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Relevant bibliographies by topics / Arginine clusters

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Journal articles

Academic literature on the topic 'Arginine clusters'

Author: Grafiati

Published: 6 September 2023

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Journal articles on the topic "Arginine clusters"

1

Horbal, Liliya, Marc Stierhof, Anja Palusczak, Nikolas Eckert, Josef Zapp, and Andriy Luzhetskyy. "Cyclofaulknamycin with the Rare Amino Acid D-capreomycidine Isolated from a Well-Characterized Streptomyces albus Strain." Microorganisms 9, no. 8 (2021): 1609. http://dx.doi.org/10.3390/microorganisms9081609.

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Targeted genome mining is an efficient method of biosynthetic gene cluster prioritization within constantly growing genome databases. Using two capreomycidine biosynthesis genes, alpha-ketoglutarate-dependent arginine beta-hydroxylase and pyridoxal-phosphate-dependent aminotransferase, we identified two types of clusters: one type containing both genes involved in the biosynthesis of the abovementioned moiety, and other clusters including only arginine hydroxylase. Detailed analysis of one of the clusters, the flk cluster from Streptomyces albus, led to the identification of a cyclic peptide t

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2

Shaikh, A. R., and D. Shah. "Arginine-Amino Acid Interactions and Implications to Protein Solubility and Aggregation." Journal of Engineering Research [TJER] 12, no. 2 (2015): 1. http://dx.doi.org/10.24200/tjer.vol12iss2pp1-14.

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Arginine, useful in protein refolding, solubilization of proteins, and suppression of protein aggregation and non-specific adsorption during formulation and purification, is a ubiquitous additive in the biotechnology and pharmaceutical industries. In order to provide a framework for analyzing the molecular level mechanisms behind arginine/protein interactions in the above context, density functional theory was used to systematically examine how arginine interacts with naturally occurring amino acids. The results show that the most favorable interaction of arginine is with acidic amino acids an

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3

Bentham, Matthew, Sabine Mazaleyrat, and Mark Harris. "Role of myristoylation and N-terminal basic residues in membrane association of the human immunodeficiency virus type 1 Nef protein." Journal of General Virology 87, no. 3 (2006): 563–71. http://dx.doi.org/10.1099/vir.0.81200-0.

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Human immunodeficiency virus type 1 Nef protein is N-terminally myristoylated, a modification reported to be required for the association of Nef with cytoplasmic membranes. As myristate alone is not sufficient to anchor a protein stably into a membrane, it has been suggested that N-terminal basic residues contribute to Nef membrane association via electrostatic interactions with acidic phospholipids. Here, data are presented pertaining to the role of the myristate and basic residues in Nef membrane association, subcellular localization and function. Firstly, by using a biochemical assay for me

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4

Luo, Xiaomei, and Juncheng Liu. "Transcriptome Analysis of Acid-Responsive Genes and Pathways Involved in Polyamine Regulation in Iron Walnut." Genes 10, no. 8 (2019): 605. http://dx.doi.org/10.3390/genes10080605.

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We reported changes in the co-regulated mRNA expression in iron walnut (Juglans sigillata) in response to soil pH treatments and identified mRNAs specific to acidic soil conditions. Phenotypic and physiological analyses revealed that iron walnut growth was greater for the pH 4–5 and pH 5–6 treatments than for the pH 3–4 and pH 6–7 treatments. A total of 2768 differentially expressed genes were detected and categorized into 12 clusters by Short Time-series Expression Miner (STEM). The 994 low-expression genes in cluster III and 255 high-expression genes in cluster X were classified as acid-resp

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5

Brudar, Sandi, and Barbara Hribar-Lee. "The Effect of Arginine on the Phase Stability of Aqueous Hen Egg-White Lysozyme Solutions." International Journal of Molecular Sciences 24, no. 2 (2023): 1197. http://dx.doi.org/10.3390/ijms24021197.

