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Relevant bibliographies by topics / Barcoding gap

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Academic literature on the topic 'Barcoding gap'

Author: Grafiati

Published: 3 June 2025

Last updated: 31 July 2025

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Journal articles on the topic "Barcoding gap"

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Mu, Yawen, Chao Song, Jianghua Yang, Yong Zhang, and Xiaowei Zhang. "Next-Generation DNA Barcoding for Fish Identification Using High-Throughput Sequencing in Tai Lake, China." Water 15, no. 4 (2023): 774. http://dx.doi.org/10.3390/w15040774.

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Tai Lake, an important biodiversity hotspot of the lower reaches of the Yangtze River in China, possesses its own characteristic fish fauna. Barcoding on native species is important for species identification and biodiversity assessment with the emerged molecular-based method, such as environmental DNA (eDNA) metabarcoding. Here, DNA-barcoding coupled with high-throughput sequencing (HTS) and traditional Sanger sequencing were introduced to barcoding 180 specimens belonging to 33 prior morphological species, including the most majority of fish fauna in Tai Lake. HTS technology, on the one hand

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Mondejar, Eddie P., and Olga M. Nuñeza. "DNA Barcodes of Pholcid Spiders (Araneae : Pholcidae) in Bukidnon and Camiguin, Philippines." Asian Journal of Conservation Biology 7, no. 2 (2018): 101–5. https://doi.org/10.5281/zenodo.8207347.

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DNA barcoding is a global initiative to standardize species identification of every living organism. This study aims to examine the effectiveness of DNA barcoding in species identification using 61 CO1 sequences from 12 species of pholcid spiders. CO1 barcodes of pholcid spiders demonstrate 95.08% diagnostic effectiveness as shown in clusters of neighbor-joining (NJ) tree. Barcode Gap Analysis (GBA) of 12 pholcid species exhibits the presence of barcode gap, with mean distance to nearest neighbor species of 11.27% (range 0.16-19.69%). Distance Analysis (DA) also revealed that mean intraspecifi

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Powell, Robyn F., Anthony R. Magee, and James S. Boatwright. "Decoding ice plants: challenges associated with barcoding and phylogenetics in the diverse succulent family Aizoaceae." Genome 61, no. 11 (2018): 815–21. http://dx.doi.org/10.1139/gen-2018-0055.

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Aizoaceae is the largest succulent plant family in the world, including in excess of 1800 species. Despite its richness, a large proportion of its taxa are listed as data deficient and as such, has been identified as the top priority for taxonomic research in South Africa. Limitations to accurate taxonomic identification of taxa in the family may be partly attributed to the degree of technical knowledge required to identify taxa in the Aizoaceae. DNA barcoding may provide an alternative method of identification; however, the suitability of commonly used gene regions has not been tested in the

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Aliabadian, Mansour, Vincent Nijman, Ahmad Mahmoudi, Mehdi Naderi, Ronald Vonk, and Miguel Vences. "ExcaliBAR: a simple and fast software utility to calculate intra- and interspecific distances from DNA barcodes." Contributions to Zoology 83, no. 1 (2014): 79–84. http://dx.doi.org/10.1163/18759866-08301004.

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In the context of DNA Barcoding, sequences of standard marker genes for thousands and potentially millions of individuals and species are becoming available, requiring ever more efficient bioinformatic environments and software algorithms for analysis. We here present ExcaliBAR (Extraction, Calculation, Barcoding), a user-friendly software utility to facilitate one important initial step in DNA barcoding analyses, namely the determination of the barcoding gap between pairwise genetic distances among and within species, based on original distance matrices computed by MEGA software. In addition,

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Qian, Zhi-Hao, Justus Mulinge Munywoki, Qing-Feng Wang, Itambo Malombe, Zhi-Zhong Li, and Jin-Ming Chen. "Molecular Identification of African Nymphaea Species (Water Lily) Based on ITS, trnT-trnF and rpl16." Plants 11, no. 18 (2022): 2431. http://dx.doi.org/10.3390/plants11182431.

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The genus Nymphaea L. (water lily) is the most diverse genus in the family Nymphaeaceae, with more than 50 species worldwide, including 11 species distributed in Africa. The complex and variable morphology of Nymphaea makes it extremely difficult to accurately identify species based on morphological characteristics alone. DNA barcoding has the potential to identify species accurately. In this study, 158 Nymphaea populations from seven African countries were collected for species identification by ITS, trnT-trnF and rpl16. Additionally, the three candidate DNA barcodes were evaluated for geneti

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Kannan, Adrian, Suganiya Rama Rao, Shyamala Ratnayeke, and Yoon-Yen Yow. "The efficiency of universal mitochondrial DNA barcodes for species discrimination of Pomacea canaliculata and Pomacea maculata." PeerJ 8 (April 1, 2020): e8755. http://dx.doi.org/10.7717/peerj.8755.

