Log in

Relevant bibliographies by topics / Bioinformatics workflow / Dissertations / Theses

To see the other types of publications on this topic, follow the link: Bioinformatics workflow.

Dissertations / Theses on the topic 'Bioinformatics workflow'

Author: Grafiati

Published: 4 June 2021

Last updated: 1 February 2022

Create a spot-on reference in APA, MLA, Chicago, Harvard, and other styles

Select a source type:

Consult the top 27 dissertations / theses for your research on the topic 'Bioinformatics workflow.'

Next to every source in the list of references, there is an 'Add to bibliography' button. Press on it, and we will generate automatically the bibliographic reference to the chosen work in the citation style you need: APA, MLA, Harvard, Chicago, Vancouver, etc.

You can also download the full text of the academic publication as pdf and read online its abstract whenever available in the metadata.

Browse dissertations / theses on a wide variety of disciplines and organise your bibliography correctly.

1

LEMOS, MELISSA. "WORKFLOW FOR BIOINFORMATICS." PONTIFÍCIA UNIVERSIDADE CATÓLICA DO RIO DE JANEIRO, 2004. http://www.maxwell.vrac.puc-rio.br/Busca_etds.php?strSecao=resultado&nrSeq=5928@1.

Full text

Abstract:

CONSELHO NACIONAL DE DESENVOLVIMENTO CIENTÍFICO E TECNOLÓGICO<br>Os projetos para estudo de genomas partem de uma fase de sequenciamento onde são gerados em laboratório dados brutos, ou seja, sequências de DNA sem significado biológico. As sequências de DNA possuem códigos responsáveis pela produção de proteínas e RNAs, enquanto que as proteínas participam de todos os fenômenos biológicos, como a replicação celular, produção de energia, defesa imunológica, contração muscular, atividade neurológica e reprodução. As sequências de DNA, RNA e proteínas são chamadas nesta tese de biossequê

APA, Harvard, Vancouver, ISO, and other styles

2

Linke, Burkhard [Verfasser]. "Conveyor : a workflow engine for bioinformatics analyses / Burkhard Linke. Technische Fakultät." Bielefeld : Universitätsbibliothek Bielefeld, Hochschulschriften, 2012. http://d-nb.info/1020344385/34.

Full text

APA, Harvard, Vancouver, ISO, and other styles

3

Nyasulu, Jonas. "A Comparison of Vistrails and Taverna, and Workflow Interoperability." Thesis, Linköping University, Department of Computer and Information Science, 2009. http://urn.kb.se/resolve?urn=urn:nbn:se:liu:diva-21925.

Full text

Abstract:

<p>In silico experiments in the field of bioinformatics generate large amounts of data since most of the tasks are done in an exploratory fashion. Workflows are one of the many tools used by scientists to model complex tasks.The interoperability of data generated from these tools plays an important role in improving the efficiency of such tools and also in verifying results from other experiments.We aim to compare workflow systems by integrating bioinformatics data in Vistrails and Taverna. We also look at how the two systems use the open provenance model that has been developed to bring prove

APA, Harvard, Vancouver, ISO, and other styles

4

Chatzou, Maria 1985. "Large-scale comparative bioinformatics analyses." Doctoral thesis, Universitat Pompeu Fabra, 2016. http://hdl.handle.net/10803/587086.

Full text

Abstract:

One of the main and most recent challenges of modern biology is to keep-up with growing amount of biological data coming from next generation sequencing technologies. Keeping up with the growing volumes of experiments will be the only way to make sense of the data and extract actionable biological insights. Large-scale comparative bioinformatics analyses are an integral part of this procedure. When doing comparative bioinformatics, multiple sequence alignments (MSAs) are by far the most widely used models as they provide a unique insight into the accurate measure of sequence similaritie

APA, Harvard, Vancouver, ISO, and other styles

5

Marsolo, Keith Allen. "A workflow for the modeling and analysis of biomedical data." Columbus, Ohio : Ohio State University, 2007. http://rave.ohiolink.edu/etdc/view?acc%5Fnum=osu1180309265.

Full text

APA, Harvard, Vancouver, ISO, and other styles

6

Frankhouser, David E. "Methylome Analysis: From Computation Workflow Development to Implementation in a Breast Cancer Prevention Trial." The Ohio State University, 2017. http://rave.ohiolink.edu/etdc/view?acc_num=osu1512052081030923.

