Dissertations / Theses on the topic 'Beans – Diseases and pests – Kenya'

Bibliography: leaves 81-100. Entry of inoculum into a crop and disease development in the crop cannot be prevented because spores are airborne and there is a lack of highly resistant varieties. This makes complete control of chocolate spot unlikely. It should however, be possible to improve current levels of disease control through the integration of the factors identified in the study.

Bibliography: leaves 111-120. This study investigated various aspects of genetic resistance in fava beans to Ascochta blight (A. fabae) with the objective to facilitate an efficient breeding strategy for long-term control. Pathogenic variability of A. fabae was found to be high, as was genetic variation between resistant fava bean accessions. A number of alternative resistance genes to that of Ascot cultivar were identified.

The effects of intraspecific and interspecific competition, host plant, and prior host plant experience on fecundity, rate of oviposition and mortality of adults and larval survival of Delia radicum Bouche (Cabbage Maggot (CM)), D. antiqua Meigen (Onion Maggot (OM)), and D. platura Meigen (Seed Corn Maggot (SCM)), were studied on cabbage, onion and bean plants.
An optimum density for maximum fecundity per female was observed when the four experimental densities were compared. This optimum density was higher on host than on non-host plants. CM females were host specific and did not oviposit on non-host plants. Rates of oviposition and mortality over a 30-day period were calculated for each density. The rate of oviposition was slower at higher densities on host plants for CM, OM and SCM. The rate of mortality increased at the highest density for CM (cabbage), OM (bean) and SCM (cabbage), but remained unaffected for OM on onion and cabbage and for SCM on onion and bean, when densities were compared. For OM, a delay in the rate of oviposition and mortality on cabbage (non-host plant) when compared with onion (host plant), suggests that cabbage was not as readily accepted as an oviposition site. Interspecific competition experiments at six density ratio's of SCM:OM indicated increased fecundity, or an increase in the rate of oviposition for OM, at the lower densities when single and mixed species were compared. For SCM no effects on fecundity were recorded, but the rate of oviposition was slower and rate of mortality faster at the lowest density in the presence of OM. Similar studies with SCM and CM showed no such effects of competition.
Host plant exposure of SCM females during the pre-oviposition period resulted in a delay in initial acceptance of subsequent host plants as oviposition sites. This happened only when females were exposed to a secondary host during the pre-oviposition period. Once oviposition began, host discrimination ceased and a switch in oviposition sites to the preferred host did not alter the rate of oviposition. In CM, the rate of larval development increased at density 6 (optimum density). Above this density a decrease in the rate of development and a significant reduction in pupal weight was observed. Time required for fly emergence was not affected by increasing larval densities.

Survey of crops of common bean (Phaseolus vulgaris L.) in Sonora, Mexico revealed the presence of two isometric viruses and one flexuous rod virus on the basis of host reaction, particle morphology, serology and physico-chemical properties. The isometric viruses were identified as Bean Southern Mosaic Virus (BSMV) and Cowpea Chlorotic Mottle Virus (CCMV); the flexuous rod virus was identified as Bean Common Mosaic Virus (BCMV). Using bean cultivar differentials, two strains of the potyvirus BCMV were identified, NY-15 and a previously undescribed strain designated YV-1. Host range, serological tests, and RNA electrophoresis indicated that the Sonoran BSMV cultures are similar to BSMV-strain A. Serology and RNA-electrophoresis indicated that the Sonoran CCMV isolates are identical to CCMV-strain A. BSMV and CCMV were always isolated as a mixture from seed lots and from field collected bean tissue. BCMV occurred alone or in mixed infections with BSMV and CCMV. BCMV was seed transmitted with an average efficiency of 58 percent. The BSMV-CCMV mixture was transmitted with an efficiency of 6 percent. BSMV and CCMV were seed transmitted together, but separate transmission of BSMV or CCMV was not detected. Commercial seed lots from two major bean growing regions of Sonora (Hermosillo Coast, Sonora River) were contaminated with the BSMV-CCMV mixture but not with BCMV. The average contamination level was 13 percent. Two common weeds present in Sonoran agricultural areas were found to be potential alternate hosts of CCMV. Both Sisymbrium irio L. and Melilotus indica L. were infected systemically, although the infection in M. indica was latent. Potential losses due to Sonoran bean viruses were measured in greenhouse experiments with the cultivar Pinto 111. BCMV strains caused a 29.4 to 60.1% reduction, whereas BSMV-CCMV mixtures induced a 22.5 to 74.6% yield reduction. A synergism occurred between the BSMV-CCMV mixture and BCMV resulting in more severe symptoms and a yield reduction of 92.7%. Synergistic effects were also observed between BSMV and CCMV. Actual yield reduction resulted from impaired flower production and, consequently, reduced pod production. Significant effects on plant tissue production, flower fertilization and seed quality were not observed. Cowpea chlorotic mottle virus infected mung bean (Vigna radiata (L.) Wilczek) a previously unreported host. Infection of mung bean by BSMV was only possible when CCMV was present in the inoculum. Both BSMV and CCMV could be isolated from symptomatic plants infected with the BSMV-CCMV mixture, however, symptoms on mung bean were unchanged from infection by CCMV alone.

Fundação Araucária, CNPQ
Plantas daninhas competem com as cultivadas e dentre as influências negativas desse convívio está a redução da produtividade das culturas. O controle químico é a principal forma de gestão das infestantes na cultura do feijão (Phaseolus vulgaris L.). Sua eficácia depende de uma série de fatores, entre eles: condições ambientais (em função dos horários de aplicação) no momento da aspersão do herbicida e doses utilizadas. Um programa de pesquisa foi desenvolvido no curso de Agronomia da UTFPR, Pato Branco, PR, durante a safra 2010/11 com os objetivos gerais de analisar o impacto de horários de aplicação (e por consequência das variáveis ambientais) e de doses de fluazifop-p-butyl e de fomesafen sobre: o desempenho desses herbicidas no controle de plantas daninhas mono e dicotiledôneas, respectivamente; a seletividade do feijoeiro ao fomesafen e; a lucratividade da lavoura de feijão. As variáveis ambientais, de acordo com o horário do dia ou a época do ano em que os produtos foram aplicados, influenciaram no controle das infestantes. Fluazifop-p-butyl teve atividade favorecida quando aspergido às 06:00h, com umidade relativa do ar e ângulo foliar das gramíneas influenciando de maneira mais significativa no resultado. Para esse mesmo herbicida, aplicação noturna foi eficaz em mitigar os efeitos negativos da aplicação vespertina. O desempenho de fomesafen no controle das plantas daninhas dicotiledôneas foi máximo quando o produto foi aspergido às 11:00h e às 16:00h. Nesse caso, a irradiância e a temperatura do ar foram os principais determinantes da eficácia do herbicida. As doses de fluazifop-p-butyl + fomesafen que propiciaram maior controle da infestação resultaram em aumento da produtividade do feijoeiro e da rentabilidade da produção. Em alguns casos, a maximização da renda líquida foi obtida com dose menor do que a recomendada no rótulo do produto e aquela necessária para a obtenção da máxima eficácia do produto. Fomesafen provocou toxicidade nas plantas de feijão, as quais recuperaram-se das injúrias com o decorrer do tempo. O grau de fitointoxicação foi mais acentuado com doses elevadas do produto e quando esse foi aspergido às 11:00h e às 16:00h. Nesses horários, a temperatura do ar e a irradiância estavam mais acentuadas. Pode-se sintetizar que a eficácia no controle das plantas infestantes e a toxicidade dos herbicidas ao feijoeiro foram dependentes dos herbicidas utilizados, das condições ambientais em função do horário do dia em que os herbicidas foram aplicados e das doses utilizadas. A escolha correta do horário e da dose de aplicação favorece a eficiência do controle das plantas daninhas, minimiza os prejuízos à cultura em função da competição e eleva a lucratividade da lavoura.
The weeds compete with the cultivated crops and among the negative effects of this interaction is the reduction of the crop yields. The chemical method is the main weed control technic in the common bean crop (Phaseolus vulgaris L.). The efficacy of the herbicides depends on a number of factors, including: environmental conditions (in function of the time of application) at the moment of spraying of the herbicide and doses used. A research program was developed on the Agronomy course of UTFPR, Pato Branco, PR, during the 2010-11 with the main objectives to evaluate the impact of the application time (and therefore environmental variables) and doses of fluazifop-p-butyl and fomesafen on the: performance of these herbicides in the control of mono and dicotyledonous weeds, respectively; selectivity of bean crop to fomesafen; and the lucrativity of the common bean crop. The environmental variables, according to the time of day or season of year in which herbicides were applied, influence the control of weeds. Fluazifop-p-butyl activity has been favored when sprayed at 06:00h. The relative humidity and grass leaf angle were the factors most important affecting this herbicide performance. For this same compound, night application has been effective to mitigate the negative effects of the afternoon application. The performance of fomesafen to control broadleaf weeds has been maximum when the product was sprayed at 11:00h and 16:00h. In this case, the irradiance and the air temperature have been the main factors to affect the herbicide efficacy. The doses of fluazifop-p-butyl + fomesafen which allowed best weed control have increased grain yield and profitability of the common bean crop production. In some cases, the maximum net return has been obtained with a dose lower than that needed for maximum herbicide efficacy. Fomesafen has injured the common bean plants, but they have recovered with time. The degree of phytointoxication has increased at high fomesafen doses and when it has been sprayed at 11:00h and 16:00h. During these times, the air temperature and irradiance were the highest. It can be summarized that the efficacy on weed control and on the common bean injury was dependent on the herbicide used, on the environmental conditions during the time of the herbicide spray, and on the rates applied. The selection of the correct time of the day and rate of application can optimize the weed control, can reduce the crop yield losses due to competition, and can optimize the crop profitability.

