Academic literature on the topic 'Acidophiles'

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Journal articles on the topic "Acidophiles"

1

Dopson, Mark, Craig Baker-Austin, P. Ram Koppineedi, and Philip L. Bond. "Growth in sulfidic mineral environments: metal resistance mechanisms in acidophilic micro-organisms." Microbiology 149, no. 8 (2003): 1959–70. http://dx.doi.org/10.1099/mic.0.26296-0.

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Acidophilic micro-organisms inhabit some of the most metal-rich environments known, including both natural and man-made ecosystems, and as such are ideal model systems for study of microbial metal resistance. Although metal resistance systems have been studied in neutrophilic micro-organisms, it is only in recent years that attention has been placed on metal resistance in acidophiles. The five metal resistance mechanisms identified in neutrophiles are also present in acidophiles, in some cases utilizing homologous proteins, but in many cases the degree of resistance is greater in acidophiles. This review summarizes the knowledge of acidophile metal resistance and presents preliminary in silico studies on a few known metal resistance systems in the sequenced acidophile genomes.
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2

Liu, Xing Yu, Bo Wei Chen, and Jian Kang Wen. "Distribution of Acidophiles around Zijinshan Bioheapleaching Plant: Dispersal or Not?" Advanced Materials Research 1073-1076 (December 2014): 110–13. http://dx.doi.org/10.4028/www.scientific.net/amr.1073-1076.110.

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The Zijinshan bioheapleaching plant started operating at the end of 2005. During four years of leaching operation, concern about migration of acidophiles from the heap into the nearby Ting river has arisen. A total of 44 soil samples, 49 water samples and 15 air samples were collected surround the heap at different spatial scales, and the quantitative distribution of acidophile around Zijinshan bioheap was studied. Chemical characteristics of the samples such as pH, copper content and iron content were analyzed. Real-time PCR assay was used to qualify acidophiles, included genus Acidithiobacillus, Leptospirillum, Ferroplasma and Sulfobacillus in all samples. The results showed that the four acidophiles displayed different biogeographic patterns. Geographic distance did not have a biogeographical effect on the experimental spatial scale for the genus Acidithiobacillus, Leptospirillum and Sulfobacillus. However, the geographic distance was a significant factor for genus Ferroplasma. The water soluble copper and iron concentrations of soil samples had crucial relevance for the existence of acidophiles. No significant variation was found among all the water samples regarding the concentation of acidophiles. The concentration of copper in the river met China National water quality II standard. These results indicated that: a) the dispersal of acidophiles from the heap may not be significant b) the adverse impact from the heap on the local environmental may not be significant.
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3

Zhang, Rui Yong, Sabrina Hedrich, and Axel Schippers. "Reduction of Iron(III) Ions at Elevated Pressure by Acidophilic Microorganisms." Solid State Phenomena 262 (August 2017): 88–92. http://dx.doi.org/10.4028/www.scientific.net/ssp.262.88.

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A composed mixed acidophilic, iron-oxidizing culture (FIGB) and a thermo-acidophilic enrichment culture (TK65) were used to evaluate microbial iron(III) reduction coupled to oxidation of reduced inorganic sulfur compounds (RISCs) under high pressure. Experiments were done in batch culture in high pressure vessels at 1 and 100 bar. Microbial abundance and activity were determined by measuring iron(II) concentration, direct cell counting, T-RFLP and quantitative real-time PCR. The data indicate that both cultures are able to reduce soluble iron(III) by oxidation of sulfur compounds under anaerobic conditions. At high pressure (100 bar) these acidophiles were capable of growing and microbial ferric iron reduction was only partially inhibited. These results indicate that acidophiles can be barotolerant and their activities are contributing to sulfur and iron cycling in anaerobic environments including deep ore deposits which is highly relevant for in situ leaching operations.
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4

Neira, Gonzalo, Diego Cortez, Joaquin Jil, and David S. Holmes. "AciDB 1.0: a database of acidophilic organisms, their genomic information and associated metadata." Bioinformatics 36, no. 19 (2020): 4970–71. http://dx.doi.org/10.1093/bioinformatics/btaa638.

