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1

Breen, Ciaran. The genetic basis of drug resistance in a pentachlorophenol degrading soil micro-organism. University College Dublin, 1998.

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2

1943-, Shapiro James Allen, and Dworkin Martin, eds. Bacteria as multicellular organisms. Oxford University Press, 1997.

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3

Daniel, Gillet, and Johannes Ludger, eds. Recent research developments in toxins from bacteria and other organisms. Research Signpost, 2006.

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4

Nyberg, Karin. Impact of organic waste residues on structure and function of soil bacterial communities with emphasis on ammonia oxidizing bacteria. Swedish University of Agricultural Sciences, 2006.

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5

K, Poole Robert, ed. Metals and micro-organisms. Chapman and Hall, 1989.

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6

R, Whittenbury, ed. Homeostatic mechanisms in micro-organisms. Published by Bath University Press for the Society for Applied Bacteriology on behalf of the Federation of European Microbiological Societies, 1988.

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7

Dawes, Ian W. Microbial physiology. 2nd ed. Blackwell Scientific Publications, 1992.

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8

Sidorenko, Oleg. Biological systems in the processing of secondary products and agricultural waste. INFRA-M Academic Publishing LLC., 2021. http://dx.doi.org/10.12737/1102076.

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The manual describes technologies for processing secondary products and agricultural waste using macro-and micro-organisms. The regulations of modern biotechnologies of microbial synthesis, bioconversion of secondary raw materials are briefly presented, methods of its processing and characteristics of the obtained target products of bioconversion are described.
 Practical classes introduce students to modern methods of improving environmental quality and production waste from commercial products (organic fertilizers, bacterial preparations, feed additives, etc.), as well as obtain the che
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9

Weaver, Robert E. Gram-negative organisms: An approach to identification (guide to presumptive identification). U.S. Dept. of Health and Human Services, Public Health Service, Centers for Disease Control, 1985.

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10

Weaver, Robert E. Gram-negative organisms: An approach to identification (guide to presumptive identification). U.S. Dept. of Health and Human Services, Public Health Service, Centers for Disease Control, 1985.

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11

D, Brock Thomas, ed. Thermophiles: General, molecular, and applied microbiology. Wiley, 1986.

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12

NATO Advanced Study Institute on Sensory Perception and Transduction in Aneural Organisms (1984 Volterra, Italy). Sensory perception and transduction in aneural organisms. Plenum Press, 1985.

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13

Smith, Mary M. Genus and species of pathogenic organisms: A spelling guide to medical binomial terminology. McFarland, 1991.

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14

Jörg, Hacker, and Dobrindt Ulrich, eds. Pathogenomics: Genome analysis of pathogenic microbes. Wiley-VCH, 2006.

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15

Bell, C. Campylobacter: A practical approach to the organism and its control in foods. Blackwell, 2010.

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16

Primrose, Sandy R. Microbiology of Infectious Disease. Oxford University Press, 2022. http://dx.doi.org/10.1093/oso/9780192863843.001.0001.

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In the late 1990s, the first complete sequences of two bacterial genomes were published. From the analysis of the sequence data, it became possible to elucidate all the biochemical reactions that these bacteria could undertake and all the molecules that they could synthesize, many of which had hitherto been unknown. Now that hundreds of microbial genomes have been sequenced, we can decipher those biochemical features that make an organism a successful pathogen and recognize common strategies for overcoming host defences. We also can get insights to how each pathogen evolved. The objective of t
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17

Morgan, Marina. Other bacterial diseasesStreptococcosis. Oxford University Press, 2011. http://dx.doi.org/10.1093/med/9780198570028.003.0023.

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Many pyogenic (β -haemolytic) streptococci of clinical significance have animal connections. In the last edition of this book two species of streptococci were considered of major zoonotic interest, namely Streptococcus suis and S. zooepidemicus. Since then, numerous sporadic zoonoses due to other streptococci have been reported, and a newly recognized fish pathogen with zoonotic potential termed S. iniae has emerged. Changes in nomenclature make the terminology confusing. For example, the organism known as S. zooepidemicus — now termed S. dysgalactiae subsp. zooepidemicus — still causes pharyn
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18

Dukky, Trump. Harxine: Eradicating the Action of Micro-Organism and Curing the Effect of Bacterial Completely. Independently Published, 2019.

