Academic literature on the topic 'Ancestral range reconstruction'

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Journal articles on the topic "Ancestral range reconstruction"

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Wang, Ning, Rebecca T. Kimball, Edward L. Braun, Bin Liang, and Zhengwang Zhang. "Ancestral range reconstruction of Galliformes: the effects of topology and taxon sampling." Journal of Biogeography 44, no. 1 (2016): 122–35. http://dx.doi.org/10.1111/jbi.12782.

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Guillory, Wilson X., and Jason L. Brown. "A New Method for Integrating Ecological Niche Modeling with Phylogenetics to Estimate Ancestral Distributions." Systematic Biology 70, no. 5 (2021): 1033–45. http://dx.doi.org/10.1093/sysbio/syab016.

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Abstract Ancestral range estimation and projection of niche models into the past have both become common in evolutionary studies where the ancient distributions of organisms are in question. However, these methods are hampered by complementary hurdles: discrete characterization of areas in ancestral range estimation can be overly coarse, especially at shallow timescales, and niche model projection neglects evolution. Phylogenetic niche modeling accounts for both of these issues by incorporating knowledge of evolutionary relationships into a characterization of environmental tolerances. We pres
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Aadland, Kelsey, and Bryan Kolaczkowski. "Alignment-Integrated Reconstruction of Ancestral Sequences Improves Accuracy." Genome Biology and Evolution 12, no. 9 (2020): 1549–65. http://dx.doi.org/10.1093/gbe/evaa164.

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Abstract Ancestral sequence reconstruction (ASR) uses an alignment of extant protein sequences, a phylogeny describing the history of the protein family and a model of the molecular-evolutionary process to infer the sequences of ancient proteins, allowing researchers to directly investigate the impact of sequence evolution on protein structure and function. Like all statistical inferences, ASR can be sensitive to violations of its underlying assumptions. Previous studies have shown that, whereas phylogenetic uncertainty has only a very weak impact on ASR accuracy, uncertainty in the protein se
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Clark, John R., Richard H. Ree, Michael E. Alfaro, Matthew G. King, Warren L. Wagner, and Eric H. Roalson. "A Comparative Study in Ancestral Range Reconstruction Methods: Retracing the Uncertain Histories of Insular Lineages." Systematic Biology 57, no. 5 (2008): 693–707. http://dx.doi.org/10.1080/10635150802426473.

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Sýkora, Vit, David García-Vázquez, David Sánchez-Fernández, and Ignacio Ribera. "Range expansion and ancestral niche reconstruction in the Mediterranean diving beetle genus Meladema (Coleoptera, Dytiscidae)." Zoologica Scripta 46, no. 4 (2017): 445–58. http://dx.doi.org/10.1111/zsc.12229.

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Clark, John R., Warren L. Wagner, and Eric H. Roalson. "Patterns of diversification and ancestral range reconstruction in the southeast Asian–Pacific angiosperm lineage Cyrtandra (Gesneriaceae)." Molecular Phylogenetics and Evolution 53, no. 3 (2009): 982–94. http://dx.doi.org/10.1016/j.ympev.2009.09.002.

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Sharma, Prashant P., and Gonzalo Giribet. "The evolutionary and biogeographic history of the armoured harvestmen – Laniatores phylogeny based on ten molecular markers, with the description of two new families of Opiliones (Arachnida)." Invertebrate Systematics 25, no. 2 (2011): 106. http://dx.doi.org/10.1071/is11002.

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We investigated the internal phylogeny of Laniatores, the most diverse suborder of Opiliones, using sequence data from 10 molecular loci: 12S rRNA, 16S rRNA, 18S rRNA, 28S rRNA, cytochrome c oxidase subunit I (COI), cytochrome b, elongation factor-1α, histones H3 and H4, and U2 snRNA. Exemplars of all previously described families of Laniatores were included, in addition to two families – Petrobunidae, fam. nov. and Tithaeidae, fam. nov. – that we erect herein. Data analyses were based on maximum likelihood and Bayesian approaches on static alignments, and included phylogenetic tree estimation
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Kolanowska, Marta, Katarzyna Mystkowska, Marta Kras, Magdalena Dudek, and Kamil Konowalik. "Evolution of the climatic tolerance and postglacial range changes of the most primitive orchids (Apostasioideae) within Sundaland, Wallacea and Sahul." PeerJ 4 (August 31, 2016): e2384. http://dx.doi.org/10.7717/peerj.2384.

