Relevant bibliographies by topics / 16S rDNA sequence of S

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  1. Journal articles
  2. Dissertations / Theses
  3. Book chapters
  4. Conference papers
  5. Reports

Academic literature on the topic '16S rDNA sequence of S'

Author: Grafiati
Published: 3 June 2025
Last updated: 31 July 2025

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Journal articles on the topic "16S rDNA sequence of S"

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Tajbakhsh, Mercedeh, Babak Noory Nayer, Kamyar Motavaze, et al. "Phylogenetic relationship of Salmonella enterica strains in Tehran, Iran, using 16S rRNA and gyrB gene sequences." Journal of Infection in Developing Countries 5, no. 06 (2011): 465–72. http://dx.doi.org/10.3855/jidc.1504.

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Introduction: We assessed whether 16S rDNA and gyrB gene sequences, alone or combined, were suitable for determining the phylogenetic relationship among Salmonella enterica strains isolated from Tehran, Iran. Patients over five years of age enrolled in an acute diarrheal surveillance project in Tehran province between May 2004 and October 2006 were selected as our study group. Methodology: 16S ribosomal DNA (rDNA) and gyrB genes from 40 Salmonella isolates obtained from patients with acute diarrhea were sequenced and the data was used to generate phylogenetic trees that facilitated isolate com
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Rome, Sophie, Jean-Claude Cleyet-Marel, Luis A. Materon, Philippe Normand, and Brigitte Brunel. "Rapid identification of Medicago nodulating strains by using two oligonucleotide probes complementary to 16S rDNA sequences." Canadian Journal of Microbiology 43, no. 9 (1997): 854–61. http://dx.doi.org/10.1139/m97-124.

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Symbiotic bacteria associated with the Medicago genus are separated into two closely related species named Sinorhizobium meliloti and Sinorhizobium medicae. To discriminate rapidly between these two bacterial species, two 15-base DNA probes, 16Smfs and 16Smed, were designed from the alignment of 16S rDNA sequences to differentiate S. meliloti from S. medicae. Their specificities were evaluated by dot-blot hybridization experiments on 25 reference strains representing 13 species of Rhizobium and Sinorhizobium, and by comparison with all 16S rDNA sequences available in the GenBank data base. No
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Valiunas, D., R. Jomantiene, A. Ivanauskas, et al. "First Report of a New Phytoplasma Subgroup, 16SrIII-T, Associated with Decline Disease Affecting Sweet and Sour Cherry Trees in Lithuania." Plant Disease 93, no. 5 (2009): 550. http://dx.doi.org/10.1094/pdis-93-5-0550b.

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During July 2007, sweet (Prunus avium) and sour cherry (P. cerasus) trees exhibiting disease symptoms suggestive of possible phytoplasma infection were observed in a large orchard in the Kaunas Region of Lithuania. Samples of leaf tissue were collected from 13 sweet cherry trees that were affected by a decline disease (designated cherry decline, ChD) characterized by symptoms that included leaf reddening and premature leaf drop and two sour cherry trees exhibiting proliferation of branches and nonseasonal flowering. To assess the diseased trees for phytoplasma infection, DNA was extracted with
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Nogales, Balbina, Edward R. B. Moore, Enrique Llobet-Brossa, Ramon Rossello-Mora, Rudolf Amann, and Kenneth N. Timmis. "Combined Use of 16S Ribosomal DNA and 16S rRNA To Study the Bacterial Community of Polychlorinated Biphenyl-Polluted Soil." Applied and Environmental Microbiology 67, no. 4 (2001): 1874–84. http://dx.doi.org/10.1128/aem.67.4.1874-1884.2001.

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ABSTRACT The bacterial diversity assessed from clone libraries prepared from rRNA (two libraries) and ribosomal DNA (rDNA) (one library) from polychlorinated biphenyl (PCB)-polluted soil has been analyzed. A good correspondence of the community composition found in the two types of library was observed. Nearly 29% of the cloned sequences in the rDNA library were identical to sequences in the rRNA libraries. More than 60% of the total cloned sequence types analyzed were grouped in phylogenetic groups (a clone group with sequence similarity higher than 97% [98% for Burkholderia andPseudomonas-ty
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Deng, Cheng Xun, Mei Yue, Ling Wang, and Yu Hui Li. "Molecular Identification of a Strain Acidithiobacillus Ferrooxidans and its Biological Characteristics." Advanced Materials Research 402 (November 2011): 3–6. http://dx.doi.org/10.4028/www.scientific.net/amr.402.3.