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Abstract Motivation There are about 600 available genome sequences of acidophilic organisms (grow at a pH < 5) from the three domains of the Tree of Life. Information about acidophiles is scattered over many heterogeneous sites making it extraordinarily difficult to link physiological traits with genomic data. We were motivated to generate a curated, searchable database to address this problem. Results AciDB 1.0 is a curated database of sequenced acidophiles that enables researchers to execute complex queries linking genomic features to growth data, environmental descriptions and taxonomic information. Availability and implementation AciDB 1.0 is freely available online at: http://AciDB.cl. The source code is released under an MIT license at: https://gitlab.com/Hawkline451/acidb/.
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5

Angelov, Angel, Jörn Voss, and Wolfgang Liebl. "Characterization of Plasmid pPO1 from the HyperacidophilePicrophilus oshimae." Archaea 2011 (2011): 1–4. http://dx.doi.org/10.1155/2011/723604.

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Picrophilus oshimaeandPicrophilus torridusare free-living, moderately thermophilic and acidophilic organisms from the lineage ofEuryarchaeota. With a pH optimum of growth at pH 0.7 and the ability to even withstand molar concentrations of sulphuric acid, these organisms represent the most extreme acidophiles known. So far, nothing is known about plasmid biology in these hyperacidophiles. Also, there are no genetic tools available for this genus. We have mobilized the 7.6 Kbp plasmid fromP. oshimaeinE. coliby introducing origin-containing transposons and described the plasmid in terms of its nucleotide sequence, copy number in the native host, mode of replication, and transcriptional start sites of the encoded ORFs. Plasmid pPO1 may encode a restriction/modification system in addition to its replication functions. The information gained from the pPO1 plasmid may prove useful in developing a cloning system for this group of extreme acidophiles.
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6

Panyushkina, Anna, Daria Matyushkina, and Olga Pobeguts. "Understanding Stress Response to High-Arsenic Gold-Bearing Sulfide Concentrate in Extremely Metal-Resistant Acidophile Sulfobacillus thermotolerans." Microorganisms 8, no. 7 (2020): 1076. http://dx.doi.org/10.3390/microorganisms8071076.

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Biooxidation of gold-bearing arsenopyrite concentrates, using acidophilic microbial communities, is among the largest commercial biohydrometallurgical processes. However, molecular mechanisms of microbial responses to sulfide raw materials have not been widely studied. The goal of this research was to gain insight into the defense strategies of the acidophilic bacterium Sulfobacillus thermotolerans, which dominates microbial communities functioning in industrial biooxidation processes at >35 °C, against the toxic effect of the high-arsenic gold-bearing sulfide concentrate. In addition to extreme metal resistance, this acidophile proved to be one of the most As-tolerant microorganisms. Comparative proteomic analysis indicated that 30 out of 33 differentially expressed proteins were upregulated in response to the ore concentrate, while the synthesis level of the functional proteins required for cell survival was not negatively affected. Despite a high level of cellular metal(loid) accumulation, no specific metal(loid)-resistant systems were regulated. Instead, several proteins involved in the metabolic pathways and stress response, including MBL fold metallo-hydrolase, sulfide:quinone oxidoreductase, and GroEL chaperonin, may play crucial roles in resistance to the sulfide ore concentrate and arsenic, in particular. This study provides the first data on the microbial responses to sulfide ore concentrates and advances our understanding of defense mechanisms against toxic compounds in acidophiles.
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7

Liu, Yuanyuan, Hongying Yang, Xian Zhang, Yunhua Xiao, Xue Guo, and Xueduan Liu. "Genomic Analysis Unravels Reduced Inorganic Sulfur Compound Oxidation of Heterotrophic AcidophilicAcidicaldussp. Strain DX-1." BioMed Research International 2016 (2016): 1–8. http://dx.doi.org/10.1155/2016/8137012.