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The location of possible glacial refugia of six Apostasioideae representatives is estimated based on ecological niche modeling analysis. The distribution of their suitable niches during the last glacial maximum (LGM) is compared with their current potential and documented geographical ranges. The climatic factors limiting the studied species occurrences are evaluated and the niche overlap between the studied orchids is assessed and discussed. The predicted niche occupancy profiles and reconstruction of ancestral climatic tolerances suggest high level of phylogenetic niche conservatism within A
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Schmidt-Lebuhn, Alexander N., and Kiarrah J. Smith. "From the desert it came: evolution of the Australian paper daisy genus Leucochrysum (Asteraceae, Gnaphalieae)." Australian Systematic Botany 29, no. 3 (2016): 176. http://dx.doi.org/10.1071/sb16012.

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Present patterns of diversity in the Australian flora have been shaped by increasing seasonality since the Eocene, and by pronounced aridification in the past 3 million years. Arid-zone plants are commonly hypothesised to be the products of radiations of ancestrally temperate or coastal lineages, as in the case of the everlasting paper daisy tribe Gnaphalieae (Asteraceae). However, these inferences are often based on higher-level phylogenies, whereas evolutionary processes in the Australian Gnaphalieae have rarely been studied at the species level. Here, we reconstructed the phylogeny and biog
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Nagy, Jenő, and Jácint Tökölyi. "Phylogeny, Historical Biogeography and the Evolution of Migration in Accipitrid Birds of Prey (Aves: Accipitriformes)." Ornis Hungarica 22, no. 1 (2014): 15–35. http://dx.doi.org/10.2478/orhu-2014-0008.

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Abstract Migration plays a fundamental part in the life of most temperate bird species. The regular, large-scale seasonal movements that characterize temperate migration systems appear to have originated in parallel with the postglacial northern expansion of tropical species. Migratoriness is also influenced by a number of ecological factors, such as the ability to survive harsh winters. Hence, understanding the origins and evolution of migration requires integration of the biogeographic history and ecology of birds in a phylogenetic context. We used molecular dating and ancestral state recons
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Dissertations / Theses on the topic "Ancestral range reconstruction"

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Clark, John Robert. "Phylogeny, ancestral range reconstruction and partial taxonomic revision of Pacific Cyrtandra (Gesneriaceae)." Online access for everyone, 2008. http://www.dissertations.wsu.edu/Dissertations/Spring2008/j_clark_042308.pdf.

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Eme, David. "Approches macro-écologique et phylogéographique pour démêler facteurs et processus responsables des patrons de biodiversité aquatique souterraine en Europe." Thesis, Lyon 1, 2014. http://www.theses.fr/2014LYO10134/document.

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Un ensemble de disciplines tente de comprendre les causes de la distribution de la biodiversité à la surface de la terre. Cette thèse, à l'interface entre macro-écologie et phylogéographie, démêle le rôle relatif des différents facteurs environnementaux et des processus contrôlant la diversité des crustacés aquatiques souterrains en Europe. L'utilisation d'un modèle biologique souterrain permet d'écarter l'effet de la saisonnalité thermique, omniprésente dans les milieux de surface. L'action de multiples facteurs – plus particulièrement la disponibilité des ressources trophiques et l'hétérogén
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Kumarage, Lakmini Darshika. "The biogeographic affinities of the Sri Lankan flora." Thesis, University of Edinburgh, 2017. http://hdl.handle.net/1842/29550.

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The island of Sri Lanka’s exceptional biodiversity and enigmatic biogeography begs investigation, as the island is key in understanding the evolution of the Asian tropical flora. Since the Jurassic, Sri Lanka has been subjected to remarkable tectonic changes, thus its flora could have been influenced by that of a number of nearby landmasses, as well giving Sri Lanka the potential to have played a wider role in the assemblage of floras elsewhere. Firstly, as Sri Lanka originated as a fragment of the supercontinent Gondwana, part of its flora may contain Gondwanan relict lineages. There is also
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Cai, Rongman. "New hypotheses about the origin of Pseudomonas syringae crop pathogens." Diss., Virginia Tech, 2012. http://hdl.handle.net/10919/37806.