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A strain of Acidithiobacillus ferrooxidans designated S t1 was isolated and identified from the acid mine drainage of Tianmashan Coal Mine, Tongling county, Anhui province. Its morphological, physiological and biochemical characters, growth conditions of pH value and temperature, 16S rDNA sequence and the phylogenetic tree was studied. Results showed that the bacteria strains from different sites have divergence at the curve of pH and Eh values during the enriching culture. The isolated strain S t1 grew in a pH rang from 2.0 to 3.0 and temperature 25 to 35°C with over 98％similarity toAcidithio
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Texeira, D. C., J. Ayres, E. W. Kitajima, et al. "First Report of a Huanglongbing-Like Disease of Citrus in Sao Paulo State, Brazil and Association of a New Liberibacter Species, “Candidatus Liberibacter americanus”, with the Disease." Plant Disease 89, no. 1 (2005): 107. http://dx.doi.org/10.1094/pd-89-0107a.

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Huanglongbing (HLB) (ex-greening) is one of the most serious diseases of citrus. The causal agent is a noncultured, sieve tube-restricted α-proteobacterium, “Candidatus Liberibacter africanus” in Africa and “Candidatus Liberibacter asiaticus” in Asia (2). The disease has never been reported from the American continent. However, Diaphorina citri, the Asian psyllid vector of HLB, is found in South, Central, and North America (Florida and Texas). Early in 2004, leaf and fruit symptoms resembling those of HLB were observed in several sweet orange orchards near the city of Araraquara, Sao Paulo Sta
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Layton, A. C., P. N. Karanth, C. A. Lajoie, et al. "Quantification of Hyphomicrobium Populations in Activated Sludge from an Industrial Wastewater Treatment System as Determined by 16S rRNA Analysis." Applied and Environmental Microbiology 66, no. 3 (2000): 1167–74. http://dx.doi.org/10.1128/aem.66.3.1167-1174.2000.

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ABSTRACT The bacterial community structure of the activated sludge from a 25 million-gal-per-day industrial wastewater treatment plant was investigated using rRNA analysis. 16S ribosomal DNA (rDNA) libraries were created from three sludge samples taken on different dates. Partial rRNA gene sequences were obtained for 46 rDNA clones, and nearly complete 16S rRNA sequences were obtained for 18 clones. Seventeen of these clones were members of the beta subdivision, and their sequences showed high homology to sequences of known bacterial species as well as published 16S rDNA sequences from other a
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Gomes, Eliane Aparecida, Sílvia Neto Jardim, Claudia Teixeira Guimarães, Isabel Regina Prazeres de Souza, and Elizabeth de Oliveira. "Genetic variability of Brazilian phytoplasma and spiroplasma isolated from maize plants." Pesquisa Agropecuária Brasileira 39, no. 1 (2004): 61–65. http://dx.doi.org/10.1590/s0100-204x2004000100009.

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The objective of this work was to characterize the genetic variability of phytoplasma and Spiroplasma kunkelii isolated from maize plants showing symptoms of stunt collected from different Brazilian geographic regions. A DNA fragment of 500 base pairs (bp) was amplified from the spiralin gene in S. kunkelii and one fragment of 1,200 bp was generated from 16S rDNA gene in phytoplasma. The partial sequences of the spiralin gene showed similarity of 98% among the isolates of S. kunkelii analyzed. These sequences were compared with the sequence of the spiralin gene from other Spiroplasma species d
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Ma, Xiping, Xianzhu Li, Wanlong Li, Di Wang, Chengbin Xu, and Xuelian Meng. "Identification and characterization of a cold-adapted and halotolerant nitrobenzene-degrading bacterium." RSC Advances 5, no. 98 (2015): 80276–82. http://dx.doi.org/10.1039/c5ra14280f.