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Invasive apple snails, Pomacea canaliculata and P. maculata, have a widespread distribution globally and are regarded as devastating pests of agricultural wetlands. The two species are morphologically similar, which hinders species identification via morphological approaches and species-specific management efforts. Advances in molecular genetics may contribute effective diagnostic tools to potentially resolve morphological ambiguity. DNA barcoding has revolutionized the field of taxonomy by providing an alternative, simple approach for species discrimination, where short sections of DNA, the c

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Zhou, Tingting, Wei Jiang, Hongzhu Wang, and Yongde Cui. "DNA barcoding of Naididae (Annelida, Oligochaeta), based on cytochrome C oxidase gene and ITS2 region in China." Biodiversity Data Journal 9 (December 14, 2021): e73556. https://doi.org/10.3897/BDJ.9.e73556.

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Exploring the effectiveness of DNA barcoding in species identification is a prerequisite for biodiversity conservation and environmental monitoring. Aquatic oligochaetes could serve as excellent indicators in aquatic monitoring programmes. However, few studies have examined the effectiveness of DNA barcoding in these specific organisms. The mitochondrial cytochrome C oxidase (COI) gene of 83 specimens belonging to 40 species of 18 genera were sequenced in this study. The results showed that there was a barcode gap between species of Naididae and the intraspecific genetic distances of each spec

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BILGIN, R., M. A. UTKAN, E. KALKAN, S. U. KARHAN, and M. BEKBÖLET. "DNA barcoding of twelve shrimp species (Crustacea: Decapoda) from Turkish seas reveals cryptic diversity." Mediterranean Marine Science 16, no. 1 (2014): 36. http://dx.doi.org/10.12681/mms.548.

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DNA barcoding is a useful tool for the identification and potential discovery of new species. In this study, DNA barcoding was employed by sequencing the mitochondrial cytochrome oxidase subunit I gene (COI) to characterize the genetic diversity of 12 shrimp species inhabiting Turkish coastal waters and, when possible, to compare with the genetic data available from different parts of the Mediterranean and eastern Atlantic. This study also comprises the first DNA barcoding study performed in the Turkish Seas using COI. A total of 40 shrimp specimens were collected and analyzed from 9 sites. Ge

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Laini, A., S. Fenoglio, and T. Bo. "DNA barcoding reference libraries of Italian Plecoptera: a gap analysis." European Zoological Journal 91, no. 1 (2024): 162–71. http://dx.doi.org/10.1080/24750263.2023.2298977.

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Le Cadre, Jéhan, Finn Luca Klemp, Miklós Bálint, Stefan Scheu, and Ina Schaefer. "Applicability and perspectives for DNA barcoding of soil invertebrates." PeerJ 12 (July 24, 2024): e17709. http://dx.doi.org/10.7717/peerj.17709.

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Belowground invertebrate communities are dominated by species-rich and very small microarthropods that require long handling times and high taxonomic expertise for species determination. Molecular based methods like metabarcoding circumvent the morphological determination process by assigning taxa bioinformatically based on sequence information. The potential to analyse diverse and cryptic communities in short time at high taxonomic resolution is promising. However, metabarcoding studies revealed that taxonomic assignment below family-level in Collembola (Hexapoda) and Oribatida (Acariformes)

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Book chapters on the topic "Barcoding gap"

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Phillips, Jarrett D., Cortland K. Griswold, Robert G. Young, Nicolas Hubert, and Robert H. Hanner. "A Measure of the DNA Barcode Gap for Applied and Basic Research." In DNA Barcoding. Springer US, 2024. http://dx.doi.org/10.1007/978-1-0716-3581-0_24.

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Borman, Andrew M., and Elizabeth M. Johnson. "Sequence-based Identification and Classification of Fungi." In Trends in the systematics of bacteria and fungi. CABI, 2021. http://dx.doi.org/10.1079/9781789244984.0198.

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Abstract This book chapter describes the advantages and limitations of the ITS Region as a universal barcode for fungal identification. The ITS region offers several practical advantages as a universal fungal barcode region. The region encompasses segments that permit resolution at different taxonomic levels as it includes the highly conserved 5.8S rRNA gene, the moderately rapidly evolving ITS2 region and the rapidly evolving ITS1 region, flanked by the highly conserved SSU and LSU genes which permit design of PCR primers that are almost panfungal. Over the last two decades the sequence-based

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Conference papers on the topic "Barcoding gap"

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Dziawgo, W., E. Masiero, and T. Sgamma. "Authentication of Stephania tetrandra commercial products using DNA mini-barcoding." In GA – 69th Annual Meeting 2021, Virtual conference. Georg Thieme Verlag, 2021. http://dx.doi.org/10.1055/s-0041-1736864.