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Although reduced inorganic sulfur compound (RISC) oxidation in many chemolithoautotrophic sulfur oxidizers has been investigated in recent years, there is little information about RISC oxidation in heterotrophic acidophiles. In this study,Acidicaldussp. strain DX-1, a heterotrophic sulfur-oxidizing acidophile, was isolated. Its genome was sequenced and then used for comparative genomics. Furthermore, real-time quantitative PCR was performed to identify the expression of genes involved in the RISC oxidation. Gene encoding thiosulfate: quinone oxidoreductase was present inAcidicaldussp. strain DX-1, while no candidate genes with significant similarity to tetrathionate hydrolase were found. Additionally, there were genes encoding heterodisulfide reductase complex, which was proposed to play a crucial role in oxidizing cytoplasmic sulfur. Like many heterotrophic sulfur oxidizers,Acidicaldussp. strain DX-1 had no genes encoding enzymes essential for the direct oxidation of sulfite. An indirect oxidation of sulfite via adenosine-5′-phosphosulfate was proposed inAcidicaldusstrain DX-1. However, compared to other closely related bacteriaAcidiphilium cryptumandAcidiphilium multivorum, which harbored the genes encoding Sox system, almost all of these genes were not detected inAcidicaldussp. strain DX-1. This study might provide some references for the future study of RISC oxidation in heterotrophic sulfur-oxidizing acidophiles.
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8

Norris, P. R., N. P. Burton, and N. A. M. Foulis. "Acidophiles in bioreactor mineral processing." Extremophiles 4, no. 2 (2000): 0071–76. http://dx.doi.org/10.1007/s007920050139.

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9

Chen, Bo Wei, Jian Kang Wen, and Guo Cheng Yao. "Acidophiles and its Use in Mineral Biomining with Emphasis on China." Advanced Materials Research 926-930 (May 2014): 4201–4. http://dx.doi.org/10.4028/www.scientific.net/amr.926-930.4201.

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Acidophiles have been widely used in heap and dump bioleaching of secondary copper sulfide ores and biooxidation of refractory gold ores. 22 genera of acidophiles have been found in biomining environments. This paper gives a preliminary introduction to the application of mineral biomining in China. Challenges and technical trends for heap bioleaching of primary copper sulfide ores, purification of bioleaching solution of polymetallic sulfide ores and biooxidation of carbonaceous refractory gold ores are also recommended.
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10

Ñancucheo, Ivan, and D. Barrie Johnson. "Production of Glycolic Acid by Chemolithotrophic Iron- and Sulfur-Oxidizing Bacteria and Its Role in Delineating and Sustaining Acidophilic Sulfide Mineral-Oxidizing Consortia." Applied and Environmental Microbiology 76, no. 2 (2009): 461–67. http://dx.doi.org/10.1128/aem.01832-09.

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ABSTRACT Glycolic acid was detected as an exudate in actively growing cultures of three chemolithotrophic acidophiles that are important in biomining operations, Leptospirillum ferriphilum, Acidithiobacillus (At.) ferrooxidans, and At. caldus. Although similar concentrations of glycolic acid were found in all cases, the concentrations corresponded to ca. 24% of the total dissolved organic carbon (DOC) in cultures of L. ferriphilum but only ca. 5% of the total DOC in cultures of the two Acidithiobacillus spp. Rapid acidification (to pH 1.0) of the culture medium of At. caldus resulted in a large increase in the level of DOC, although the concentration of glycolic acid did not change in proportion. The archaeon Ferroplasma acidiphilum grew in the cell-free spent medium of At. caldus; glycolic acid was not metabolized, although other unidentified compounds in the DOC pool were metabolized. Glycolic acid exhibited levels of toxicity with 21 strains of acidophiles screened similar to those of acetic acid. The most sensitive species were chemolithotrophs (L. ferriphilum and At. ferrivorans), while the most tolerant species were chemoorganotrophs (Acidocella, Acidobacterium, and Ferroplasma species), and the ability to metabolize glycolic acid appeared to be restricted (among acidophiles) to Firmicutes (chiefly Sulfobacillus spp.). Results of this study help explain why Sulfobacillus spp. rather than other acidophiles are the main organic carbon-degrading bacteria in continuously fed stirred tanks used to bioprocess sulfide mineral concentrates and also why temporary cessation of pH control in these systems, resulting in rapid acidification, often results in a plume of the archaeon Ferroplasma.
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