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Coombs, Justin T., and Christopher M. M. Franco. "Isolation and Identification of Actinobacteria from Surface-Sterilized Wheat Roots." Applied and Environmental Microbiology 69, no. 9 (2003): 5603–8. http://dx.doi.org/10.1128/aem.69.9.5603-5608.2003.

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ABSTRACT This is the first report of filamentous actinobacteria isolated from surface-sterilized root tissues of healthy wheat plants (Triticum aestivum L.). Wheat roots from a range of sites across South Australia were used as the source material for the isolation of the endophytic actinobacteria. Roots were surface-sterilized by using ethanol and sodium hypochlorite prior to the isolation of the actinobacteria. Forty-nine of these isolates were identified by using 16S ribosomal DNA (rDNA) sequencing and found to belong to a small group of actinobacterial genera including Streptomyces, Microb
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Dissertations / Theses on the topic "16S rDNA sequence of S"

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Lesack, Kyle. "Nomenclature errors in public 16s rDNA gene databases : strategies to improve the accuracy of sequence annotations." Thesis, University of British Columbia, 2017. http://hdl.handle.net/2429/62456.

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Obtaining an accurate representation of the microorganisms present in microbial ecosystems presents a considerable challenge. Microbial communities are typically highly complex, and may consist of a variety of differentially abundant bacteria, archaea, and microbial eukaryotes. The targeted sequencing of the 16S rDNA gene has become a standard method for profiling membership and biodiversity of microbial communities, as the bacterial and archaeal community members may be profiled directly, without any intermediate culturing steps. These studies rely upon specialized 16S rDNA gene reference dat
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Oberreuter, Helene. "FT-IR spectroscopic identification and infraspecific diversity of coryneform bacteria in relation to 16S rDNA sequence analysis." [S.l. : s.n.], 2001. http://deposit.ddb.de/cgi-bin/dokserv?idn=962146374.

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Floresta, Fernanda Arruda. "Análise de região codificadora de rRNA de Lactobacillus delbrueckii UFV H2b20: Filogenia e presença de seqüência de inserção putativa." Universidade Federal de Viçosa, 2003. http://locus.ufv.br/handle/123456789/5295.

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Made available in DSpace on 2015-03-26T13:51:43Z (GMT). No. of bitstreams: 1 texto completo.pdf: 248917 bytes, checksum: 84bc05c660ca867229222e12c0fa08ec (MD5) Previous issue date: 2003-03-31<br>Fundação de Amparo a Pesquisa do Estado de Minas Gerais<br>Phylogenetic analysis of Lactobacillus UFV H2b20 based on the 16S rDNA sequence positions this isolate among the Lactobacillus delbrueckii subspecies. It confirms the classification by DNA/DNA hybridization. Comparisons of the substituted bases along the 16S rDNA sequence show that most are probably caused by 5-methylcytosine deamination that
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Kock, Martha Magdalena. "Characterization and identification of some indigenous Rhizobia using 16S rDNA sequence analysis." Diss., 1999. http://hdl.handle.net/2263/30155.

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ENGLISH : The use of different characteristics (the polyphasic approach) to describe bacterial taxa is a prerequisite for a stable classification. The taxonomy of root- and stem-nodulating rhizobia is in a state of transition. As more legumes are studied, new species and genera of rhizobia are described. It is important to study the indigenous South African rhizobia, as without them a complete rhizobial taxonomy is not possible. Furthermore, strains with superior nitrogen fixation abilities may be discovered. Indigenous strains better adapted to the harsh South African environment are possible
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Oberreuter, Helene [Verfasser]. "FT-IR spectroscopic identification and infraspecific diversity of coryneform bacteria in relation to 16S rDNA sequence analysis / Helene Oberreuter." 2001. http://d-nb.info/962146374/34.

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Wei, Yu-Fang, and 魏郁芳. "Construction of a Sequence Database of 16S-23S rDNA Spacer (ITS) of Nonfermentative Gram-Negative Bacilli and Identification of Acinetobacter calcoaceticus-Acinetobacter baumannii (Acb) Complex by ITS Sequence Analysis." Thesis, 2003. http://ndltd.ncl.edu.tw/handle/61532068069944098440.

