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1

Ryu, Choong-Min, Laure Weisskopf, and Birgit Piechulla, eds. Bacterial Volatile Compounds as Mediators of Airborne Interactions. Springer Singapore, 2020. http://dx.doi.org/10.1007/978-981-15-7293-7.

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2

König, Helmut. Prokaryotic Cell Wall Compounds: Structure and Biochemistry. Springer-Verlag Berlin Heidelberg, 2010.

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3

Klubek, B. Microbial removal of organic sulfur from coal (bacterial degradation of sulfur-containing heterocyclic compounds). s.n, 1987.

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4

Crawford, D. Biotransformations of coal and coal substructure model compounds by bacterial under aerobic and anaerobic conditions. s.n, 1990.

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5

1949-, Sayler Gary S., and Blackburn James W. 1950-, eds. Microbiological decomposition of chlorinated aromatic compounds. M. Dekker, 1987.

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6

Janson, Ortrun. Analytik, Bewertung und Bilanzierung gasförmiger Emissionen aus anaeroben Abbauprozessen unter besonderer Berücksichtigung der Schwefelverbindungen. E. Schmidt, 1988.

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7

Hampshire), Conference on Iron Biominerals (1989 University of New. Iron biominerals. Plenum Press, 1991.

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8

Smith, Neil A. Metabolism of dimethyl disulphide, carbon disulphide and other volatile sulphur compounds by chemolithoautotrophic sulphur bacteria. typescript, 1988.

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9

Wolfe, Gordon V. Accumulation of dissolved DMSP by marine bacteria and its degradation via bacterivory. National Aeronautics and Space Administration, 1996.

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10

International In Situ and On-Site Bioremediation Symposium (6th 2001 San Diego, Calif.). Anaerobic degradation of chlorinated solvents: The Sixth International In Situ and On-Site Bioremediation Symposium : San Diego, California, June 4-7, 2001. Edited by Magar V. 1964-. Battelle Press, 2001.

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11

Wahyudi, Aris Tri. Sponge-associated bacteria producing bioactive compounds, screening, analysis of antimicrobial compounds, and its genetic study: Competitive grant of overseas research collaboration and international publication : research report. Lembaga Penelitian dan Pengabdian Kepada Masyarakat, Bogor Agricultural University, 2010.

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12

Wolfe, Gordon V. Grazing-activated production of dimethyl sulfide (DMS) by two clones of Emiliania huxleyi. National Aeronautics and Space Administration, 1998.

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13

Wolfe, Gordon V. Grazing-activated production of dimethyl sulfide (DMS) by two clones of Emiliania huxleyi. National Aeronautics and Space Administration, 1998.

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14

Wolfe, Gordon V. Grazing-activated production of dimethyl sulfide (DMS) by two clones of Emiliania huxleyi. National Aeronautics and Space Administration, 1998.

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15

Wolfe, Gordon V. Grazing-activated production of dimethyl sulfide (DMS) by two clones of Emiliania huxleyi. National Aeronautics and Space Administration, 1998.

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16

Joy, Joe. Data summary: Lower Nooksack River Basin bacteria total maximum daily load. Washington State Dept. of Ecology, 2000.

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17

Charles, Humfrey, Shuker Linda, and Harrison Paul 1953-, eds. IEH assessment on indoor air quality in the home: Nitrogen dioxide, formaldehyde, volatile organic compounds, house dust mites, fung, and bacteria. Institue for Environment and Health, 1996.

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18

Levén, Lotta. Anaerobic digestion at mesophilic and thermophilic temperature: With emphasis on degradation of phenols and structures of microbial communities. Swedish University of Agricultural Sciences, 2006.

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19

Bartholomay, Roy C. Radionuclides, inorganic constituents, organic compounds, and bacteria in water from selected wells and springs from the southern boundary of the Idaho National Engineering Laboratory to the Hagerman area, Idaho, 1991. U.S. Dept. of the Interior, U.S. Geological Survey, 1993.

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20

1943-, Fusetani Nobuhiro, and Clare Anthony S, eds. Antifouling compounds. Springer, 2006.