A cultura do feijoeiro apresenta grande importância econômica para o Brasil e especificamente para a região do Sudoeste do Paraná, onde é cultivado principalmente em pequenas e médias propriedades. Constitui-se em um dos alimentos mais ricos consumido pelo povo brasileiro, principalmente para as populações mais pobres. É imprescindível o estudo cientifico dos sistemas de produção e o avanço tecnológico para aumentar sua produtividade e rentabilidade. Entre os gargalos limitantes à cultura, está a necessidade de estudar melhor os níveis populacionais de plantas daninhas que justificam o seu controle atendendo a critérios econômicos, o que resultaria em maior segurança para tomada de decisões de controle e, conseqüentemente, maior economia aos produtores rurais. Nesse contexto, realizou-se um experimento na área experimental da Universidade Tecnológica Federal do Paraná, Campus Pato Branco, com objetivo de verificar o nível de dano econômico e competitivo de Euphorbia heterophylla sob diferentes densidades e épocas de semeadura desta infestante em relação à cultura do feijoeiro. O experimento foi conduzido a campo em delineamento de blocos ao acaso, em parcelas subdivididas, com quatro repetições. Nas parcelas principais foram locadas oito densidades esperadas de E. heterophylla (0, 6, 10, 17, 29, 49, 83 e 142 pl m-2) e nas subparcelas duas épocas de semeadura de E. heterophylla (12 dias antes da semeadura do feijão e simultaneamente a cultura). Foram realizadas avaliações das características agronômicas das plantas de feijão e morfológicas de E. heterophylla e feijão durante o período de desenvolvimento e no momento da colheita da cultura. No cálculo das perdas de rendimento foi empregado o modelo da hipérbole retangular e pelo método de segmentação linear, sendo extraídos os parâmetros “i” (perda percentual por cada planta de E. heterophylla), que foram empregados no cálculo do nível de dano econômico. A antecipação da semeadura de E. heterophylla, bem como o incremento na densidade acarretaram redução da produtividade da cultura do feijão, devido principalmente à redução do número de legumes por planta. A interferência de plantas de E. heterophylla com a cultura do feijão determinou redução da estatura de plantas, índice de área foliar, massa seca, número de trifólios, número de ramificações produtivas, mas houve aumento da altura de inserção de legumes da cultura. A semeadura antecipada de E. heterophylla proporciona maior desenvolvimento desta espécie em relação à época de semeadura simultânea com a cultura do feijão, refletindo-se no aumento da área foliar, da massa seca e da cobertura do solo pela espécie daninha. A perda percentual por planta daninha pode ser estimada adequadamente através dos diferentes modelos utilizados. Tanto o modelo hiperbólico quanto o linear indicam maior perda percentual quando a semeadura de E. heterophylla ocorre antecipadamente à cultura do feijão comum. O modelo hiperbólico superestima os valores de nível crítico de dano em relação ao modelo linear. O aumento na perda de rendimento por unidade de planta daninha, rendimento da cultura, eficiência do herbicida e no valor do produto colhido ocasionam diminuição dos valores dos níveis de dano econômico. No entanto, o aumento do custo de controle de plantas de E. heterophylla aumenta os valores do nível de dano econômico.
Bean crop has great economic importance to Brazil and specifically for the South West of Parana, where it is grown mainly in small and medium farms. It constitutes one of the richest foods consumed by the Brazilian people, especially for the poorest populations. In this context, the scientific study of production systems and technological advances are essential to increase productivity and profitability. Among the factors that limit crop development, is the need to better understand the weed population levels that justify its control attending economic aspects, which would result in better control decision-making and, consequently, lower costs to farmers. In this context, an experiment was carried out at the experimental area of the Federal Technologic University of Paraná, Campus Pato Branco, in order to verify the economic injury level and competitive potential of the Euphorbia heterophylla under different sowing dates and densities of this weed in relation to the bean crop. The experiment was laid out as a randomized blocks arranged in a split-plots design with four replications. At the main plots were located eight expected densities of E. heterophylla (0, 6, 10, 17, 29, 49, 83 and 142 pl m-2) and at the subplots two sowing dates of E. heterophylla (12 days before bean sowing and at the crop sowing day). Evaluations were made on the agronomic characteristics of the bean plants during its development and at the harvest period. Moreover, morphological characteristics of the E. heterophylla and the beans were also evaluated at the same periods. To determine the crop yield losses was used the hyperbolic model and the linear segmentation method, and extracted the parameters "i" (percentage loss per plant of E. heterophylla), which were used in calculating the economic injury level. E. heterophylla sowed before the crop as well as its density increase led to reduced productivity of the bean, mainly due to reduction in the number of pods per plant. Moreover, the interference of the E. heterophylla on the bean crop resulted in lower plants, reduced leaf area index, lower dry weight, less number of leaves, less number of productive branches, however resulted in shorter height of the pods insertion on the crop. Early sowing of E. heterophylla results in better development of the weed specie in relation to the sowing data were both, weed and crop are sowed at the same day, resulting on higher leaf area, higher dry matter production and soil cover by the weed species. Percentage of yield losses due to the weed plant presence could be adequately estimated through the different models used. Both the linear and the hyperbolic model indicate a higher percentage loss when the sowing of E. heterophylla occurs before than the common bean crop. The hyperbolic model overestimates the values of the critical level of damage in relation to the linear model. Increases on the yield losses per unit weed, lower crop yield, lower herbicide efficiency and lower value of the harvested product resulted in smaller values of the economic injury level. Although, as the E. heterophylla control cost increase, the economic injury level also increases.

CAPES
O crestamento bacteriano comum, causado por Xanthomonas axonopodis pv. phaseoli, é uma das principais doenças da cultura do feijoeiro. Em busca por alternativas no controle de doenças em plantas, o uso de eliciadores/indutores de resistência tem sido explorado. Desta forma, o objetivo deste trabalho foi verificar a eficiência dos eliciadores harpina e acibenzolar-S-metílico na indução de mecanismos de defesa em plantas de feijoeiro (Phaseolus vulgaris L.) ao crestamento bacteriano comum, causado por X. axonopodis pv. phaseoli, avaliandose possíveis alterações no processo de trocas gasosas e ativação das principais enzimas envolvidas na defesa vegetal - peroxidase, superóxido dismutase, além de proteínas e fenóis. Foram utilizadas sementes dos cultivares IAPAR 31 e IPR Colibri. Depois de emergidas as primeiras folhas trifoliadas na fase vegetativa (V3) as plantas, foram tratadas com os eliciadores acibenzolar-S-metílico, harpina e água destilada (controle). Sete dias após a primeira aplicação dos eliciadores, foi inoculado o patógeno nas folhas do feijoeiro. A avaliação da severidade foi realizada a cada 10 dias sendo a primeira avaliação realizada 15 dias após a inoculação do patógeno. As leituras de fotossíntese foram realizadas 40 dias após a inoculação quando os sintomas e danos da doença demonstravam-se estabelecidos. Para a realização das análises bioquímicas, amostras de tecidos foliares de cada tratamento foram coletadas 24 horas antes, 24, 48 e 72 horas após a aplicação dos eliciadores. Também, foram determinados o rendimento e seus componentes em ambas as cultivares.A aplicação de ASM e harpina proporcionou redução na severidade da doença do crestamento bacteriano comum nas plantas de feijoeiro da cultivar IPR-Colibri e a mesma tendência foi observada para a cultivar IAPAR 31 tratada com ASM. As plantas da cultivar IAPAR 31 tratadas com o eliciador ASM, apresentaram maiores taxas de assimilação de CO2 quando comparadas ao controle e a mesma tendência foi observada para a cultivar IPR-Colibri. A aplicação do ASM promoveu o aumento da atividade da enzima antioxidativa peroxidase e a indução da síntese de compostos fenólicos e especialmente na cultivar suscetível IPRColibri. Para o rendimento de grãos e seus componentes, não foram observadas diferenças significativas entre o controle e os eliciadores ASM e harpina. Os eliciadores ASM e harpina induziram os mecanismos de resistência em feijoeiro contra X. axonopodis pv. phaseoli, indicando a potencialidade do uso dos eliciadores na cultura do feijoeiro.
The common bacterial blight, caused by Xanthomonas axonopodis pv. phaseoli is one of the major diseases of the bean crops. In search for alternatives to control the plant diseases, the use of the elicitors / inductors of resistance has been explored. Thus, the objective of this work was to verify the effectiveness of the elicitors harpina and acibenzolar-S-methyl in the induction of the defense mechanisms in bean plants (Phaseolus vulgaris L.) against common bacterial blight caused by X. axonopodis pv. phaseoli, evaluating the possible changes in the process of gas exchange and the activation of the key enzymes involved in the plant defense - peroxidase, superoxide dismutase, besides proteins and phenols. It was used seeds from IAPAR 31 and IPR Colibri cultivars. After emerged the first trifoliate leaves in the vegetative stage (V3) the plants were treated with the elicitors Acibenzolar-S-methyl and harpina, and distilled water (control). Seven days after the first application of the elicitors, the pathogen was inoculated on the leaves of bean plants. The severity assessment was performed every 10 days and the first evaluation 15 days after the pathogen inoculation. The measurement photosynthesis were performed 40 days after the inoculation when the symptoms and the damages of the disease showed themselves established. To carry out the biochemical analysis, samples of leaf tissue from each treatment were collected 24 hours before, 24, 48 and 72 hours after the application of the elicitors. Also, it was determined the yield and its components in both cultivars. The application of ASM and harpina provided the reduction in the severity of the common bacterial blight disease of the bean plants of IPR-Colibri cultivars and the same trend was observed for the IAPAR 31 cultivars treated with the elicitor ASM. Plants by IAPAR 31 treated with the elicitor ASM showed higher rates of assimilation of CO2 when compared to the control and the same trend was observed for cultivar IPR-Colibri. The application of ASM promoted the increase of the antioxidative enzyme peroxidase activity, and the induction of the phenolic compounds synthesis and, especially in the susceptible cultivar IPR-Colibri. For grain yield and its components, significant differences were not observed between the control and the elicitors ASM and harpina. The elicitors ASM and harpina induced the resistance mechanisms in bean plant against X. axonopodis pv. phaseoli, indicating the potentiality of the elicitor utilization in bean crops.

