxR-Like Transcriptional Regulators in Pathogenic and Saprophytic Corynebacterial Species." Infection and Immunity 72, no. 4 (2004): 1885–95. http://dx.doi.org/10.1128/iai.72.4.1885-1895.2004.

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ABSTRACT Metal-dependent transcriptional regulators of the diphtheria toxin repressor (DtxR) family have been identified in a wide variety of bacterial genera, where they control gene expression in response to one of two metal ions, Fe2+ or Mn2+. DtxR of Corynebacterium diphtheriae is the best characterized of these important metal-dependent regulators. The genus Corynebacterium includes many phenotypically diverse species, and the prevalence of DtxR-like regulators within the genus is unknown. We assayed chromosomal DNA from 42 different corynebacterial isolates, representing 33 different spe

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Hanley-Bowdoin, L., E. M. Orozco, and N. H. Chua. "In vitro synthesis and processing of a maize chloroplast transcript encoded by the ribulose 1,5-bisphosphate carboxylase large subunit gene." Molecular and Cellular Biology 5, no. 10 (1985): 2733–45. http://dx.doi.org/10.1128/mcb.5.10.2733-2745.1985.

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The large subunit gene (rbcL) of ribulose 1,5-bisphosphate carboxylase was transcribed in vitro by using maize and pea chloroplast extracts and a cloned plastid DNA template containing 172 base pairs (bp) of the maize rbcL protein-coding region and 791 bp of upstream sequences. Three major in vitro RNA species were synthesized which correspond to in vivo maize rbcL RNAs with 5' termini positioned 300, 100 to 105, and 63 nucleotides upstream of the protein-coding region. A deletion of 109 bp, including the "-300" 5' end (the 5' end at position -300), depressed all rbcL transcription in vitro. A

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Hanley-Bowdoin, L., E. M. Orozco, and N. H. Chua. "In vitro synthesis and processing of a maize chloroplast transcript encoded by the ribulose 1,5-bisphosphate carboxylase large subunit gene." Molecular and Cellular Biology 5, no. 10 (1985): 2733–45. http://dx.doi.org/10.1128/mcb.5.10.2733.

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The large subunit gene (rbcL) of ribulose 1,5-bisphosphate carboxylase was transcribed in vitro by using maize and pea chloroplast extracts and a cloned plastid DNA template containing 172 base pairs (bp) of the maize rbcL protein-coding region and 791 bp of upstream sequences. Three major in vitro RNA species were synthesized which correspond to in vivo maize rbcL RNAs with 5' termini positioned 300, 100 to 105, and 63 nucleotides upstream of the protein-coding region. A deletion of 109 bp, including the "-300" 5' end (the 5' end at position -300), depressed all rbcL transcription in vitro. A

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Monahan, Emily, and Kenji Shimada. "Computer-aided navigation for arthroscopic hip surgery using encoder linkages for position tracking." International Journal of Medical Robotics and Computer Assisted Surgery 2, no. 3 (2006): 271–78. http://dx.doi.org/10.1002/rcs.100.

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Udaya Mohanan, Kannan, Chang-Hyun Kim, Seyed Mehdi Sattari-Esfahlan, Eou-Sik Cho, and Ioannis Kymissis. "Revealing Dual Functionality of Graphene Memristor Circuit for Advanced Neuromorphic Computing." ECS Meeting Abstracts MA2025-01, no. 63 (2025): 3064. https://doi.org/10.1149/ma2025-01633064mtgabs.

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Neuromorphic computing [1], inspired by the energy-efficient and parallelized architecture of the human brain, represents a paradigm shift in computing. This approach not only drives innovative hardware designs but also inspires novel network architectures like spiking neural networks (SNNs), which process information as discrete spike events. However, scalability in neuromorphic systems is constrained by the large hardware footprint. Realizing multimodal functionality using the same set of hardware primitives can offer a promising solution to these limitations. In this work, we present a dual

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Subhash, Patel *. Abhishek Vaghela Bhavin Gajjar. "DESIGN OF PHASE LOCKED LOOP." INTERNATIONAL JOURNAL OF ENGINEERING SCIENCES & RESEARCH TECHNOLOGY 6, no. 5 (2017): 312–20. https://doi.org/10.5281/zenodo.573512.

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In this work, we have designed CDR-PLL for 1GHz frequency. The design is carried out in the 180nm CMOS technology. We have use Hogge phase detector with the Kim-Lee delay cell based VCO. The designed CDR-PLL is tested by applying the 8B-10B encoded data and the simulation results are represented. The obtained results show that the clock is recovered successfully.

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Kojima, Asato, Atsushi Yasuda, Hideki Asanuma, et al. "Stable High-Producer Cell Clone Expressing Virus-Like Particles of the Japanese Encephalitis Virus E Protein for a Second-Generation Subunit Vaccine." Journal of Virology 77, no. 16 (2003): 8745–55. http://dx.doi.org/10.1128/jvi.77.16.8745-8755.2003.

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ABSTRACT We produced and characterized a cell clone (J12#26 cells) that stably expresses Japanese encephalitis virus (JEV) cDNA, J12, which encodes the viral signal peptide, premembrane (prM), and envelope (E) proteins (amino acid positions 105 to 794). Rabbit kidney-derived RK13 cells were transfected with a J12 expression plasmid, selected by resistance to marker antibiotics, and cloned by two cycles of a limiting-dilution method in the presence of antibiotics, a procedure that prevents the successful generation of E-producing cell clones. J12#26 cells secreted virus-like particles containin

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