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19

Wilson, John W., and Lynn L. Estes. Treatment of Specific Organisms. Oxford University Press, 2018. http://dx.doi.org/10.1093/med/9780190696924.003.0004.

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This section contains tables covering spectrum of activity, preferred treatment and alternate treatment options various classes of bacteria, fungi, and viruses. Bacterial drug resistance issues are also reviewed.
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20

Rello, Jordi, and Bárbara Borgatta. Pathophysiology of pneumonia. Oxford University Press, 2016. http://dx.doi.org/10.1093/med/9780199600830.003.0115.

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Airway colonization, ventilator-associated tracheobronchitis (VAT), and hospital-acquired (HAP) and ventilator-associated pneumonia (VAP) are three manifestations having the presence of micro-organisms in airways in common. Newer definitions have to consider worsening of oxygenation, in addition to purulent respiratory secretions, chest-X rays opacities, and biomarkers of inflammation. Bacteria are the main causes of HAP/VAP. During hospitalization there’s a shift of airway’s colonizing flora from core organisms to enteric and non-fermentative ones. Macro- and micro-aspiration is the most impo
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21

Solomon, Tom. Meningitis. Oxford University Press, 2011. http://dx.doi.org/10.1093/med/9780198569381.003.0969.

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Meningitis is defined as inflammation of the brain meninges, characterized clinically by inflammatory cells in CSF. When there is concurrent parenchymal brain involvement the term meningoencephalitis is used, meningoencephalomyelitis implies that there is spinal cord involvement too.Although increased cellularity in the CSF, or pleocytosis, is traditionally considered the hallmark of meningitis, some organisms, particularly fungi, can cause meningitis without a pleocytosis, especially in the immunocompromised. The advent of more sensitive methods of detecting viral nucleic acid in the CSF such
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22

Haldar, Pranabashis. Tuberculosis. Edited by Patrick Davey and David Sprigings. Oxford University Press, 2018. http://dx.doi.org/10.1093/med/9780199568741.003.0130.

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Tuberculosis (TB) is an infectious disease caused by the bacterial organism Mycobacterium tuberculosis. In this context, reference to the word ‘disease’ is important, as TB implies Mycobacterium tuberculosis infection associated with symptoms. Approximately 10% of Mycobacterium tuberculosis infection is manifest as disease. In the large majority of cases, Mycobacterium tuberculosis infection is latent and defined by evidence of a measurable and significant cell-mediated immune response to mycobacterial antigens, in the absence of clinical or radiological evidence of disease. TB may be clinical
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23

Kirchman, David L. The ecology of viruses. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0010.

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In addition to grazing, another form of top-down control of microbes is lysis by viruses. Every organism in the biosphere is probably infected by at least one virus, but the most common viruses are thought to be those that infect bacteria. Viruses come in many varieties, but the simplest is a form of nucleic acid wrapped in a protein coat. The form of nucleic acid can be virtually any type of RNA or DNA, single or double stranded. Few viruses in nature can be identified by traditional methods because their hosts cannot be grown in the laboratory. Direct count methods have found that viruses ar
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24

Kirchman, David L. Genomes and meta-omics for microbes. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0005.

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The sequencing of entire genomes of microbes grown in pure cultures is now routine. The sequence data from cultivated microbes have provided insights into these microbes and their uncultivated relatives. Sequencing studies have found that bacterial genomes range from 0.18 Mb (intracellular symbiont) to 13 Mb (a soil bacterium), whereas genomes of eukaryotes are much bigger. Genomes from eukaryotes and prokaryotes are organized quite differently. While bacteria and their small genomes often grow faster than eukaryotes, there is no correlation between genome size and growth rates among the bacte
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25

Bittleston, Leonora S. Commensals of Nepenthes pitchers. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198779841.003.0023.

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Carnivorous Nepenthes pitcher plants contain aquatic ecosystems within each fluid-filled pitcher. Communities of arthropods and microbes colonize pitcher pools, and some organisms are endemic to the pitcher habitat. Flies and mites are the most apparent colonizers, and together with numerous protists, fungi, and bacteria, they form a food web of predators, decomposers, and primary producers. Bacterial diversity and composition are correlated strongly with fluid pH. Closely related organisms co-occur within pitchers, suggesting that competition is not the primary structuring force of pitcher co
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26

Kirchman, David L. Degradation of organic matter. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0007.