A crescente procura por alimentos mais saudáveis demanda um aumento na produção isenta de agrotóxicos. O feijão-de-vagem é uma das principais olerícolas cultivadas no Brasil. Dentre as principais doenças que afetam essa cultura está o oídio, podendo ocasionar perdas de produção em até 69%, sendo de ocorrência comum em cultivos protegidos especialmente em períodos tardios. O uso do leite tem demonstrado boas perspectivas no controle desta doença em diversas culturas. Foram desenvolvidos na Universidade Tecnológica Federal do Paraná – Campus de Pato Branco – PR, nos anos de 2007 e 2008, trabalhos com o objetivo de avaliar o efeito do leite de vaca in natura e seus possíveis mecanismos de ação sobre o controle de oídio em feijão-de-vagem sob ambiente protegido. Conduziu-se experimento com aplicação de leite de vaca in natura nas concentrações de 0%, 5%, 10%, 15% e 20% em freqüência semanal e quinzenal, com e sem espalhante adesivo. Foi avaliada a severidade da doença e a produtividade. O delineamento foi em blocos ao acaso, com 4 repetições. Em outro experimento avaliou-se o efeito dos componentes químicos do leite, com aplicações foliares de Nitrato de Potássio (0,79 g L-1), Cloreto de Amônio (0,82 g L-1), Nitrato de Cálcio (0,96 g L-1), Fosfato de Amônio Monobásico (0,51 g L-1), Carbonato de Sódio (0,23 g L-1), mistura destes componentes, leite (200 ml L-1) e água. O delineamento foi inteiramente casualizado com 3 repetições. No terceiro experimento avaliou-se a atividade metabólica em tecidos foliares de feijão-de-vagem tratado com aplicações semanais de leite de vaca in natura nas concentrações do primeiro experimento. O cultivo foi em vasos, em casa de vegetação com ambiente controlado. O delineamento foi inteiramente casualizado com 4 repetições. Para realização das análises bioquímicas (proteínas, açúcares totais e redutores, peroxidases e FAL) foram coletados discos foliares de 0,2 g de cada unidade experimental, 24, 48 e 72 horas após a aplicação do leite de vaca in natura. O leite aplicado em freqüência semanal promoveu controle do oídio de 37,94 a 79,96%. Em freqüência quinzenal o controle variou de 22,32 a 28,59%, sendo mais efetivo no início da infestação. Sua aplicação não requer uso de espalhante adesivo. As concentrações mais viáveis foram entre 10 e 15%. Aplicação dos diferentes componentes químicos de forma combinada controlou a doença de forma semelhante à aplicação do leite de vaca in natura. Aplicações de concentrações crescentes de leite de vaca in natura interferiu nos parâmetros bioquímicos foliares de proteínas, açúcares totais e redutores, atividade de peroxidase e FAL, demonstrando ser um elicitor capaz de induzir a uma resposta de resistência, alterando a atividade de enzimas relacionadas com a defesa do feijão-de-vagem.
The rising search for healthier food demands a rising in the production without fertilizers. The bean pod is one of the main plants from the vegetable gardens grown in Brazil. Among the main diseases which affect this culture is the powdery mildew which can cause losses in the production up to 69%, being a common occurrence in protected cultures especially in late periods. The usage of milk has shown good perspectives in this disease control in different cultures. Works with the aim of evaluate the effect of in natura milk and its possible mechanisms of action in the powdery mildew control in bean pods under a protected environment were developed during 2007 and 2008. In the Federal Technological University of Paraná – campus in Pato Branco- PR. The experience was conducted with the application of in natura milk in the concentrations of 0%, 5%, 10%, 15% and 20% every week or every fifteen days with or without the adhesive spreader. The severity of this disease was evaluated as well as the productivity. The design was in blocks at random, with four repetitions. In other experiment it was evaluated the milk chemical components effect with application leaf of Potassium Nitrate (0.79 g L-1), Ammonium Chloride (0.82 g L-1), Calcium Nitrate (0.96 g L-1), Ammonium Phosphate Monobasic (0.51 g L-1), Sodium Carbonate (0.23 g L-1), mixture of these components, milk (200 ml L-1) and water. The design was entirely developed with three repetitions. In the third experiment the metabolic activity was evaluated in the follicular tissue in bean pods treated with weekly applications of cow milk in natura in the concentrations of the first experiment. The cultivation was in vases in a vegetation house with controlled environment. The design was entirely developed with four repetitions. In order to make the biochemical analysis (proteins, total sugar and reductors, peroxidasis e PAL) Follicular disks of 0.2g were collected from each experimental unity, 24, 48 e 72 hours after the application of cow milk in natura. The milk applied weekly promoted the powdery mildew control of 37.94 to 79.96%. Being used every fifteen days the control varied from 22.32 to 28.59%, being more effective in the beginning of the infestation. Its application does not require the usage of adhesive spreader. The most variable concentrations were between 10 e 15%. The application of different chemical components in a combined form controlled the disease in a similar way to the application of cow Milk in natura. The applications of rising concentrations of cow milk in natura interfered in the follicular biochemical patterns of proteins, total sugar and reductors, activity of peroxidasis and PAL demonstrating to be an elicitor which is able to induct to an answer of resistance, alternating the enzymatic activity related to the bean pod defense.