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21

Laboratory, Water Engineering Research, ed. Influence of phosphate corrosion control compounds on bacterial growth: Project summary. U.S. Environmental Protection Agency, Water Engineering Research Laboratory, 1987.

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22

Laboratory, Water Engineering Research, ed. Influence of phosphate corrosion control compounds on bacterial growth: Project summary. U.S. Environmental Protection Agency, Water Engineering Research Laboratory, 1987.

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23

Ely, Roger L. Effects of substrate interactions, toxicity, and bacterial response during cometabolism of chlorinted solvents by nitrifying bacteria. 1996.

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24

Krist, Sabine. Volatile Compounds: The Utilisation of Volatile Compounds in the Characterisation of Vegetable Oils and Fats and in Reducing the Bacterial Count of Ambient Air. Lang GmbH, Internationaler Verlag der Wissenschaften, Peter, 2011.

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25

Manca de Nadra, María Cristina., ed. Nitrogen compounds metabolism by lactic acid bacteria. Transworld Research Network, 2008.

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26

Kirchman, David L. Degradation of organic matter. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0007.

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The aerobic oxidation of organic material by microbes is the focus of this chapter. Microbes account for about 50% of primary production in the biosphere, but they probably account for more than 50% of organic material oxidization and respiration (oxygen use). The traditional role of microbes is to degrade organic material and to release plant nutrients such as phosphate and ammonium as well as carbon dioxide. Microbes are responsible for more than half of soil respiration, while size fractionation experiments show that bacteria are also responsible for about half of respiration in aquatic hab
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27

V, Roberts Paul, and Robert S. Kerr Environmental Research Laboratory, eds. In-situ aquifer restoration of chlorinated aliphatics by methanotrophic bacteria. U.S. Environmental Protection Agency, Robert S. Kerr Environmental Research Laboratory, Office of Research and Development, 1989.

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28

Kirchman, David L. Processes in anoxic environments. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0011.

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During organic material degradation in oxic environments, electrons from organic material, the electron donor, are transferred to oxygen, the electron acceptor, during aerobic respiration. Other compounds, such as nitrate, iron, sulfate, and carbon dioxide, take the place of oxygen during anaerobic respiration in anoxic environments. The order in which these compounds are used by bacteria and archaea (only a few eukaryotes are capable of anaerobic respiration) is set by thermodynamics. However, concentrations and chemical state also determine the relative importance of electron acceptors in or
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29

Dalbey, R. E. Protein Export and Membrane Biogenesis (Advances in Cellular and Molecular Biology of Membranes and Organelles). Elsevier Science, 1995.

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30

(Editor), R. Blakemore, and R. Frankel (Editor), eds. Iron Biominerals. Springer, 1991.

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31

Valladao, Marilin. Growth of lactococci relative to antibiotic and quaternary ammonium compounds. 1990.

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32

Kirchman, David L. Microbial growth, biomass production, and controls. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0008.

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Soon after the discovery that bacteria are abundant in natural environments, the question arose as to whether or not they were active. Although the plate count method suggested that they were dormant if not dead, other methods indicated that a large fraction of bacteria and fungi are active, as discussed in this chapter. It goes on to discuss fundamental equations for exponential growth and logistic growth, and it describes phases of growth in batch cultures, continuous cultures, and chemostats. In contrast with measuring growth in laboratory cultures, it is difficult to measure in natural env
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33

Federation, Water Environment, and Bhaskar Ballapragada. Toxic Chlorinated Compounds: Fate and Biodegradation in Anaerobic Digestion. Water Environment Research Foundation, 1998.

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34

Bhaskar, Ballapragada, and Water Environment Research Foundation, eds. Toxic chlorinated compounds: Fate and biodegradation in anaerobic digestion. Water Environment Research Foundation, 1998.

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35

Kirchman, David L. The nitrogen cycle. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0012.

