Academic literature on the topic 'Alaudidae'

To gain a better understanding of mitogenome features and phylogenetic relationships in Sylvioidea, a superfamily of Passerida, suborder Passeri, Passeriformes, the whole mitogenome of Alaudala cheleensis Swinhoe (Alaudidae) was sequenced, a comparative mitogenomic analysis of 18 Sylvioidea species was carried out, and finally, a phylogeny was reconstructed based on the mitochondrial dataset. Gene order of the A. cheleensis mitogenome was similar to that of other Sylvioidea species, including the gene rearrangement of cytb-trnT-CR1-trnP-nad6-trnE-remnant CR2-trnF-rrnS. There was slightly higher A+T content than that of G+C in the mitogenome, with an obvious C skew. The ATG codon initiated all protein-coding genes, while six terminating codons were used. The secondary structure of rrnS contained three domains and 47 helices, whereas rrnL included six domains and 60 helices. All tRNAs could be folded into a classic clover-leaf secondary structure except for trnS (AGY). The CR1 could be divided into three domains, including several conserved boxes (C-string, F, E, D, C and B-box, Bird similarity box, CSB1). Comparative analyses within Sylvioidea mitogenomes showed that most mitochondrial features were consistent with that of the A. cheleensis mitogenome. The basal position of the Alaudidae within the Sylvioidea in our phylogenetic analyses is consistent with other recent studies.

Includes bibliographical references.
The larks are a group of dull coloured birds that are conservative in plumage coloration and pattern due to the requirements for camouflage in open habitats. Because many species inhabit structurally similar habitats the group is also characterised by a great deal of morphological convergence. Variation in plumage and morphology is frequently as great within species as it is between species, leading to many inconsistent and controversial taxonomic treatments and classifications at an intra- and inter-generic level, and when defining specific and sub-specific boundaries. The advent of genetic techniques and success at applying these to species complexes in southern Africa suggested that a molecular phylogeny of the family would elucidate relationships that could not be determined via traditional taxonomic practices. In this study 2009 nucleotides of two mitochondrial DNA genes, cytochrome b and 16S rRNA (Chapter 2), and 2872 nucleotides of the nuclear exon RAG-l (Chapter 3) were used to generate a robust phylogeny of the family Alaudidae. The former analysis included 55 species and the latter 25. These data were also combined to construct a combined evidence phylogeny (Chapter 7). Within the family, several genera recognised by more traditional taxonomies are polyphyletic, including Ammomanes, Eremalauda .and Certhilauda. Two other genera, Calandrella and Mirafra, are best treated as multiple genera (Chapter 2). The sampled Alaudidae can be divided into three main radiations, the ammomanid larks, mirafrid larks and alaudid larks (Chapter 3). Within the ammomanid larks, there is strong support for: (1) a southern African' radiation comprising Chersomanes, the Long-billed Lark complex (Certhilauda) and Ammomanes (Ammomanopsis) grayi ,with Alaemon allied to this radiation; and (2) a .Saharo-Sindian radiation comprising Ramphocoris c1otbey, Ammomanes cinc(urus, and A. deserti sister to the Afro-Sindian sparrowlark Eremopterix clade. The Madagascan endemic Mirafra hova was a surprise basal member of Eremopterix.