Common bean (Phaseolus vulgaris L.) is an important legume crop in Kenya and is a cheap source of proteins. The small scale farmers in Kenya produce common bean under low agricultural input systems and this predisposes the crop to pests and diseases. Among the diseases, angular leaf spot (ALS) is a major constraint to common bean production and contributes to yield losses as high as 80%. The causative pathogen Pseudocercospora griseola (Sacc.) Crous & Braun is highly variable and several races have been reported. There are few common bean genotypes with resistance to this disease. Therefore breeding for resistance to ALS is important for the country. This study was carried out to; i) evaluate the common bean production systems, constraints and farmer varietal preferences in Kenya, ii) evaluate local landraces and selected introductions of common bean for yield performance and reaction to ALS, iii) study the genetics of resistance to ALS in common bean and iv) develop a breeding method for durable resistance to ALS in common bean. To determine the common bean production systems, farmers’ preferred traits and their knowledge on common bean constraints including ALS, a survey was conducted in Kiambu county using a semi-structured questionnaire, interviews, and focus group discussions. The study revealed that farmers cultivate common beans during the short and long rain seasons. However, they experience better yields in the short rains due to reduced disease incidence. The majority of the farmers (71%) intercrop common bean and this ensures maximum utilisation of space. A high percentage (70%) of the farmers utilise their retained seed for production. The farmers identified ALS as one of the most important constraints to production. The only preventative measure they undertake to control the disease is weeding. The farmers reported that they would prefer improved varieties that were resistant to ALS. Farmers have a preference for particular common bean traits that include high yield (80%), resistance to insect-pests and diseases (72%), type I growth habit (52%), early maturity (68%), seed size and colour (21%) and cooking time (20%). These should be incorporated in breeding programmes. Two hundred common bean landraces and market class varieties were evaluated for ALS resistance in a nethouse at University of Nairobi, Kabete Field Station and for ALS resistance and yield in the field in KARI-Tigoni. The results showed that disease severity scores for the genotypes were similar in the two locations, with the top three resistant genotypes being Minoire, GBK 028123 and Murangazi with disease severity scores of 2.9, 2.9 and 3.2 in Kabete and 2.6, 2.8, and 2.9 in Thika respectively. These resistant genotypes can be used as sources of resistance in a breeding programme or they can be used as resistant varieties. All the market class varieties were susceptible to ALS (disease severity score 6.7-8.0). There was a non-significant correlation between disease and yield most likely because most of the resistant genotypes were exotic and hence not adapted to the local conditions. There was also a non-significant correlation between disease and seed size. The two hundred common bean genotypes were evaluated for yield at University of Nairobi, Kabete Field Station and KARI-Thika. The results indicated that the 2011 and 2012 seasons had similar mean yields and that yields at Kabete were higher than at KARI-Thika. The highest yielding genotypes across the two locations were; GLP 2 (766 kg ha-1), Nyirakanyobure (660 kg ha-1), GBK 028110 (654 kg ha-1), GLP 585 (630 kg ha-1) and Mukwararaye (630 kg ha-1). There was a significant genotype x environment interaction and hence it is important for breeders to carry out stability analysis, so as to recommend varieties for a wide range of environments. To study the genetics of ALS resistance in common bean, three inter-gene pool crosses: Super-rosecoco x Mexico 54, Wairimu x G10909 and Wairimu x Mexico 54 were made. The resistant genotypes were Mexico 54 and G10909, while Super-rosecoco and Wairimu were susceptible. The generations F1, F2, BC1P1 and BC1P2 for each of the crosses were developed. The parents P1, P2 and the five generations of each cross were evaluated for resistance to ALS in Kabete Field Station. Results showed that both dominance and additive gene action were important in the expression of resistance to ALS. However, additive gene action was predominant over dominance gene action. There was a moderately high narrow sense heritability estimate (52.9-71.7%). The minimum number of genes controlling resistance to ALS was between 2 and 3. The predominance of additive gene effects and the moderately high narrow sense heritability estimates recorded imply that progress in resistance to ALS could be made through selection in the early segregating generations. A double cross followed by selection against resistant genotypes was used to develop a method to breed for durable resistance to ALS in common bean. The method was used to accumulate minor genes of ALS resistance into single genotypes. Four intermediate resistant landraces were used to develop a double cross population that was screened using a mixture of ALS races. Selection in F1 and F2 population was done on the basis of intermediate resistance (disease severity score 4.0-6.0), while selection from F3 population was based on resistance (disease severity score 1.0-3.0). Ten advanced F4 lines along with their parents were evaluated for ALS resistance. The F4 advanced lines had a significantly improved resistance to ALS compared to their parents. Hence the method was successful in accumulating minor genes for resistance thus showing significant breeding progress in breeding for durable resistance.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2013.

Experiments were performed to determine the nature of maize influence on bean disease in additive-type intercrops. Overall effects of intercrops on angular leaf spot (caused by Phaeoisariopsis griseola) in Kenya indicated >23% reductions (P<0.05) in area under the disease progress curve (AUDPC) in two of three season-site combinations. Fertilization tended to increase disease (135-205%, P<0.10), but changes in bean density or planting pattern had no effect. Intercrops reduced temperature and wind velocity, but increased relative humidity. A 27% AUDPC reduction (P=0.07) in bean rust (caused by Uromyces appendiculatus) due to intercropping was observed in Oregon in 1989 and 1990 in two of three locations. Mechanisms of maize influence on rust were also assessed in Oregon. Intercropping, and competition of maize with beans alone, consistently steepened dispersal gradients (P<0.10). Interference of maize with dispersal alone tended to flatten gradients. Spore retention in plots was increased in mid-season, then decreased late in the season, due to competition in both years (P<0.05). Intercropping reduced infection by 96% late in 1989 (P<0.05), probably due to microclimatic influence of maize. The data from these experiments were used as inputs for computer simulation to evaluate effects of specific mechanisms on disease dynamics. Combination of all mechanisms (= intercrop) reduced AUDPC to 32% of monocrop, using 1989 data. Infection efficiency reductions, and to a lesser extent dispersal effects, were responsible for these changes. Intercrop effects declined as pathogen multiplication rate (DMFR) increased. No intercrop effect occurred at any DMFR using 1990 data, although interference and competition effects of maize alone both increased AUDPC at low DMFR. Partitioning dispersal effects into those due to gradient slope changes and spore retention indicate that the latter accounts almost entirely for disease alteration.
Graduation date: 1992

Intra- and interplant movement and dispersal of the predator mites Neoseiulus californicus (McGregor) and Neoseiulus fallacis (Garman) were studied on both lima bean (Phaseolus lunatus L.) and apple (Malus pumila Miller) branch plant systems that were seeded with excess numbers of the spider mite Tetranychus urticae Koch. Individuals of either predator were randomly selected from colonies of well-fed, mixed-age adult females and moved to test plants. When tested separately in each plant system, median leaf positions of N. californicus from the point of release were greater than those of N. fallacis at 1-8 d. A fan placed in front of a common source unit (1x3m) containing T. urticae and near equal densities of both predaceous mites, provided continuous air (wind) to 3 isolated receiver units located 2.5, 5, and 7.5 m downwind. Receiver units consisted of continuous bean foliage with excess T. urticae, but no predators. Wind speeds at the source and each receiver unit averaged 2.2, 0.9, 0.4, and 0.03 m/s respectively. As predators eliminated prey, N. fallacis dispersed earlier at higher prey densities and further downwind than N. californicus, but cumulative densities of each predator in all receiver units were alike after 20 d. Results of both plant movement studies supported the hypothesis that N. californicus has dispersal traits more like those of a generalist predator of spider mites than does N. fallacis. Spatial patterns of dispersal and biological control of pest mites are discussed in relation to predation types within the Phytoseiidae.
Graduation date: 1997

Polyclonal antisera were raised against isolates of bean common mosaic virus (BCMV) and bean common mosaic necrosis virus (BCMNV) using conventional serological methods. Infected tissues containing, respectively, 22 recognized BCMV and BCMNV isolates were tested against the two antisera by antigen-coated plate (ACP) ELISA and double antibody sandwich (DAS) ELISA. Results indicated that each immunoglobulin was virus-specific by DAS-ELISA, providing clear distinction between BCMV and BCMNV. A reverse transcription, polymerase chain reaction (RT-PCR)-based assay in combination with restriction endonuclease analyses, was developed for molecular detection of BCMV, BCMNV and their pathogroups. Specific detection of the two viruses was accomplished by constructing two virus-specific primer pairs that amplified a PCR product specific for each virus. Distinction of two BCMNV pathogroups (PG-III and PG-VI) was achieved by restriction enzyme XbaI digestion of BCMNV PCR products. However, none of the tested restriction enzymes clearly differentiated the five recognized BCMV pathogroups. A primer pair Dts/Uny15 specific for BCMV pathogroup V was also developed. By its RT-PCR application, four BCMV-PG-V isolates were differentiated from the other known variants of BCMV pathogroup I, II, IV and VII. Thus, by a combination of RT-PCR and restriction enzyme analyses, it was possible to differentiate both viruses, and two pathogroups of BCMNV, and one pathogroup of BCMV.
Graduation date: 1996

Maize (Zea mays L.) supports millions of livelihoods in sub-Saharan Africa (SSA) in terms of food and feed. Production of the crop is however limited by several factors, among these, maize streak virus (MSV) disease. Although extensively studied, MSV remains a serious problem in SSA due to several challenges in breeding MSV resistant maize varieties. These include integration of MSV resistant germplasm from different backgrounds, reliance on a few resistant sources, and genotype x environment interactions. This study was designed to assess the breeding potential of several MSV resistant lines in hybrid combinations. Understanding architecture of genetic divergence and background of these genotypes would greatly aid in breeding high yielding and stable MSV resistant hybrids. Experiments were conducted during 2010 to 2012 seasons in Kenya. Diallel crosses and SSR markers were used to characterize MSV resistant maize inbred lines from three programs of CIMMYT, KARI and IITA. In general, this study revealed that MSV is still an important problem in Kenya with high incidence and severity levels in the farmers’ fields. The levels of MSV resistance in locally grown hybrids needs to be improved. Farmers challenged breeders to develop new hybrids that combine early maturing, high yield potential and MSV resistance. The study was successful in identifying the best eight inbred lines for use in breeding new maize hybrids with MSV resistance. The nature of gene effects was established for the first time, in particular the role of epistasis and G x E in conditioning MSV resistance in hybrids. Results indicate serious implications for previous models that ignored epistasis in studying MSV resistance in maize. The inbreds Z419, S558, CML509 and Osu23i, displayed high levels of epistasis for MSV resistance. Unless strong sources of MSV resistance, such as MUL114 and CML509, are used, breeding resistant hybrids will require parents that carry dominant resistance genes. The additive-dominance model was adequate to explain northern leaf blight (NLB) resistance in hybrids, indicating fewer complications in breeding NLB resistant hybrids. The study also reveals that SSR genetic distance data can be used to predict hybrid performance, especially when the correct set of markers is used. Many previous studies have not found any significant relationship between genetic distance and heterosis, due to large G x E and use of a wrong set of markers. The diallel analysis and SSR data established the important heterotic groups, which will be exploited for efficient development of MSV resistant maize hybrids. These strategies will be recommended to programs that emphasize MSV resistance in maize hybrids.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2013.