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碩士<br>國立成功大學<br>醫學工程研究所<br>91<br>Members of the genus Acinetobacter and other nonfermentative gram-negative bacteria are clinically important pathogens. However, clinical laboratories still lack simple methods that allow accurate identification of these species. For example, species of the Acinetobacter calcoaceticus— Acinetobacter baumannii complex (Acb complex) that includes Acinetobacter calcoaceticus (genospecies 1), A. baumannii (genospecies 2), unnamed genospecies 3 and 13TU are difficult to be differentiated. In fact, a complete discrimination between these species is possible only by D
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Chia-Wen, Cheng, and 鄭嘉雯. "Using of conjugation method, enterotoxin gene detection and 16S-23S rDNA ITS sequence analysis to study the phylogenetic relationship between B. cereus and B. thuringiensis." Thesis, 2001. http://ndltd.ncl.edu.tw/handle/21559640910137020802.

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碩士<br>國立中興大學<br>食品科學系<br>89<br>In this research, plasmid pBTIAb was the marker in mating experiment, while strain BT16Te was the donor. The results showed that plasmid was conjugally transferable between B. cereus and B. thuringiensis. B. cereus is food-poisoning for it''s production of hemolysin BL(HBL) and non-hemolytic enterotoxin (NHE). This research adopted primer sets hblA1/hblA2, nheB1500S/nheB2269A, and nheC2820S/nheC3401A, as well as, from this Lab, sets of L2F/L2b, L1b/L1F and nheaF/nheaR. Via polymerase chain reaction (PCR), 79 strains of B. thuringiensis from diffe
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Book chapters on the topic "16S rDNA sequence of S"

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Huo, Da, Yang Luo, Yunsi Nie, Jing Sun, Yanan Wang, and Zhiyi Qiao. "The Distribution Characteristics of Microcystis novacekii Based on 16S rDNA Sequence." In Lecture Notes in Electrical Engineering. Springer Berlin Heidelberg, 2015. http://dx.doi.org/10.1007/978-3-662-46318-5_4.

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Johansson, Karl-Erik, Malin U. K. Heldtander, and Bertil Pettersson. "Characterization of Mycoplasmas by PCR and Sequence Analysis with Universal 16S rDNA Primers." In Mycoplasma Protocols. Humana Press, 1998. http://dx.doi.org/10.1385/0-89603-525-5:145.

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Dabert, M., J. Dabert, and K. Siuda. "Species validity of the soft-tick Argas polonicus (Acari: Argasidae) based on 16S rDNA sequence analysis." In Ecology and Evolution of the Acari. Springer Netherlands, 1999. http://dx.doi.org/10.1007/978-94-017-1343-6_58.

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Manichanh, Chaysavanh, Charles E. Chapple, Lionel Frangeul, Karine Gloux, Roderic Guigo, and Joel Dore. "A Comparison of Random Sequence Reads Versus 16S rDNA Sequences for Estimating the Biodiversity of a Metagenomic Sample." In Handbook of Molecular Microbial Ecology I. John Wiley & Sons, Inc., 2011. http://dx.doi.org/10.1002/9781118010518.ch21.

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WETZER, REGINA, JOEL MARTIN, and SARAH BOYCE. "Evolutionary Origin of the Gall Crabs (Family Cryptochiridae) Based on 16S rDNA Sequence Data." In Decapod Crustacean Phylogenetics. CRC Press, 2009. http://dx.doi.org/10.1201/9781420092592-c24.

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Conference papers on the topic "16S rDNA sequence of S"

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Horn, Joanne, Celena Carrillo, and Victoria Dias. "Comparison of the Microbial Community Composition at Yucca Mountain and Laboratory Test Nuclear Repository Environments." In CORROSION 2003. NACE International, 2003. https://doi.org/10.5006/c2003-03556.