The Raso lark is a Critically Endangered bird endemic to the islet of Raso, Cape Verde. This thesis investigates two phenomena that particularly put the species at risk: its extreme fluctuations in population size, and its potentially very low genetic diversity arising from small population size and severe past population contraction. More specifically, two chapters estimate year-to-year survival and explore the factors - environmental and individual - that influence it, while two other chapters examine the lark’s genetic characteristics compared to its two continental closest relatives, including phylogenetic relationships and levels of genetic diversity. The conclusion of the thesis then uses these results to make recommendations for the conservation of the Raso lark. Each of the data chapters is summarized below: Chapter 3 estimates adult survival in the Raso lark and tests whether it could be linked to two population phenomena observed in the field: a highly variable population size and a male-biased sex ratio in certain years. Using a dataset spanning 10 years, I estimated survival for both sexes to fluctuate between 0.76 and 0.94 over this period. This is much higher than the survival rate of its closest relative, the skylark. I also found strong evidence for survival fluctuating over time and differing between males and females (with males having higher survival until 2011, at which point the trend inverted), which could play a role in the aforementioned population size fluctuations and male-biased sex ratio, respectively. Chapter 4 aims at understanding which factors shape survival in the Raso lark. Two types of variables were considered: year-dependent (rainfall, population size, population mean clutch size) and individual-dependent (age, body size characters, size ratio with mate, Ase18 genotype). Amongst the year-dependent variables, only sameyear rainfall impacted survival, with a 13% decrease in survival in the wettest year compared to the driest year, making it the most likely explanation for the inter-annual fluctuations in survival found in Chapter 3. Results also hint at some of the individual factors - morphological measurements and Ase18 genotype - influencing survival. The picture that emerges is that of a species whose life history strategy is to invest heavily in maintenance and survival, but less into fecundity, which stands in sharp contrast with the mainland-dwelling skylark. This is consistent with the theory that island birds generally have slower life history strategies than their continental counterparts. Chapter 5 determines the precise relationship between members of the Alauda clade, resolving a node on the phylogenetic tree of all larks that the study by Alström et al. (2013) was unable to resolve. My RADseq results indicate that the Raso lark and the skylark are sister species, and that the Oriental lark is likely to be a subpopulation, or maybe a subspecies, of the skylark. Chapter 6 compares the population genetics of the Raso lark with those of the skylark. In particular, it estimates the genetic diversity of the Raso lark and investigates the drivers behind it. I found unexpectedly high nucleotide diversity in the Raso lark, and explain this by showing that the population contraction that the species underwent was recent enough for most of the diversity to still be present. Moreover, 16% of the Raso lark genome has levels of heterozygosity on average 6.6 times higher than elsewhere on the genome, likely due to suppressed recombination and the existence of a neo-sex chromosome in larks. Despite this, I found high levels of relatedness and of linkage disequilibrium in the Raso lark, two clear genetic signs that it underwent a severe population contraction several centuries ago.

Thesis (M.Sc. (Zoology)) -- University of Limpopo, 2012
Sparrow-larks form a relatively small genus in the family Alaudidae and comprise only seven species distributed widely throughout Africa and parts of the Eurasian landmass. Sparrow-larks are unique amongst larks in that they are sexually dichromatic and exhibit biparental care. The chestnut-backed sparrow-lark Eremopterix leucotis is endemic to Africa with five subspecies recognized based on differences in plumage colouration. The five subspecies are distributed throughout the arid to semi-arid savannas of Africa with two subspecies (E. l. hoeschi and E. l. smithi) occurring in southern Africa. Despite their widespread occurrence and its interest for research on the evolution of characteristics in the family (e.g. being sexually dichromatic and exhibiting biparental care), very little is known of the biology and ecology of the Eremopterix larks. The chestnut-backed sparrow-lark is no exception and most of what we know of the species is based on incidental observations from a few nests. In an attempt to improve our knowledge of this interesting group of species, it was decided to study various aspects of the breeding biology and ecology, moult, vocalizations and geographical variation in the chestnutbacked sparrow-lark. The breeding biology of the chestnut-backed sparrow-lark was studied at Al3 farm (De Loskop) near Mogwadi in the Limpopo Province of South Africa from January 2008 to December 2010. Data collected during the study included: breeding seasonality, egg and clutch characteristics, duration of the incubation and nestling periods, nest-site characteristics, the roles and relative contribution of the sexes in the breeding cycle, nestling development, diet and nestling provisioning rate, and breeding success. Chestnut-backed sparrow-larks bred mostly during