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The aerobic oxidation of organic material by microbes is the focus of this chapter. Microbes account for about 50% of primary production in the biosphere, but they probably account for more than 50% of organic material oxidization and respiration (oxygen use). The traditional role of microbes is to degrade organic material and to release plant nutrients such as phosphate and ammonium as well as carbon dioxide. Microbes are responsible for more than half of soil respiration, while size fractionation experiments show that bacteria are also responsible for about half of respiration in aquatic hab
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27

Palacios, Rafael, and William E. Newton. Genomes and Genomics of Nitrogen-fixing Organisms. Palacios Rafael Newton William E, 2011.

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28

Kirchman, David L. Processes in anoxic environments. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0011.

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During organic material degradation in oxic environments, electrons from organic material, the electron donor, are transferred to oxygen, the electron acceptor, during aerobic respiration. Other compounds, such as nitrate, iron, sulfate, and carbon dioxide, take the place of oxygen during anaerobic respiration in anoxic environments. The order in which these compounds are used by bacteria and archaea (only a few eukaryotes are capable of anaerobic respiration) is set by thermodynamics. However, concentrations and chemical state also determine the relative importance of electron acceptors in or
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29

Sharp, Michelle. Aseptic Meningitis. Oxford University Press, 2016. http://dx.doi.org/10.1093/med/9780199976805.003.0006.

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Aseptic meningitis is defined as acute meningeal inflammation, fever, and headache in the absence of detectable organisms in the cerebral spinal fluid (CSF). Organisms involved can include viruses (enteroviruses being most common), fungi, atypical bacteria, or parasites. Often, encephalitis (inflammation of the brain) and meningitis overlap. In contrast to the mental status changes typical of encephalitis, however, aseptic meningitis characteristically presents as a headache without alteration of mentation or personality. Additional causes include drug-induced aseptic meningitis (eg, NSAIDs an
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30

Ellis, David B. Iron Bacteria - Organisms And Their Identification - Illustrated. Merchant Books, 2006.

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31

Park, William Hallock, and Anna Wessels Williams. Pathogenic Micro-Organisms: Including Bacteria and Protozoa. Arkose Press, 2015.

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32

Lesli J., Ph.D. Favor. Bacteria (Germs! the Library of Disease Causing Organisms). Rosen Publishing Group, 2003.

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33

Patterson, DJ, and MA Burford. Guide to Protozoa of Marine Aquaculture Ponds. CSIRO Publishing, 2001. http://dx.doi.org/10.1071/9780643101081.

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As well as being a culture environment for fish and crustaceans, an aquaculture pond is a rich and complex ecosystem that is dominated by the microbial community. The community is nourished by food and sunlight, and is made up of algae, bacteria and, importantly, protozoa. Protozoa live by eating other organisms and detritus, or by absorbing soluble organic matter dissolved in the water. Ultimately they affect water quality in aquaculture ponds, including the stability of algal and bacterial communities, and nutrient concentrations. In addition, some protozoa can have adverse effects on the he
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34

Zoysa, Aruni De. Other bacterial diseasesDiseases caused by corynebacteria and related organisms. Oxford University Press, 2011. http://dx.doi.org/10.1093/med/9780198570028.003.0019.

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The genus Corynebacterium contains the species Corynebacterium diphtheriae and the non-diphtherial corynebacteria. C. diphtheriae is the major human pathogen in this genus, but several species of nondiphtheria corynebacteria appear to be emerging as important pathogens.Zoonotic corynebacteria rarely cause disease in humans, but recent reports have indicated that the frequency and severity of infection associated with Corynebacterium ulcerans has increased in many countries. In the past most human C.ulcerans infections have occurred through close contact with farm animals or by consumption of u
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35

Palacios, Rafael. Genomes and Genomics of Nitrogen-Fixing Organisms (Nitrogen Fixation). Springer, 2005.

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36

Dictionary of Antibiotic-Producing Organisms. Taylor & Francis, 1992.