Peanuts contribute significantly to food security in western Kenya due to their high nutritional value and cash crop potential. However, the crop is highly susceptible to aflatoxin contamination. Yet little information is available on the extent of contamination in the region. This study explores the level and extent of contamination of peanuts by aflatoxins, Aspergillus section Flavi, Rhizopus and Penicillium spp. in western Kenya. A survey of 769 households was carried out in the Busia and Homa bay districts of Kenya. Information on peanut pre- and post-harvest practices was collected through person-to-person interviews. Aflatoxin levels of samples collected from each household were determined by indirect competitive ELISA method. Isolation of Aspergillus section Flavi, Penicillium and Rhizopus spp. was done on Modified Dichloran Rose Bengal (MDRB) agar, while identification of specific fungal species was done on Czapek yeast extract agar (CYA). Screening isolates of A. flavus and A. parasiticus for aflatoxin production was done in high sucrose yeast extract (YES) liquid medium, and the aflatoxin types identified on TLC plates, using analytical grades of aflatoxin B1, B2, G1 and G2 as reference standards. Common household preparation techniques (roasting, making peanut paste and boiling peanuts) were evaluated for effectiveness in reducing aflatoxin levels in peanuts. The boiling procedure was modified to test the effect of magadi (locally available salt used mainly to soften legumes, vegetables or maize while cooking), ammonium persulphate and sodium hypochlorite during soaking. Magadi, sodium bicarbonate and locally prepared ash was subsequently used to boil the nuts after soaking. Aflatoxin levels ranged from zero to 7525 ìg/kg. Most samples were safe to consume, based on the European Union and Kenya Bureau of Standards tolerance levels, with 63.7 per cent of all samples having undetectable levels, and only 7.54 per cent being contaminated based on KEBS standards. Peanuts from the Busia district, which has more of Lower Midland 1 (mean annual rainfall of 1600-1800 mm) and Lower Midland 2 (mean annual rainfall of 1300-1700 mm) agro-ecological zones had significantly (÷2=14.172; P=0.0002) higher levels of aflatoxin compared to the Homa bay district, that has more of the drier Lower Midland 3 agroecological zone (mean annual rainfall of 900-1500mm). Improved cultivars had significantly (÷2=9.748; P=0.0018) lower levels of aflatoxin compared to local cultivars. Over 60 per cent of all samples had A. flavus S-strain, A. flavus L-strain and A. niger. A. flavus S-strain was positively correlated with aflatoxin levels. As expected, grading of peanuts post-harvest significantly reduced the incidence of A. flavus S- and L-strains, while peanuts collected from farmers who belonged to producer marketing groups had a significantly lower incidence of A. flavus S- and L-strains, A. niger and Rhizopus spp. The incidence of A. flavus L-strain, A. niger and Rhizopus spp. was significantly higher in local landraces compared to the improved cultivars. Over 60 per cent of isolates produced Aflatoxin B1. Intermediate processes such as sorting and dehusking led to a significant decline in levels of aflatoxin. Soaking peanuts in water, magadi, NaOCl and ammonium persulphate significantly reduced aflatoxin levels by 27.7, 18.4, 18.3 and 1.6 per cent respectively; while boiling the peanuts in magadi, local ash, baking powder and water reduced aflatoxin levels by 43.8, 41.8, 28.9 and 11.7 per cent respectively. Using magadi during boiling increased the acceptability of the boiled peanuts while reducing the aflatoxin levels. The impact of aflatoxin levels in peanuts studied in this research is within safe limits except a few samples, and therefore aflatoxin contamination of peanuts at household level is not a serious threat. Contamination by aflatoxin and post-harvest fungi can be reduced by focusing on improved control strategies for wetter and more humid zones such as planting improved peanut cultivars and controlling pre-harvest pest damage. Conventional household peanut preparation techniques should be explored as possible aflatoxin management strategies in Kenya. The aflatoxin binding properties of locally available salts such as magadi and locally prepared ash should be further investigated.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2010.

Bean fly (Ophiomyia spp.) is a major pest of common bean (Phaseolus vulgaris L.) throughout eastern and southern Africa. In the semi-arid areas, apart from drought, the insect pest is reported to cause high crop losses up to 100%, particularly when drought occurs and under low soil fertility. Host-plant resistance is part of the integrated pest management strategies that have been widely employed against major insect pests of tropical legumes. However, information regarding its use in control of bean fly in common bean is limited. Therefore, the objectives of this study were to: (1) validate farmers’ perceptions of major constraints responsible for yield losses, particularly the major insect pests of beans; (2) asses the level of adoption of improved bean varieties and determine factors that influence farmers’ preferences of the varieties and criteria for selection; (3) identify sources of resistance to bean fly available in landraces; (4) determine the nature of gene action controlling bean fly resistance and seed yield in common bean; (5) describe a procedure for generating optimal bean fly populations for artificial cage screening for study of the mechanisms of resistance available in common bean against bean fly. Farmers considered drought and insect pest problems as main causes for low yields. The adoption rate for improved varieties was high but self-sufficiency in beans stood at 23% in the dry transitional (DT) agro-ecology and at 18% in the dry mid-altitude (DM) agroecology, respectively. Drought, earliness, yield stability, and insect pest resistance were the factors determining the choice of varieties by farmers. Bean fly (Ophiomyia spp.), African bollworm (Helicoverpa armigera) and bean aphid (Aphis fabae) were identified as key crop pests of beans limiting yield. The study to identify new sources of resistance included 64 genotypes consisting of landraces, bean fly resistant lines and local checks. The experiment was done under drought stressed (DS) and non-stressed (NS) environments and two bean fly treatments (insecticide sprayed and natural infestation) for three cropping seasons between 2008 and 2009. Genotypes differed in their reaction to natural bean fly attack under drought stressed (DS) and non-stressed environments (NS) over different cropping seasons. However, the effect of bean fly appeared to vary between the long rains (LR) and short rains (SR). It was observed that an increase in the number of pupae per stem resulted in a higher plant mortality. The range of seed yield was from 345 to1704 kg ha-1 under natural infestation and from 591 to 2659 kg ha-1 under insecticide protection. Seed yield loss ranged from 3 to 69 %. The resistance of most of the bean fly resistant lines seemed to be ineffective in presence of DS. To determine the nature of gene action controlling the inheritance of resistance to bean fly, four parents with known reaction to bean fly were crossed with four locally adapted genotypes in an 8 x 8 half-diallel mating design. Similarly, two resistant and two susceptible parents were selected and crossed to produce populations for generations means and variance components analysis. Results revealed that both general combining ability (GCA) and specific combining ability (SCA) mean squares were significant (p A 0.05) for all four traits studied, except SCA for stem damage during one cropping season. Among the parents, GBK 047858 was the best general combiner for all the traits studied across seasons except for stem damage during LR 2009. Genotypes GBK 047821 and Kat x 69 (a locally adapted variety) were generally good general combiners for resistance traits as well as seed yield. General predictability ratio values ranging from 0.63 to 0.90 were obtained for plant mortality, stem damage, pupae in stem and seed yield across cropping seasons. These results established the predominance of additive gene effects (fixable variation) over the non-additive effects in controlling the traits. Low to moderate narrow sense heritability values ranging from 0.22 to 0.45 were obtained for pupae in stem. Such heritability estimates indicate that although additive gene components were critical in the inheritance of resistance for the trait, non-additive gene action was also important in addition to the environmental effects. A major disadvantage in screening for resistance to bean fly in common bean by controlled means in net cages has been the lack of a method to use for raising adequate fly populations for screening. Due to this problem, a simple procedure for raising sufficient numbers of adult bean flies required for screening was described. Through this method, up to 62 % emergence of the adult flies was achieved. Moreover, the flies retained their ability to infest bean plants. To determine the presence of antibiosis and antixenosis mechanisms of resistance in common bean, five genotypes [CC 888 (G15430), GBK 047821, GBK 047858, Ikinimba and Macho (G22501)] and two local check varieties (Kat B1 and Kat B9) were screened under free-choice in outdoor net cages and no-choice conditions in net cages placed in a shadehouse. All the five resistant genotypes tested had relatively long internodes. It was established that long internode was a morphological trait associated with reduced pupation rate in bean stems, hence an antixenosis component of resistance. Both ovipositional non-preference and antibiosis mechanisms were found to exist in three genotypes namely CC 888 (G45430), GBK 047858 and Macho (G22501). These genotypes were resistant when they were subjected to bean fly under both free-choice and no-choice conditions. They had fewer feeding/oviposition punctures, low number of pupae in the stem, reduced damage to the stems and low percent plant mortality. The remaining genotypes, Ikinimba and GBK 047821 only expressed antixenosis. To maximize the effectiveness of host-plant resistance against bean fly, multiple insect resistances should be incorporated into a single bean genotype in order to ensure durability. However, this should be within the background of integrated pest management strategy.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2010.