the dry season, which is from April to September in the study area. Nevertheless, the results revealed that breeding is bimodal with a main peak in breeding activity in late summer and autumn (March to April) and a second smaller peak in spring (September to October). The species showed geographical variation in clutch size with a mean of 1.88 eggs recorded in the study area as opposed to 1.00 recorded in the northern parts of its range. Egg dimensions compared well with measurements obtained from the Nest Record Card Scheme of the Animal Demography Unit, University of Cape Town, South Africa. The mean incubation period of 10.33 days recorded in this study compares favourably with that of other Eremopterix species viii (8–10 days), a genus with some of the shortest incubation periods amongst larks. The mean nestling period of 9.2 days (range: 8–10) in the study area was significantly less than the 10–12 days reported for populations in the northern range of the species, but it compares well with those of other sparrow-larks. Nest site characteristics, which were quantified within a 1 m2 quadrant with the nest as the centre, including nest dimensions, were consistent with those reported in the literature. Chestnut-backed sparrow-larks in the study area preferred to nest in areas with a high percentage of bare ground (median = 67.5%) and very little vegetation cover (median = 25%). Most nests faced in a southerly direction compared to nests in the north of the species’ range, which face in a north-easterly or easterly direction. The species’ preference to face the nests away from the midday sun most probably serves a thermoregulatory function to avoid excessive heat during the warmest parts of the day. Most nests (78.2%) had an apron varying in size from small and insignificant to large and well-developed. The functional significance of the apron remains a matter of conjecture and there was no association between breeding success and presence or absence of the apron. In addition, one pair constructed one nest with and another without an apron, suggesting that individual preference or characteristic is not a determinant factor in the construction of an apron. Both sexes took part in nest construction, incubation and feeding and brooding of nestlings. However, the relative contributions were not entirely symmetrical as males incubated a greater proportion (50.1%) of the time compared to females (43.1%), and the mean and median of male incubation shift lengths were longer than that of females, albeit not statistically significant. However, females made statistically significantly (P < 0.05) more nest visits to deliver food compared to males (54.6% vs. 45.5%). The average breeding success, estimated using Mayfield’s method, was 16.1% but there were inter-annual differences with the overall breeding success in 2010 being only 8.1% compared to 20.6% of 2008. Known causes of failure included nest depredation, flooding, starvation, nest abandonment and hatching failure. Statistical analysis of morphometric data of live specimens and museum study skins suggest that, in addition to being sexually dichromatic, chestnut-backed sparrowlarks also exhibit mild sexual size dimorphism. However, there was considerable overlap in these measurements between the sexes and as a result the biological significance of this sexual size dimorphism may be negligible. Nevertheless, the ix results show chestnut-backed sparrow-lark males tend to have longer wings and tails compared to females. This may be adaptive with respect to the extended display flights that males perform during the breeding season. Interestingly, the mean mass of breeding females in the study area was significantly more compared to males, whereas the SAFRING database, representing data recorded throughout the year, showed no significant differences in the mean mass between the sexes. The greater mass of breeding females may relate to physiological changes associated with the acquisition of resources and the development of structures and tissues associated with egg-laying and egg-production. Larks rely heavily on vocalizations to attract mates and advertise territories. Not surprisingly, the study revealed a rich vocal repertoire for the chestnut-backed sparrow-lark. The analysis of the vocalizations shows that chestnut-backed sparrowlarks have a display song performed by males, a sub-song sung by both sexes and various different calls used in different contexts, e.g. flight and alarm calls. The study also presents the first analysis and description of the vocalizations of nestlings. An interesting feature of the vocalizations of the chestnut-backed sparrow-larks was that they performed hetero-specific vocal mimicry, which was incorporated in the subsong. Moult is a relatively unknown aspect in the annual cycle of the majority of larks. Chestnut-backed sparrow-larks undergo post-breeding moult, which is an adaptation to reduce the conflict between moult and breeding as both activities have high energy demands. The moult study also showed that they undergo a partial moult in mid-winter, involving the inner-most secondaries and some of the contour feathers. The results of this study shed valuable light on the natural history of this species and contributed significantly to ornithology and our growing understanding of the biology and ecology of the family. The results can also form a basis for future inter- and intraspecific comparative studies. The study illustrates the importance of undertaking long term studies of species to account for inter-annual differences in various ecological parameters.