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37

Bowler, Ian, and Matthew Scarborough. Treatment of infection. Edited by Patrick Davey and David Sprigings. Oxford University Press, 2018. http://dx.doi.org/10.1093/med/9780199568741.003.0307.

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Infection can be regarded as a struggle between the host and the infecting organism, which may be a bacterium, a virus, a protozoan, or a fungus. The likelihood that an infection will occur will depend on the number of organisms, their virulence, and the quality of the host defences. ‘Treatment’ involves shifting the balance in favour of the host. In this chapter, the principles of treatment of infection are reviewed, with examples drawn from a range of clinical settings.
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38

Barreto-Bergter, Eliana, ed. Glycan Diversity in Fungi, Bacteria and Sea Organisms. Frontiers Media SA, 2016. http://dx.doi.org/10.3389/978-2-88919-942-6.

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39

Nuclear Structures of Protocaryotic Organisms (Bacteria and Cyanophyceae). Springer, 2012.

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40

Fuhs, Georg W. Nuclear Structures of Protocaryotic Organisms (Bacteria and Cyanophyceae). Springer, 2012.

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41

Bacteria And Other Micro Organisms (Agile Rabbit Editions). Pepin Press, 2004.

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42

Wilson, Nancy, Richard Moyer, Jay Hackett, et al. Simple Organisms and Viruses. MacMillan/McGraw-Hill, 1993.

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43

Amyes, Sebastian G. B. Bacteria: A Very Short Introduction. 2nd ed. Oxford University Press, 2022. http://dx.doi.org/10.1093/actrade/9780192895240.001.0001.

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Bacteria: A Very Short Introduction explores the nature of bacteria, which are the most abundant form of life on the planet. The first organisms to evolve, they include forms that can survive the toughest environments, from deep rocks to frozen wastes. No other organisms are as adaptable. We are most familiar with them as agents of disease, but benign bacteria are critical to ecosystems, as well as to human health. Bacteria play a significant role in the environment and in disease. We cannot ignore the growing resistance of bacteria to antibiotics.
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44

Palacios, Rafael, and William E. Newton. Genomes and Genomics of Nitrogen-Fixing Organisms. Springer London, Limited, 2005.

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45

Thomas, Daniel Rh. Other bacterial diseasesPasteurellosis. Oxford University Press, 2011. http://dx.doi.org/10.1093/med/9780198570028.003.0021.

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Pasteurellosis is a zoonosis that occurs worldwide, caused by bacteria of the genus Pasteurella, and other related organisms. Pasteurellosis reported in humans is most frequently caused by the species Pasteurella multocida. In humans, cutaneous infection is most common, but more severe outcomes have been reported, particularly in those with underlying chronic disease. Infection in animals is usually subclinical, but may give rise to a range of clinical symptoms, depending on the host species. Disease in animals usually occurs as a consequence of stress such as overcrowding, chilling, transport
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46

Liu, Dongyou. Molecular Detection of Human Bacterial Pathogens. Taylor & Francis Group, 2011.

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47

Liu, Dongyou. Molecular Detection of Human Bacterial Pathogens. Taylor & Francis Group, 2011.

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48

Liu, Dongyou. Molecular Detection of Human Bacterial Pathogens. Taylor & Francis Group, 2011.

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49

Matthews, Philippa C. Summary of medically important bacteria. Edited by Philippa C. Matthews. Oxford University Press, 2017. http://dx.doi.org/10.1093/med/9780198737773.003.0001.

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This chapter provides a brief summary of a classification system for medically important bacteria, based on a traditional phenotypic approach. The primary focus is on organisms that are significant causes of disease in the tropics and subtropics.
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50

Sheppard, Charles R. C., Simon K. Davy, Graham M. Pilling, and Nicholas A. J. Graham. Microbial, microalgal and planktonic reef life. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198787341.003.0005.

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Microbes, including bacteria, archaea, viruses, fungi, protozoans and microalgae, are the most abundant and arguably the most important members of coral reef communities. They occur in the water column and sediment, and in association with other reef organisms. This chapter describes the abundance, diversity, function and productivity of microbes, with an emphasis on free-living types. They are key to recycling and retention of organic matter via the ‘microbial loop’, and are an important food source for larger reef organisms. The metazoan zooplankton are also described, including larvae of mo
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