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Books on the topic 'Bacterial taxonomy'

Author: Grafiati

Published: 4 June 2021

Last updated: 5 February 2022

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1

Brian, Austin. Modern bacterial taxonomy. Wokingham: Van Nostrand Reinhold, 1986.

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2

1951-, Austin B., ed. Modern bacterial taxonomy. 2nd ed. London: Chapman & Hall, 1993.

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3

G, Priest F., ed. Modern bacterial taxonomy. Wokingham, Berkshire, England: Van Nostrand Reinhold (UK), 1986.

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4

Bauman, Robert W. Microbiology: With diseases by taxonomy. 3rd ed. San Francisco: Benjamin Cummings, 2011.

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5

Bauman, Robert W. Microbiology: With diseases by taxonomy. 2nd ed. San Francisco, Calif: Pearson Education, 2007.

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6

Elizabeth, Machunis-Masuoka, ed. Microbiology: With diseases by taxonomy. 3rd ed. San Francisco: Benjamin Cummings, 2011.

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7

Austin, B., and Kazuo Tsubota. Modern Bacterial Taxonomy. Springer, 1993.

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8

Bauman, Robert. Microbiology with Diseases by Taxonomy. Pearson Education, Limited, 2006.

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9

contributor, Machunis-Masuoka Elizabeth, ed. Microbiology: With diseases by taxonomy. Pearson, 2014.

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10

M, Goodfellow, Jones D, Priest F. G, and Society for General Microbiology, eds. Computer-assisted bacterial systematics. London: Published for the Society for General Microbiology by Academic Press, 1985.

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11

Microbiology with Diseases by Taxonomy: Study Guide, 2nd Edition. 2nd ed. Benjamin-Cummings Publishing Company, 2006.

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12

Lactic Acid Bacteria Biodiversity and Taxonomy. Wiley-Blackwell, 2013.

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13

Wood, Brian J. B., and Wilhelm H. Holzapfel. Lactic Acid Bacteria: Biodiversity and Taxonomy. Wiley & Sons, Incorporated, John, 2014.

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Wood, Brian J. B., and Wilhelm H. Holzapfel. Lactic Acid Bacteria: Biodiversity and Taxonomy. Wiley & Sons, Incorporated, John, 2014.

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15

Birtles, Richard. Other bacterial diseasesAnaplasmosis, ehrlichiosis and neorickettsiosis. Oxford University Press, 2011. http://dx.doi.org/10.1093/med/9780198570028.003.0020.

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In 2001, taxonomic reorganization of the bacterial genera Anaplasma, Ehrlichia, Cowdria and Neorickettsia resulted in the transfer of numerous species between these taxa, and the renaming of the transferred species to reflect their new taxonomic position (Dumler et al. 2001). Among the members of these genera, there are four species of established zoonotic importance, which are therefore the subject of this chapter. Two of these species were affected by the changes outlined above.Although these four species possess markedly different ecologies, they share the fundamental biological character of being obligate intracellular bacteria that reside within vacuoles of eukaryotic cells. This lifestyle underlies their fastidious nature in the laboratory and hence our limited knowledge of their biology and pathogenicity. Nonetheless, despite this shortfall, all four are associated with diseases of established or emerging importance: E. chaffeensis provokes human monocytic ehrlichiosis (HME), E. ewingii causes human ewingii ehrlichiosis (HEE), A. phagocytophilum causes human granulocytic anaplasmosis (HGA), N. sennetsu is the agent of sennetsu neorickettsiosis.The first three pathogens are transmitted by hard (ixodid) ticks and are encountered across the temperate zones of the northern hemisphere (and maybe beyond), although the vast majority of human infections caused by them are currently reported in the USA. There, HME and HGA are second only to Lyme disease (caused by Borrelia burgdorferi) in terms of public health significance. Furthermore, given that there is evidence of increasing population sizes and changing distributions for ixodid species (Scharlemann et al. 2008), it is not unreasonable to predict that the infections they transmit will present an increased medical burden in the future. N. sennetsu remains an enigmatic pathogen; case reports remain scarce, but serological surveys suggest high levels of exposure. The widespread consumption of raw fish across east Asia presents specific infection risks to this region, and an increased awareness that sennetsu neorickettsiosis is among the infections that can be acquired from this source is required before its public health importance can be accurately assessed.

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16

Taxonomic Guide to Infectious Diseases. Academic Press, 2012.

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17

Kirchman, David L. Community structure of microbes in natural environments. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0004.