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Pseudomonas syringae is a common foliar plant pathogenic bacterium that causes diseases on many crop plants. We hypothesized that todayâ s highly virulent P. syringae crop pathogens with narrow host range might have evolved after the advent of agriculture from ancestral P. syringae strains with wide host range that were adapted to mixed plant communities. The model tomato and Arabidopsis pathogen P. syringae pv. tomato (Pto) DC3000 and its close relatives isolated from crop plants were thus selected to unravel basic principles of host range evolution by applying molecular evolutionary analysi
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Book chapters on the topic "Ancestral range reconstruction"

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Clifton, Ben E., Jason H. Whitfield, Inmaculada Sanchez-Romero, et al. "Ancestral Protein Reconstruction and Circular Permutation for Improving the Stability and Dynamic Range of FRET Sensors." In Methods in Molecular Biology. Springer New York, 2017. http://dx.doi.org/10.1007/978-1-4939-6940-1_5.

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Sarna-Wojcicki, Andrei M. "Late Cenozoic paleogeographic reconstruction of the San Francisco Bay area from analysis of stratigraphy, tectonics, and tephrochronology." In Regional Geology of Mount Diablo, California: Its Tectonic Evolution on the North America Plate Boundary. Geological Society of America, 2021. http://dx.doi.org/10.1130/2021.1217(17).

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ABSTRACT The Neogene stratigraphic and tectonic history of the Mount Diablo area is a consequence of the passage of the Mendocino triple junction by the San Francisco Bay area between 12 and 6 Ma, volcanism above a slab window trailing the Mendocino triple junction, and crustal transpression beginning ca. 8–6 Ma, when the Pacific plate and Sierra Nevada microplate began to converge obliquely. Between ca. 12 and 6 Ma, parts of the Sierra Nevada microplate were displaced by faults splaying from the main trace of the San Andreas fault and incorporated into the Pacific plate. The Mount Diablo anticlinorium was formed by crustal compression within a left-stepping, restraining bend of the eastern San Andreas fault system, with southwest-verging thrusting beneath, and with possible clockwise rotation between faults on its southeast and northwest sides. At ca. 10.5 Ma, a drainage divide formed between the northern Central Valley and the ocean. Regional uplift accelerated at ca. 6 Ma with onset of transpression between the Pacific and North America plates. Marine deposition ceased in the eastern Coast Range basins as a consequence of the regional uplift accompanying passage of the Mendocino triple junction, and trailing slab-window volcanism. From ca. 11 to ca. 5 Ma, andesitic volcanic intrusive rocks and lavas were erupted along the northwest crest of the central to northern Sierra Nevada and deposited on its western slope, providing abundant sediment to the northern Central Valley and the northeastern Coast Ranges. Sediment filled the Central Valley and overtopped the Stockton fault and arch, forming one large, south-draining system that flowed into a marine embayment at its southwestern end, the ancestral San Joaquin Sea. This marine embayment shrunk with time, and by ca. 2.3 Ma, it was eventually cut off from the ocean. Fluvial drainage continued southwest in the Central Valley until it was cut off in turn, probably by some combination of sea-level fluctuations and transpression along the San Andreas fault that uplifted, lengthened, and narrowed the outlet channel. As a consequence, a great lake, Lake Clyde, formed in the Central Valley at ca. 1.4 Ma, occupying all of the ancestral San Joaquin Valley and part of the ancestral Sacramento Valley. The lake rose and fell with global glacial and interglacial cycles. After a long, extreme glacial period, marine oxygen isotope stage (MIS) 16, it overtopped the Carquinez sill at 0.63 Ma and drained via San Francisco valley (now San Francisco Bay) and the Colma gap into the Merced marine embayment of the Pacific Ocean. Later, a new outlet for Central Valley drainage formed between ca. 130 and ca. 75 ka, when the Colma gap closed due to transpression and right-slip motion on the San Andreas fault, and Duxbury Point at the south end of the Point Reyes Peninsula moved sufficiently northwest along the San Andreas fault to unblock a bedrock notch, the feature we now call the Golden Gate.
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