The common bean (Phaseolus vulgaris L.) is an important crop grown widely in Uganda. It is also an important source of income for smallholder farmers particularly women. Despite its importance, production in the cool highland regions is constrained by anthracnose disease which causes losses in both the quantity and the quality of beans produced. The principal aim of this research was to elucidate on the status of dry bean anthracnose and the genetics governing its resistance. A participatory rural appraisal study was conducted to explore farmers' knowledge, experience, problems and cultivar preferences in association with managing dry bean anthracnose disease. This study revealed that anthracnose is an important constraint to production which is not controlled in any way. Although farmers have varying cultivar preferences, they use mostly home saved seed and only 1% could access improved seed. The study suggested the need for practical approaches in the provision of quality anthracnose resistant seed in consideration of farmers' preferences and the dynamics of their rural livelihoods. A study was conducted to determine the variability of the anthracnose (Colletotrichum lindemuthianum) pathogen in some of the major bean growing regions of Uganda. Use was made of a set of 12 internationally accepted anthracnose differential cultivars to identify the physiological races present. The results obtained indicated the presence of eight races with one race (767) being dominant and most aggressive. Differential cultivars AB 136 and G2333 were resistant to all the eight races, and can be utilised as potential sources of resistant genes. A germplasm collection of mostly Ugandan accessions was screened for anthracnose resistance. Using the area under disease progression curve as the tool for assessing disease severity, eleven accessions were identified that posses good levels of anthracnose resistance. The yield loss attributed to the anthracnose disease was determined on three susceptible Ugandan market-class dry bean cultivars and two resistant cultivars. The results showed that the yield of susceptible cultivars was reduced by about 40% and an almost equivalent yield was lost due to poor quality seed. In comparison, the yield lost by the resistant cultivars was not significant. The study suggested the use of resistant cultivars as the best solution in combating anthracnose resistance. Three susceptible Ugandan market class dry bean cultivars and six resistant cultivars were used for the study of the inheritance of resistance to the anthracnose pathotype 767 in a complete 9x9 diallel design. The results clearly indicated that the resistance was predominately conditioned by additive gene action. It was also established that epistatic gene action was important. More than one pair of genes displaying partial dominance were responsible for determining resistance and the maternal effect did not have an influence on resistance. Additionally, the result showed that some of susceptible cultivars combined very well with the resistant cultivars and that anthracnose resistance heritability estimates in both the narrow and broad sense were high. These results suggested that the use of simple pedigree breeding procedures such as backcross selection could be useful in improving anthracnose resistance levels in the Ugandan market class varieties.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2006.

Common root rot is a major disease of commercially grown snap bean (Phaseolus vulgaris L.) on the irrigated sandy soils of central Wisconsin. The objective of this study was to determine the relationships between soil properties and suppressiveness to common root rot of snap bean (causal agent Aphanomyces euteiches) in soils. The soils had been annually amended for three years in a field trial on a Plainfield sandy loam in Hancock, WI. Soils were amended each year from 1998 to 2001 with three rates of fresh paper-mill residuals (0, 22 or 33 dry Mg ha�����) or composted paper-mill residuals (0, 38 or 76 dry Mg ha�����). Soil was removed from each treatment in April (one year after last amendment) and brought to the laboratory. This was repeated with a field soil sample taken in September, 2001. The soils from the two samplings were incubated at room temperature and periodically assayed (days 9, 44, 84, 106, 137, 225 and 270 for April sampling) (days 13, 88 and 174 for September sampling) for suppressiveness of snap bean root rot (0 to 4 where 0=healthy and 4=dead plant). The same days, incubated soils were characterized for ��-glucosidase, arylsulfatase and fluorescein diacetate activities; microbial biomass C (by chloroform fumigation); water stable aggregation (WSA) and total C. In the first incubation, there were large differences between field amendment treatments in terms of snap bean root rot incidence. The disease was suppressed by both fresh and composted amendments, but compost was most suppressive at high compost rates with disease incidence <40% which are considered healthy plants that can reach full yield potential. In the second incubation, disease severity difference among treatments were similar to the first incubation. This would indicate the suppression was induced prior to initiation of this experiment. Disease severity of bean plants grown in unamended field soil was high but in amended soils tended to decrease in intensity over time. Root rot severity was negatively related to ��-glucosidase, and microbial biomass at the beginning and the end of the first incubation period, respectively. FDA hydrolysis was not correlated with disease severity and WSA moderately correlated with disease. The best indicator of disease severity was arylsulfatase which was significantly and negatively correlated with disease severity in 4 of 5 sampling periods.
Graduation date: 2003

In the genus Fusarium are many important plant pathogens. The diversity of hosts the genus attacks, the number of pathogenic taxa and the range of habitats in which they cause disease are the greatest in plant pathology. One important species complex within the genus Fusarium is Fusarium oxysporum Schlecht. This species complex consists more than 80 pathogenic forma specialis and is particularly difficult to control. The fungi can survive in soil for decades as specialized spores, known as chlamydospores. Interestingly, however, this species complex also contains beneficial non-pathogenic forms that can be exploited to manage Fusarium wilt diseases. In this study, the ability of non-pathogenic F. oxysporum strains, Trichoderma harzianum Rifai Eco-T®, soluble silicon, and their combination was evaluated on two important crops, banana (Musa sp. L.) and beans (Phaseolus vulgaris L.), for their potential to suppress pathogenic strains of F. oxysporum. The ability of these crops to take up and accumulate silicon in their organs, and its effect on low temperature stress was also investigated. Several endophytic fungi, mainly Fusarium spp. and bacteria, were isolated from healthy mature banana plants. After preliminary and secondary in vivo screening tests against F. oxysporum f.sp. phaseoli on beans (Phaseolus vulgaris L.) cv. Outeniqua, two non-pathogenic F. oxysporum strains were selected for further testing. These two non-pathogenic F. oxysporum strains were found to colonize banana (Musa sp.) cv. Cavendish Williams and bean plants, and to suppress Fusarium wilt of these crops. In order to improve the efficacy of these biocontrol fungi, soluble silicon was introduced. The relationship between plant mineral nutrition and plant diseases have been reported by several authors. Plants take up silicon equivalent to some macronutrients, although it is not widely recognized as an essential element. In this study, we established that roots, the target plant organ for soilborne plant pathogens, accumulated the greatest quantity of silicon of any plant organs when fertilized with high concentrations of silicon. On the other hand, the corm and stem accumulated the least silicon. Such observations contradict the concept of passive uptake of silicon via the transpiration stream in these plants as the only uptake mechanism. The prophylactic properties of silicon have been documented for many crops against a variety of diseases. In vitro bioassay tests of silicon against these wilt pathogens showed that silicon can be toxic to Fusarium wilt fungi at high concentrations (>7840 mg .-1), resulting in complete inhibition of hyphal growth, spore germination and sporulation. However, low concentrations of silicon (<490 mg .-1) encouraged hyphal growth. Silicon fertilization of banana and beans significantly reduced disease severity of these crops by reducing the impact of the Fusarium wilt pathogens on these crops. However, it could not prevent infection of plants from the wilt pathogens on its own. Synergistic responses were obtained from combined applications of silicon and non-pathogenic F. oxysporum strains against Fusarium wilt of banana. Combinations of silicon with the non-pathogenic F. oxysporum strains significantly suppressed disease severity of Fusarium wilt of banana, caused by F. oxysporum f.sp. cubense (E.F. Smith) Snyder & Hansen, better than applications of either control measure on their own. Banana production in the subtropical regions frequently suffer from chilling injury, and from extreme variations between night and day temperatures. Such stress predisposes banana plants to Fusarium wilt disease. Silicon, on the other hand, is emerging as important mineral in the physiology of many plants, ameliorating a variety of biotic and abiotic stress factors. We established that silicon fertilization of banana plants significantly reduced chilling injury of banana plants. Membrane permeability, lipid peroxidation (MDA level) and proline levels were higher in silicon-untreated plants than the treated ones, all of which demonstrated the stress alleviating effect of silicon. Low temperatures damage the cell membrane of susceptible plants and cause desiccation or dehydration of these cells. Levels of sucrose and raffinose, recognized as cryoprotectants, were significantly higher in silicon-amended banana plants than unamended plants.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2008.