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Nitrogen is required for the biosynthesis of many cellular components and can take on many oxidation states, ranging from −3 to +5. Consequently, nitrogen compounds can act as either electron donors (chemolithotrophy) or electron acceptors (anaerobic respiration). The nitrogen cycle starts with nitrogen fixation, the reduction of nitrogen gas to ammonium. Nitrogen fixation is carried out only by prokaryotes, mainly some cyanobacteria and heterotrophic bacteria. The ammonium resulting from nitrogen fixation is quickly used by many organisms for biosynthesis, being preferred over nitrate as a ni
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36

Fawcett, Kimberly A. Effects of chlorinated aliphatic hydrocarbon degradation on the metabolic enzymes in Nitrosomonas europaea. 1999.

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37

Diego, Calif ). International In Situ and On-Site Bioremediation Symposium (6th :. 2001 :. San. Anaerobic Degradation of Chlorinated Solvents: The Sixth International in Situ and On-Site Bioremediation Symposium, San Diego, California, June 4-7, 2001 ... in Situ and On-Site Bioremediation Sympo). Battelle Press, 2001.

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38

1934-, Neu Harold C., and International Conference on the Macrolides, Azalides, and Streptogramins (2nd : 1994 : Venice, Italy), eds. New macrolides, azalides, and streptogramins in clinical practice. M. Dekker, 1995.

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39

Neu, Harold C. Macrolides, Azolides and Streptogramins in Clinical Practice (Infectious Disease and Therapy). Informa Healthcare, 1995.

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40

Canfield, Donald Eugene. Life before Oxygen. Princeton University Press, 2017. http://dx.doi.org/10.23943/princeton/9780691145020.003.0002.

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This chapter discusses the nature of life on ancient Earth before the evolution of oxygen production. It suggests that the Earth enjoyed an active and diverse biosphere well before the evolution of oxygen-producing cyanobacteria. This biosphere was fueled, mainly, by chemical compounds liberated during volcanism, underscoring again the importance of plate tectonics in shaping life on our planet. Geological evidence indicates that many of the processes that we have imagined were part of the early biosphere that was in place 3.5 billion years ago. These processes include methanogenesis, sulfate
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41

Jitnuyanont, Pardi. Comparison of indigenous and bioaugmented butane and propane-utilizers for transforming 1,1,1-trichloroethane in Moffett Field microcosms. 1997.

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42

Kirchman, David L. Elements, biochemicals, and structures of microbes. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0002.

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Microbiologists focus on the basic biochemical make-up of microbes, such as relative amounts of protein, RNA, and DNA in cells, while ecologists and biogeochemists use elemental ratios, most notably, the ratio of carbon to nitrogen (C:N), to explore biogeochemical processes and to connect up the carbon cycle with the cycle of other elements. Microbial ecologists make use of both types of data and approaches. This chapter combines both and reviews all things, from elements to macromolecular structures, that make up bacteria and other microbes. The most commonly used elemental ratio was discover
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43

Fierro, Dr Arthur A. BioDefense: How a Combination of Natural Compounds Effectively Destroys Viruses, Bacteria, Fungi and Can Even Protect or Destroy Bioterrorist Diseases Such as Anthrax. PublishAmerica, 2007.

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44

Medical Research Council (Great Britain). IEH assessment on indoor air quality in the home: Nitrogen dioxide, formaldehyde, volatile organic compounds, house dust mites, fung, and bacteria (Assessment ;2). Institue for Environment and Health, 1996.

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45

D, Edwards Daniel, Campbell Linford J, Geological Survey (U.S.), United States. Dept. of Energy, and Idaho. Dept. of Water Resources, eds. Radionuclides, inorganic constituents, organic compounds, and bacteria in water from selected wells and springs from the southern boundary of the Idaho National Engineering Laboratory to the Hagerman area, Idaho, 1992. U.S. Dept. of the Interior, U.S. Geological Survey, 1994.

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46

D, Edwards Daniel, Campbell Linford J, United States. Dept. of Energy, Idaho. Dept. of Water Resources, and Geological Survey (U.S.), eds. Radionuclides, inorganic constituents, organic compounds, and bacteria in water from selected wells and springs from the southern boundary of the Idaho National Engineering Laboratory to the Hagerman Area, Idaho, 1990. U.S. Geological Survey, 1992.

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