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Community structure refers to the taxonomic types of microbes and their relative abundance in an environment. This chapter focuses on bacteria with a few words about fungi; protists and viruses are discussed in Chapters 9 and 10. Traditional methods for identifying microbes rely on biochemical testing of phenotype observable in the laboratory. Even for cultivated microbes and larger organisms, the traditional, phenotype approach has been replaced by comparing sequences of specific genes, those for 16S rRNA (archaea and bacteria) or 18S rRNA (microbial eukaryotes). Cultivation-independent approaches based on 16S rRNA gene sequencing have revealed that natural microbial communities have a few abundant types and many rare ones. These organisms differ substantially from those that can be grown in the laboratory using cultivation-dependent approaches. The abundant types of microbes found in soils, freshwater lakes, and oceans all differ. Once thought to be confined to extreme habitats, Archaea are now known to occur everywhere, but are particularly abundant in the deep ocean, where they make up as much as 50% of the total microbial abundance. Dispersal of bacteria and other small microbes is thought to be easy, leading to the Bass Becking hypothesis that “everything is everywhere, but the environment selects.” Among several factors known to affect community structure, salinity and temperature are very important, as is pH especially in soils. In addition to bottom-up factors, both top-down factors, grazing and viral lysis, also shape community structure. According to the Kill the Winner hypothesis, viruses select for fast-growing types, allowing slower growing defensive specialists to survive. Cultivation-independent approaches indicate that fungi are more diverse than previously appreciated, but they are less diverse than bacteria, especially in aquatic habitats. The community structure of fungi is affected by many of the same factors shaping bacterial community structure, but the dispersal of fungi is more limited than that of bacteria. The chapter ends with a discussion about the relationship between community structure and biogeochemical processes. The value of community structure information varies with the process and the degree of metabolic redundancy among the community members for the process.

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18

Taberlet, Pierre, Aurélie Bonin, Lucie Zinger, and Eric Coissac. DNA metabarcode choice and design. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198767220.003.0002.

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Chapter “DNA metabarcode choice and design” develops the properties of the ideal metabarcode in a given context, including conservation of the primer annealing regions and resolution power across the target taxonomic group of interest. It also highlights the experimental constraints influencing the choice of a metabarcode in practice. A detailed tutorial illustrates how to design and test metabarcoding primers in silico with the programs ecoPrimers, ecoPCR, and the software suite OBITools. Command lines and example files are provided to design and test universal metabarcoding primers for Bacteria. Chapter 2 also gives statistics about the taxonomic resolution and primer conservation of more than 60 metabarcodes available for DNA metabarcoding analysis of a wide range of taxonomic groups.

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19

López Lastra, Claudia Cristina, and Juan José García, eds. Patología de insectos. Editorial de la Universidad Nacional de La Plata (EDULP), 2021. http://dx.doi.org/10.35537/10915/123543.

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El material que se presenta en este libro es una actualización de los protocolos de laboratorio en lo que respecta a los patógenos de insectos: virus, bacterias, hongos, protozoos y nematodes. El objetivo principal del libro ha sido reunir toda la información para dar a conocer el estado actual del estudio de los patógenos de insectos, su taxonomía, métodos diagnósticos y enfoques para el uso en control microbiano de insectos plaga y vectores.

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20

Angelakis, Emmanouil, and Didier Raoult. Scrub typhus. Oxford University Press, 2011. http://dx.doi.org/10.1093/med/9780198570028.003.0013.

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Bacteria of the genus Rickettsia are obligate intracellular rods that retained basic fuchsin when stained by the method of Gimenez. This genus has long been used as a generic term of small intracellular bacteria. However, taxonomic progress made over the last years has deeply modified the definition of “rickettsia”. As a result, in 1995 the position of R. tsutsugamushi has reclassified from the genus Rickettsia into a separate new genus, Orientia (Tamura et al. 1995).Scrub typhus, also known as ‘tsutsugamushi fever’, occurs only in Asia and is a chigger-borne zoonosis. The disease is acute, febrile, potentially fatal and has been known for centuries in China where it was probably described as early as in the fourth century BC (Parola and Raoult 2006). These last years this infection has been re-emerging because of descriptions of strains of O. tsutsugamushi with reduced susceptibility to antibiotics and of the surprising interactions between scrub typhus and the human immunodeficiency virus (HIV). It is estimated that more than a million cases of scrub typhus are transmitted annually in Asia and more than a billion people are at risk (Rosenberg 1997).

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21

Kirchman, David L. Introduction. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0001.

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The goal of this chapter is to introduce the field of microbial ecology and some terms used in the rest of the book. Microbial ecology, which is the study of microbes in natural environments, is important for several reasons. Although most are beneficial, some microbes cause diseases of higher plants and animals in aquatic environments and on land. Microbes are also important because they are directly or indirectly responsible for the food we eat. They degrade pesticides and other pollutants contaminating natural environments. Finally, they are important in another “pollution” problem: the increase in greenhouse gases such as carbon dioxide and methane in the atmosphere. Because microbes are crucial for many biogeochemical processes, the field of microbial ecology is crucial for understanding the effect of greenhouse gases on the biosphere and for predicting the impact of climate change on aquatic and terrestrial ecosystems. Even if the problem of climate change were solved, microbes would be fascinating to study because of the weird and wonderful things they do. The chapter ends by pointing out the difficulties in isolating and cultivating microbes in the laboratory. In many environments, less than one percent of all bacteria and other microbes can be grown in the laboratory. The cultivation problem has many ramifications for identifying especially viruses, bacteria, and archaea in natural environments, and for connecting up taxonomic information with biogeochemical processes.

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