Soybean (Glycine max (L.) Merr.) occupies an important position in the world economy of the feedstock of high quality protein and vegetable oils. However, its production is threatened by, Asian soybean rust (ASR), caused by the rust fungus Phakopsora pachyrhizi Syd. & P. Syd. This fungus is highly dependent on environmental conditions, has a wide range of hosts, and evolves rapidly into novel races, making it difficult to control. In addition, most commercial varieties are susceptible to rust, the rust has already developed resistance to triazole fungicides, and most small-scale farmers cannot afford expensive systemic fungicides to control the disease. The use of resistant varieties is the most viable, long-term option to manage ASR, especially in the small-holder soybean farming sector. This study was therefore designed to undertake the following goals: (i) to identify farmers’ preferred varieties and desired traits, their knowledge of ASR, and other key constraints affecting soybean production in Kenya; (ii) to evaluate soybean accessions for rust resistance, and to determine the correlation of rust resistance with other agronomic traits; (iii) to determine the mode of inheritance for ASR resistance and selected agronomic traits; and (iv) to determine yield stability of soybean advanced lines at multiple sites in Central and Eastern Kenya. To understand farmers’ preferred varietal characteristics, knowledge of ASR and other key constraints to soybean production, a survey was conducted using a structured questionnaire in the major soybean growing areas of Kenya. The farmers preferred local varieties because of their desirable characteristics, which included high yields, early maturity, drought tolerance and seed availability. Although the majority of the participating farmers expressed a willingness to grow improved varieties, financial limitations, seed unavailability and lack of information were the major barriers to their use of improved varieties. High yield, early maturity, adaptability and grain quality were the traits that most farmers sought in an ideal soybean variety. Knowledge of the cause of ASR was limited, and its occurrence was largely attributed to environmental factors, poor soil fertility conditions, poor agronomic practices, physiological maturity and specific species of weeds. Their investments in control methods were minimal due to a lack of technical knowledge, poor access to fungicides, and limited resources. Other constraints faced by soybean farmers included: lack of access to grain markets; lack of knowledge in processing and utilization of soybean grain; the unavailability of seeds; losses to pests and diseases; the lack of inputs such as fertilizers; frequent dry spells; and low yielding varieties. A total of 110 soybean accessions were evaluated for their rust reactions and correlations with selected agronomic traits. These included plant introductions possessing single rust resistant genes (Rpp1-4), tolerant lines, gene bank accessions, commercial varieties and advanced lines. Soybean genotypes varied significantly in their reactions to rust severity, sporulation, lesion type and area under disease progress curve (AUDPC) values. Genotypes possessing Rpp4 (G10428) and Rpp2 (G8586) resistant genes, and non-characterized genotypes MAK BLD 11.3, GC 00138-29 and Namsoy 4M, were the most resistant accessions, as indicated by low rust severity scores, low AUDPC values, red brown lesions and low sporulation scores. Other genotypes with known resistant genes including G7955 (Rpp3), G58 and Tainung 4 (Rpp1), a few tolerant lines, and one advanced line (BRS Sambaiba) were moderately resistant. All the other advanced lines, commercial varieties, gene bank accessions and collections from the farmers’ fields were highly susceptible to rust. Rust severity was positively correlated with rust sporulation, indicating that reduction of sporulation made a significant contribution towards rust resistance. An F2 population was generated from a half diallel mating design, involving 4 resistant, 2 moderately resistant and 2 susceptible genotypes selected as parents. The F2 populations along with their parents were evaluated in two environments to determine the type of gene action for rust resistance and other quantitative traits in soybeans. The results revealed that both general combining ability (GCA) and specific combining ability (SCA) were significant for most of the traits studied, indicating that both additive gene action and non-additive gene action played a major role in the inheritance of rust resistance and selected agronomic traits. The GCA/SCA ratio was close to unity for rust severity, rust sporulation, days to flowering, days to maturity and plant height. This indicated that additive gene action played a more significant role in the inheritance of these traits than non-additive gene action. Non-additive gene action was only predominant for soybean grain yield. Parental lines G10428, G8586 and Namsoy 4M were the best general combiners for improving rust resistance across the environments. The most promising parents for early flowering were G7955, G8586 and G58. Parent Maksoy 1N was the best general combiner for early maturity while parents Maksoy 1N, G58, G7955 and Nyala contributed effectively towards reduced plant height. Yield stability analysis was conducted for 30 genotypes in 6 environments, using additive main effects and multiplicative interaction (AMMI), genotype main effect and genotype x environment interaction (GGE) biplot analyses. Genotypes 916/5/19 and G7955 were identified as the high yielding and most stable across the environments. On the other hand, genotypes BRS MG46 and Sable were high yielding but unstable and specifically suitable for the environments EM2 and MW2, respectively (both environments have long rainy seasons). Environment EM2 was identified as the most discriminating and representative among the six environments. Environments IG1 and MW1 (short rainy seasons) were less informative on genotypes tested, as confirmed by short environment vectors. Environment EM1 was better for discriminating genotypes but was a poor representative of the test environments, hence it should only be utilized for developing specifically adapted genotypes. Further analysis using GGE biplot approach grouped the environments into three putative mega-environments in Central and Eastern Kenya. Overall, this study established the need to educate farmers on the cause of ASR, to develop ASR resistant varieties, and to incorporate farmers’ desired traits in the breeding programme, especially by the use of participatory breeding approaches. The resistant and moderately resistant genotypes identified in this study could be used as sources of resistant genes to develop ASR resistant varieties in Kenya. This study also established that genetic improvement for ASR resistance and selected agronomic traits in soybeans is possible based on the use of recurrent selection breeding procedures that result in the accumulation of additive gene effects. Selection of late segregating generations would be effective for soybean grain yield improvement. This study identified potential parents for ASR resistance and selected agronomic traits, but they require further breeding to improve on farmers’ desired traits.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2012.

Maize is the principal staple food in sub-Saharan Africa (SSA), but production lags behind population growth. The African stem borer, Busseola fusca, Fuller (Lepidoptera, Noctuidae), and the spotted stem borer, Chilo partellus, Swinhoe (Lepidoptera, Crambidae) are serious insect pests of maize in tropical environments. The damage can be managed by breeding stem borer resistant maize varieties but there is limited information that can be used to devise appropriate breeding programs. Therefore breeding investigations were conducted to appraise germplasm screening methods, and to determine combining ability, heterosis and response of maize populations to S1 progeny recurrent selection. The study was conducted in Kenya during 2010 to 2013. The results showed that most of the test genotypes were susceptible to B. fusca and less so to C. partellus, indicating that breeding for B. fusca would be more challenging. Therefore more resources would be required to improve maize germplasm for resistance to B. fusca to broaden the base from which breeders will select suitable lines for breeding. There was a highly significant (r=0.947, p≤ 0.01) correlation between rank selection index in the greenhouse and laboratory. The detached leaf disk bioassay method was effective for screening maize genotypes for resistance to both stem borers. Therefore it will be recommended for use in screening maize genotypes in future studies. The line x tester studies indicated a preponderance of the additive gene effects for borer resistance traits. Specific combining ability effects were significant for resistance traits and grain yield indicating that non-additive effects were also influential. Findings from the breeding investigations will impact positively on both food security and plant breeding capacity. The completed study was successful in identifying new maize inbred lines with resistance to both stem borers. These lines have high utility to maize breeding programmes that emphasise stem borer resistance in tropical environments. For the hybrid-oriented programmes, combining ability and heterotic orientation data for the 66 maize inbred lines will be crucial. In this regard the study was very successful in classifying the lines into three heterotic groups according to single cross testers (CML395/CML444, and CML312/CML442) that are widely used at CIMMYT, and by public breeding programs throughout SSA. Importantly, this was done based on grain yield potential of hybrids under B. fusca and C. partellus infestations in three mega environments. The study demonstrates that S1 progeny recurrent selection is effective for improving stem borer resistance, without compromising yield. There was significant reduction (69%) in maize plant damage by both pests, and yield gains of 25% to 70% were realised in two populations. This represents significant contribution to plant breeding capacity, especially to maize breeding programmes that emphasise stem borer resistance in hybrids.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2014.