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Abstract The microbiological community structure within a proposed nuclear waste repository at Yucca Mountain (YM), NV was determined. Microbial growth from collected rock was detected using simulated ground water as a growth medium, with or without amendment of a carbon source. Grown isolates were identified by 16S ribosomal DNA (rDNA) sequence analysis. A more complete compositional analysis of the microbial community located at the proposed nuclear waste repository site was performed using environmental DNA isolation and subsequent identification of amplified 16S rDNA genes. Concurrently, a
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Bartling, Craig, Angela Minard-Smith, Kate H. Kucharzyk, Jennifer Busch-Harris, and Larry Mullins. "Interpreting Omic Data for Microbially Influenced Corrosion: Lessons from a Case Study Involving a Seawater Injection System." In CORROSION 2017. NACE International, 2017. https://doi.org/10.5006/c2017-09445.

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Abstract Microbiologically influenced corrosion (MIC) is a significant source of pitting corrosion affecting oil and gas pipelines, wells, and a variety of surface facilities. Understanding of MIC is greatly enhanced through DNA and protein sequencing technologies. This paper highlights the need to understand the methods used to generate the data, the data quality, and the limitations associated with data interpretation through a case study involving the metagenomics and proteomic analysis of pig envelope debris and seawater samples from various locations within a seawater injection system sus
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Liu Jun-ang, Pan Huaping, and Gou Zhihui. "Notice of Retraction: Screening and 16S rDNA sequence analysis of potassium bacterial strain from the Camellia oleifera rhizosphere environment." In 2010 2nd Conference on Environmental Science and Information Application Technology (ESIAT 2010). IEEE, 2010. http://dx.doi.org/10.1109/esiat.2010.5568886.

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Jebril, Nadia. "Cadmium Bioremediation by Brevibacillus spp: A Minireview." In 5th International Conference on Biomedical and Health Sciences. Cihan University-Erbil, 2024. http://dx.doi.org/10.24086/biohs2024/paper.1382.

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Abstract—The field of bioremediation technique has experienced a substantial method in the last years but still, the choice of biocandidate is an elusive problem. In addition, the growing number of metal sources is accompanied by an increasing need for efficient bioremediate tools. In the last period, changes in bacterial taxonomy based on 16S rDNA gene sequence analysis have been reflected in the classification scheme of genus Brevibacillus. This review covers the different microorganisms that have been used in cadmium bioremediation and some Brevibacillus spp. which have been isolated and th
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Teneva, Ivanka, Dzhemal Moten, Detelina Belkinova, Tsvetelina Mladenova, and Balik Dzhambazov. "TOXIC POTENTIAL OF ANABAENOPSIS ELENKINII (CYANOBACTERIA) ISOLATED FROM A BLOOM IN LAKE VAYA (BULGARIA)." In 23rd SGEM International Multidisciplinary Scientific GeoConference 2023. STEF92 Technology, 2023. http://dx.doi.org/10.5593/sgem2023/5.1/s20.36.

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Cyanobacteria are ancient photosynthetic organisms that under certain conditions (high temperature, eutrophication) can grow rapidly and form "cyanobacterial blooms". Very often, these blooms are accompanied by production of cyanotoxins, which in most cases are dangerous to the other organisms. Knowing the producers of cyanotoxins is of utmost importance, especially today when climate change has been shown to increase the frequency of toxic cyanobacterial blooms worldwide. The aim of the present study was to characterize the toxic potential of the cyanobacterium Anabaenopsis elenkinii V.V.Mill
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Prokhorova, E. E., and R. R. Usmanova. "GENETIC POLYMORPHISM OF SNAILS SUCCINEA PUTRIS (GASTROPODA, PULMONATA)." In V International Scientific Conference CONCEPTUAL AND APPLIED ASPECTS OF INVERTEBRATE SCIENTIFIC RESEARCH AND BIOLOGICAL EDUCATION. Tomsk State University Press, 2020. http://dx.doi.org/10.17223/978-5-94621-931-0-2020-33.