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Baskaran, Vikraman, and Denny Nguyen. "Architectural Analysis of RFID Integration in Medical Device Logistics: A Healthcare Information Systems Study." In Human Interaction and Emerging Technologies (IHIET-FS 2025): Future Systems and Artificial Intelligence Applications. AHFE International, 2025. https://doi.org/10.54941/ahfe1005959.

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This study presents a comprehensive architectural framework for implementing Radio Frequency Identification (RFID) technology in medical device logistics, addressing the unique challenges of healthcare supply chain management. The healthcare sector's stringent requirements for device tracking, sterilization protocols, and quality assurance measures create a complex environment where traditional RFID implementation approaches often prove insufficient. Through a detailed case study of a third-party logistics provider managing two distinct medical device accounts, we analyze the technical, operat

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Baskaran, Vikraman, and Denny Nguyen. "Architectural Analysis of RFID Integration in Medical Device Logistics: A Healthcare Information Systems Study." In Human Interaction and Emerging Technologies (IHIET-FS 2025): Future Systems and Artificial Intelligence Applications. AHFE International, 2025. https://doi.org/10.54941/ahfe10059725959.

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This study presents a comprehensive architectural framework for implementing Radio Frequency Identification (RFID) technology in medical device logistics, addressing the unique challenges of healthcare supply chain management. The healthcare sector's stringent requirements for device tracking, sterilization protocols, and quality assurance measures create a complex environment where traditional RFID implementation approaches often prove insufficient. Through a detailed case study of a third-party logistics provider managing two distinct medical device accounts, we analyze the technical, operat

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Scotti, F., P. Mali, E. Masiero, et al. "Hypericum perforatum – a comparison of commercial samples using DNA-barcoding and chemical approaches." In GA 2017 – Book of Abstracts. Georg Thieme Verlag KG, 2017. http://dx.doi.org/10.1055/s-0037-1608586.

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Lockie-Williams, C., C. Gkouva, L. Gibson, and C. Howard. "DNA barcoding analysis: quality control of published DNA sequences." In 67th International Congress and Annual Meeting of the Society for Medicinal Plant and Natural Product Research (GA) in cooperation with the French Society of Pharmacognosy AFERP. © Georg Thieme Verlag KG, 2019. http://dx.doi.org/10.1055/s-0039-3399756.

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Corsello, Steven M., Ryan D. Spangler, Rohith T. Nagari, et al. "Abstract 2948: Novel cell line barcoding method reveals tepoxalin as a selective drug against MDR1-high tumor cells." In Proceedings: AACR Annual Meeting 2019; March 29-April 3, 2019; Atlanta, GA. American Association for Cancer Research, 2019. http://dx.doi.org/10.1158/1538-7445.sabcs18-2948.

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Corsello, Steven M., Ryan D. Spangler, Rohith T. Nagari, et al. "Abstract 2948: Novel cell line barcoding method reveals tepoxalin as a selective drug against MDR1-high tumor cells." In Proceedings: AACR Annual Meeting 2019; March 29-April 3, 2019; Atlanta, GA. American Association for Cancer Research, 2019. http://dx.doi.org/10.1158/1538-7445.am2019-2948.

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Chenchik, Alex, Paul Diehl, and Mikhail Makhanov. "Abstract 3426: Combining cell barcoding and CRISPR sgRNA libraries with targeted gene expression for single-cell genetic analysis of tumor metastasis." In Proceedings: AACR Annual Meeting 2019; March 29-April 3, 2019; Atlanta, GA. American Association for Cancer Research, 2019. http://dx.doi.org/10.1158/1538-7445.am2019-3426.

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Chenchik, Alex, Paul Diehl, and Mikhail Makhanov. "Abstract 3426: Combining cell barcoding and CRISPR sgRNA libraries with targeted gene expression for single-cell genetic analysis of tumor metastasis." In Proceedings: AACR Annual Meeting 2019; March 29-April 3, 2019; Atlanta, GA. American Association for Cancer Research, 2019. http://dx.doi.org/10.1158/1538-7445.sabcs18-3426.

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Zhang, Ze-yan, Ravesanker Ezhilarasan, Yingwen Ding, et al. "Abstract 4698: Development of a CRISPR-Cas9D10Atargetable, high-complexity, single-cell barcoding approach for capture of treatment resistant subclones from heterogeneous cancers." In Proceedings: AACR Annual Meeting 2019; March 29-April 3, 2019; Atlanta, GA. American Association for Cancer Research, 2019. http://dx.doi.org/10.1158/1538-7445.sabcs18-4698.

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