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The effect of arginine on the phase stability of the hen egg-white lysozyme (HEWL) has been studied via molecular dynamics computer simulations, as well as experimentally via cloud-point temperature determination. The experiments show that the addition of arginine increases the stability of the HEWL solutions. The computer simulation results indicate that arginine molecules tend to self-associate. If arginine residues are located on the protein surface, the free arginine molecules stay in their vicinity and prevent the way protein molecules “connect” through them to form clusters. The results

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6

Kohbara, J., W. Michel, and J. Caprio. "Responses of single facial taste fibers in the channel catfish, Ictalurus punctatus, to amino acids." Journal of Neurophysiology 68, no. 4 (1992): 1012–26. http://dx.doi.org/10.1152/jn.1992.68.4.1012.

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1. Amino acids and nucleotides stimulate taste receptors of teleosts. In this report, responses to these compounds of 105 facial taste fibers (79 fully characterized) that innervate maxillary barbel taste buds of the channel catfish (Ictalurus punctatus) were analyzed. 2. The fully characterized facial taste fibers that responded to amino acids (n = 68) were generally poorly responsive to nucleotides and related substances (NRS), whereas the fibers responsive to NRS (n = 11) were poorly responsive to amino acids. Spike discharge of the amino acid-responsive fibers to the most potent amino acid

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7

Smart, W. C., J. A. Coffman, and T. G. Cooper. "Combinatorial regulation of the Saccharomyces cerevisiae CAR1 (arginase) promoter in response to multiple environmental signals." Molecular and Cellular Biology 16, no. 10 (1996): 5876–87. http://dx.doi.org/10.1128/mcb.16.10.5876.

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CAR1 (arginase) gene expression responds to multiple environmental signals; expression is induced in response to the intracellular accumulation of arginine and repressed when readily transported and catabolized nitrogen sources are available in the environment. Up to 14 cis-acting sites and 9 trans-acting factors have been implicated in regulated CAR1 transcription. In all but one case, the sites are redundant. To test whether these sites actually participate in CAR1 expression, each class of sites was inactivated by substitution mutations that retained the native spacing of the CAR1 cis-actin

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8

Smart, Scott E., Viktor Dubovoy, and Long Pan. "Stabilization of cationic aluminum hydroxide clusters in high pH environments with a CaCl2/l-arginine matrix." Chemical Communications 55, no. 43 (2019): 5998–6001. http://dx.doi.org/10.1039/c9cc01463b.

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9

Nam, Yong-Suk, Ana Petrovic, Kyu-Shik Jeong, and Sundararajan Venkatesan. "Exchange of the Basic Domain of Human Immunodeficiency Virus Type 1 Rev for a Polyarginine Stretch Expands the RNA Binding Specificity, and a Minimal Arginine Cluster Is Required for Optimal RRE RNA Binding Affinity, Nuclear Accumulation, andtrans-Activation." Journal of Virology 75, no. 6 (2001): 2957–71. http://dx.doi.org/10.1128/jvi.75.6.2957-2971.2001.

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ABSTRACT The Rev regulatory protein of human immunodeficiency virus (HIV) facilitates the nuclear export of unspliced and partially spliced HIV RNAs. Using a Rev:MS2 phage coat protein fusion that could be targeted to bind and activate the Rev-responsive element (RRE) RNA or heterologous MS2 phage operator RNA, we analyzed the role(s) of the arginine-rich RNA binding domain in RNA binding and transactivation. The arginine-rich domain could be functionally replaced by a stretch of nine arginines. However, polyarginine substitutions expanded the RNA binding specificity of the resultant mutant Re

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10

Ghiasi, Mina, Shadi Bavafa, and Mansour Zahedi. "QM study of interaction between arginine amino acid and Au clusters and the effects on arginine acidity." Gold Bulletin 54, no. 1 (2021): 45–57. http://dx.doi.org/10.1007/s13404-021-00292-7.

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