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Genotypic diversity of snails Succinea putris L. (Linnaeus, 1758) collected in the north-west of Russia and in the Republic of Belarus was analysed. Homology between the nucleotide sequences of snails from different population made up 100% by the nucleotide sequence of ITS1-5.8S-ITS2 region of rDNA. Genetic variability based on mitochondrial markers was insignificant. Average genetic distances between samples made up 0,009 for СOI gene loci and 0.008 for CytB gene loci. Was found ten haplotypes of the mitochondrial gene CytB and nine haplotypes of the mitochondrial gene СOI. Perhaps the geneti
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Júnior, Marcos De Paula, Thiago Augusto Da Costa Silva, Gustavo Augusto Lacorte, and Amanda Soriano Araújo Barezani. "BIODIVERSIDADE DAS COMUNIDADES MICROBIANAS DO SEDIMENTO DO LEITO DO RIO SÃO FRANCISCO NA SERRA DA CANASTRA EM MINAS GERAIS." In I Congresso Brasileiro de Biodiversidade Virtual. Revista Multidisciplinar de Educação e Meio Ambiente, 2021. http://dx.doi.org/10.51189/rema/1061.

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INTRODUÇÃO: Os ecossistemas de água doce sustentam uma enorme biodiversidade e fornecem bens e serviços ambientais de importância para as populações humanas. O uso do sequenciamento massivo de fragmentos amplificados de DNA derivados de amostras de ambientes fluviais poderiam ser usados para determinar a biodiversidade e composição das comunidades microbianas destes ambientes. Em ambientes aquáticos, os sedimentos se tornam um local ideal para o crescimento microbiano, uma vez que nesse ambiente os microrganismos podem se fixar e realizar seu metabolismo. As características dos sedimentos refl
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Siripornadulsil, Surasak, and Wilailak Siripornadulsil. "Characterization of Cadmium-Resistant Bacteria and Their Application for Cadmium Bioremediation." In ASME 2009 12th International Conference on Environmental Remediation and Radioactive Waste Management. ASMEDC, 2009. http://dx.doi.org/10.1115/icem2009-16072.

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On a global basis, trace-metal pollution is one of the most pervasive environmental problems. It is particularly difficult to prevent or clean up because the metals are toxic in their elemental form and cannot be decomposed. Bioremediation has been shown to be a powerful system for heavy metal pollution clean up and prevention. In this work, we characterized the cadmium (Cd)-resistant bacteria isolated from rice field soil downstream from zinc (Zn) mineralized area which the owners were contaminated at high level of cadmium content in their blood (&amp;gt;10 μgCd/g creatinine). We found that a
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Reports on the topic "16S rDNA sequence of S"

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Bercovier, Herve, and Paul Frelier. Pathogenic Streptococcus in Tilapia: Rapid Diagnosis, Epidemiology and Pathophysiology. United States Department of Agriculture, 1994. http://dx.doi.org/10.32747/1994.7568776.bard.

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Within the project "Pathogenic Streptococcus in Tilapia", gram positive cocci pathogens of fish in Israel and in the United States were characterized. We showed that Streptococcus shiloi, the name for an agent causing septicemic infection in fish, is a junior synonym of Streptococcus iniae and that Enterococcus seriolicida is a junior synonym of Lactococcus garvieae, a causative agent of septicemia and meningo-encephalitis in fish. Molecular epidemiology studies on these two pathogens, based on 16S rDNA sequences and ribotyping showed that although each country had specific clones, S. iniae or
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Gallego Sánchez, Gerardo J., Patricia Zapata, Oscar Castañeda, et al. Use of DNA sequences for identification of possible biotypes of the fruit borer Neoleucinodes elegantalis (Lepidoptera: Crambidae), an important pest of Andean solanaceous fruits. Centro Internacional de Agricultura Tropical (CIAT), 2015. http://dx.doi.org/10.21930/agrosavia.poster.2015.1.

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In Colombia, Venezuela, Ecuador, Brazil and Honduras, the tomato borer, Neoleucinodes elegantalis, is the most important fruit-related plague of the Solanaceae family. A suitable molecular characterization using a DNA barcoding system is necessary to clarify different issues inside the taxonomy of Neoleucinodes genus. Additionally, other DNA sequences used for molecular identification and phylogenetics studies, can be implemented to obtain a better understanding of the genetic variability across different animal groups and allows to acquire a enhanced description of the population s genetic va
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