Cassava (Manihot esculenta Crantz ssp. esculenta) is the second most important food crop and a main source of income for the rural communities with potential for industrial use in the coastal region of Kenya. However, its productivity of 5 to 9 t ha-1 is low due to the low yield potential of the local cassava landraces caused by cassava brown streak disease (CBSD) among other biotic and abiotic constraints. Breeding for CBSD resistant varieties with farmer desired characteristics is hampered by limited information on the current status of the disease and farmers’ preferred characteristics of new CBSD resistant genotypes. In addition, there is a lack of an effective inoculation technique for cassava brown streak virus (CBSV) for screening genotypes for CBSD resistance. Information about the general combining ability (GCA) and specific combining ability (SCA) for CBSD above and below ground symptoms, fresh biomass yield (FBY) and fresh storage root yield (FSRY) (kg plant-1), harvest index (HI), dry matter % (DM %) and picrate score (PS) is limited and conflicting especially for the cassava germplasm in Kenya. These studies were carried out to update information on the status of CBSD, farmer’s preferences for cassava genotypes, and identify the most effective CBSV inoculation technique. In addition, the studies aimed to: determine the GCA and SCA for, and gene action controlling, the incidence and severity of above ground CBSD, root necrosis, FBY, FSRY, HI, DM %, and PS; and identify CBSD resistant progeny with farmers’ desired characteristics. A survey carried out in three major cassava-growing divisions in Kilifi, Kwale and Malindi Districts indicated that there was potential to increase production and productivity by increasing the area under cassava production and developing CBSD resistant genotypes that are early maturing, high yielding and sweet. In addition, CBSD was widely distributed, being present in 98.0% of the farms surveyed at a mean incidence of 61.2%. However, 99.0% of farmers interviewed lacked awareness and correct information about the disease. The genetic variability of cassava within the farms was low as the majority of farmers grew one or two landraces. Highly significant differences (P < 0.01) were observed among inoculation techniques for CBSV for which the highest infection rate of up to 92.0% was observed in plants inoculated by wedge grafting infected scion. Highly significant differences (P < 0.01) were observed among genotypes, between sites and their interaction for incidence of CBSD and root necrosis, while the differences among genotypes and the interaction between genotypes and the period of ratings were highly significant (P < 0.01) for the severity of CBSD and root necrosis. Above ground CBSD symptoms were not always associated with below ground CBSD symptoms and below ground CBSD symptoms were more severe at 12 months after planting (MAP) than at 6 MAP. Therefore, selecting cassava genotypes with resistance to below ground CBSD is more important than selection based on resistance to above ground CBSD and should be done after 12 months. Genotypes 5318/3 (exotic) followed by Msa140 and Plot4 (both local) had high resistance and can be used as new sources of resistance to root necrosis. Both GCA and SCA effects were highly significant with GCA sums of squares (SS) predominant over the SCA SS for most traits evaluated except for DM % at the clonal stage. These results indicate that although additive and non-additive genetic effects are involved in the inheritance of these traits, the additive genetic effects are more important except for DM %. Therefore breeding for CBSD-resistant genotypes that have characteristics desired by farmers in the coastal region of Kenya can be achieved through recurrent selection and gene pyramiding followed by participatory selection or use of a selection index that incorporates characteristics considered important by farmers.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2008.

Fusarium root rot (FRR) disease, caused by the fungus Fusarium solani f. sp. phaseoli (FSP), is an important soil-borne disease reducing common bean (Phaseolus vulgaris L.) yields, and hence food security, in Uganda and elsewhere in developing countries where the crop is grown without fungicides. The key aim of this study was to elucidate the significance of bean root rot (BRR), appraise methods for screening germplasm for resistance to FRR, determine the genotypic variability of resistance, and the inheritance of resistance to FRR in common bean. This information was deemed useful in devising an appropriate strategy for breeding FRR resistance in beans. A participatory rural appraisal (PRA) was conducted in south-western and eastern Uganda to ascertain farmers’ awareness of BRR and their influence on preferred bean varieties. Bean root rot is considered to be the most devastating and most recognised disease, especially in south-western Uganda. Control measures for BRR were very minimal, and in some cases, non-existent. Use of resistant varieties to control the disease was not evident, because the most popular varieties were susceptible to the disease. The resistant bean varieties currently available have undesirable characteristics such as small seed size, black seed and late maturity. Large-seeded bean varieties, even though cited as being more susceptible to BRR than the small-seeded varieties, are still very popular. The study highlighted the need for breeding FRR resistance in the large-seeded bean varieties that are highly preferred by farmers. Four isolates of FSP (FSP-1, FSP-2, FSP-3 and FSP-4) were tested for pathogenicity under screenhouse and laboratory conditions. In addition, three methods of storing and maintaining the viability of FSP isolates were appraised. The isolate FSP-3, was found to be the most pathogenic, resulting in 100% disease incidence on all bean varieties tested, with high severity scores. The potato dextrose agar (PDA) slants stored at 5oC were found to be the best method of storage for pathogenic isolates. The FSP-3 isolate was subsequently utilised for screening bean lines for resistance to FRR. The influence of soil composition, irrigation frequency, and inoculation technique on the severity of FRR was studied on six bean lines. Interactions of irrigation frequency, soil composition, and bean lines were not significant. The 50% swamp soil:50% forest soil composition and forest soil alone categorized the varieties most distinctly according to their reaction to FRR. Also, the best distinct classification for the varieties was obtained under treatments that were watered daily and once in a week. Based on economic considerations, the standard forest soil and daily irrigation were subsequently adopted for screening bean germplasm for resistance to FRR. It was also found that sorghum seed as a medium for pathogen inoculation was better than the agar slurry medium. One hundred and forty seven common bean varieties were evaluated for resistance to FRR (isolate FSP-3) under screenhouse conditions. In order to confirm this resistance, 46 common bean lines selected from the screenhouse trial were further evaluated using natural inoculum in a BRR-infested field. Forty-four varieties comprising ten large-seeded, four medium-seeded and 30 small-seeded varieties showed moderate resistance to FRR; but none were resistant or immune to the disease. Based on adaptability, eight moderately resistant varieties were selected for use as parents in the study of inheritance of resistance to FRR. A 12 x 12 diallel mating design was utilised to develop 66 F1 and F2 populations, plus their reciprocal crosses, with the aim of studying the mode of inheritance of resistance to FRR. The F1 and F2 progeny evaluations showed that FRR resistance was mainly governed by additive genes in most populations. However, there were a few crosses which displayed highly significant specific combining ability (SCA) effects, implying that dominant effects were important in some populations. Maternal effects were also highly significant at both the F1 and F2 generations, suggesting that resistance was modified by cytoplasmic genes. The non-maternal effects were also significant in some populations, suggesting that the cytoplasmic genes were interacting with nuclear genes. The number of genes governing resistance to FRR varied from two to nine among the eight sources of resistance. The allelism test of resistant x resistant populations, and the observation of continuous distributions of severity scores, suggested the presence of many loci governing FRR resistance in beans. Broad sense heritability of disease resistance varied from 0.22-0.69, while heritability in the narrow sense was estimated as 0.35-0.49 in the populations. These results suggested that selection and backcrossing to both parents would be the best breeding procedures for improving resistance in the popular large-seeded bean varieties in Uganda. However, there could be complications in breeding for resistance to FRR in beans, because resistance was modified by cytoplasmic gene effects and their interaction with nuclear genes in some of the populations.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2008.

Finger millet (Eleusine coracana (L.) Gaertn. ssp. coracana) is an important food, food security and cash crop in eastern and southern Africa where small-scale farmers grow it in low input farming systems. The crop has food security, nutritional, cultural, medicinal, and economic value with high industrial potential. Little research and hardly any breeding have been done on the crop leading to low yields and low production. A project was therefore implemented in western Kenya during 2004-2007 seasons to investigate the possible breeding contributions to enhance productivity and production of the crop. The research comprised a social survey, germplasm evaluation, appraisal of ethrel as a chemical hybridising agent (CHA), genetic analysis of yield, and resistance to blast and Striga, and breeding progress in developing new finger millet varieties. A participatory rural appraisal (PRA) was conducted in three districts during 2006 to position finger millet (FM) in the farming systems, production constraints, and variety diversity and farmer preferences. The PRA established the high rating the peasant farmers gave to finger millet among crop enterprises, using it for food, cash, brewing, ceremonies and medicinal purposes. Farmers cultivated many varieties ranging from five to nine in a district, but each district had its own popular variety. Farmers used the following criteria to select new cultivars: high yield potential; early maturity; resistance to blast disease, Striga, birds, drought, and lodging; large head size, dark grain colour, and good taste. This probably indicated the willingness of farmers to adopt new varieties. Farmers identified constraints to production as blast disease, Striga, wild FM, birds, rats, termites, lack of market, labour shortage, and low yield. The farmers’ variety selection criteria and production constraints underscored the need to improve finger millet varieties. Evaluation of 310 accessions for trait variability and association conducted during 2005 long rain (LR) season at two sites revealed wide variation among the accessions for yield and secondary traits. The best accessions grain yield was above the yield potential of 5,000- 6,000kg ha-1 reported in other environments. Accessions KNE 072 (7,833kg ha-1), GBK 028463 (7,085kg ha-1), GBK 029661 (6,666kg ha-1) and FMBT ACC#42 (6,566kg ha-1) were outstanding. The data showed the opportunity to select for yield directly because of its wide variability but indirect selection could also be used to exploit seedling vigour as shown by its high correlation to yield and direct and indirect positive effects on yield through plant height and single plant yield in path analysis. The wide genetic variability among the genotypes for several traits indicated high potential to breed new and better finger millet varieties.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2008.