Full text

APA, Harvard, Vancouver, ISO, and other styles

7

Lamprecht, Anna-Lena, Tiziana Margaria, and Bernhard Steffen. "Bio-jETI : a framework for semantics-based service composition." Universität Potsdam, 2009. http://opus.kobv.de/ubp/volltexte/2010/4506/.

Full text

Abstract:

Background: The development of bioinformatics databases, algorithms, and tools throughout the last years has lead to a highly distributedworld of bioinformatics services. Without adequatemanagement and development support, in silico researchers are hardly able to exploit the potential of building complex, specialized analysis processes from these services. The Semantic Web aims at thoroughly equipping individual data and services with machine-processable meta-information, while workflow systems support the construction of service compositions. However, even in this combination, in silico rese

APA, Harvard, Vancouver, ISO, and other styles

8

Nagavaram, Ashish. "Cloud Based Dynamic Workflow with QOS For Mass Spectrometry Data Analysis." The Ohio State University, 2011. http://rave.ohiolink.edu/etdc/view?acc_num=osu1322681210.

Full text

APA, Harvard, Vancouver, ISO, and other styles

9

Socrates, Vimig. "Neuro-Integrative Connectivity: A Scientific Workflow-Based Neuroinformatics Platform For Brain Network Connectivity Studies Using EEG Data." Case Western Reserve University School of Graduate Studies / OhioLINK, 2019. http://rave.ohiolink.edu/etdc/view?acc_num=case1561655750151063.

Full text

APA, Harvard, Vancouver, ISO, and other styles

10

Ba, Mouhamadou. "Composition guidée de services : application aux workflows d’analyse de données en bio-informatique." Thesis, Rennes, INSA, 2015. http://www.theses.fr/2015ISAR0024/document.

Full text

Abstract:

Dans les domaines scientifiques, particulièrement en bioinformatique, des services élémentaires sont composés sous forme de workflows pour effectuer des expériences d’analyse de données complexes. À cause de l’hétérogénéité des ressources, la composition de services est une tâche difficile. Les utilisateurs, en composant des workflows, manquent d’assistance pour retrouver et interconnecter les services compatibles. Les solutions existantes utilisent des services spéciaux définis de manière manuelle pour gérer les conversions de formats de données entre les entrées et sorties des services dans

APA, Harvard, Vancouver, ISO, and other styles

11

GOMES, LUCIANA DA SILVA ALMENDRA. "PROVENANCE FOR BIOINFORMATICS WORKFLOWS." PONTIFÍCIA UNIVERSIDADE CATÓLICA DO RIO DE JANEIRO, 2011. http://www.maxwell.vrac.puc-rio.br/Busca_etds.php?strSecao=resultado&nrSeq=18566@1.

Full text

Abstract:

CONSELHO NACIONAL DE DESENVOLVIMENTO CIENTÍFICO E TECNOLÓGICO<br>Muitos experimentos científicos são elaborados como fluxos de tarefas computacionais, que podem ser implementados através do uso de linguagens de programação. Na área de bioinformática é muito comum o uso de scripts ad-hoc para construir fluxos de tarefas. Os Sistemas de Gerência de Workflow Científico (SGWC) surgiram como uma alternativa a estes scripts. Uma das funcionalidades desses sistemas que têm recebido bastante atenção pela comunidade científica é a captura automática de dados de proveniência. Estes permitem averiguar qu

APA, Harvard, Vancouver, ISO, and other styles

12

Moreews, François. "Concevoir et partager des workflows d’analyse de données : application aux traitements intensifs en bioinformatique." Thesis, Rennes 1, 2015. http://www.theses.fr/2015REN1S089/document.

Full text

Abstract:

Dans le cadre d'une démarche d'Open science, nous nous intéressons aux systèmes de gestion de workflows (WfMS) scientifiques et à leurs applications pour l'analyse de données intensive en bioinformatique. Nous partons de l'hypothèse que les WfMS peuvent évoluer pour devenir des plates-formes pivots capables d'accélérer la mise au point et la diffusion de méthodes d'analyses innovantes. Elles pourraient capter et fédérer autour d'une thématique disciplinaire non seulement le public actuel des consommateurs de services mais aussi celui des producteurs de services. Pour cela, nous considérons que

APA, Harvard, Vancouver, ISO, and other styles

13

Digiampietri, Luciano Antonio. "Gerenciamento de workflows cientificos em bioinformatica." [s.n.], 2007. http://repositorio.unicamp.br/jspui/handle/REPOSIP/276241.

Full text

Abstract:

Orientadores: João Carlos Setubal, Claudia Bauzer Medeiros<br>Tese (doutorado) - Universidade Estadual de Campinas, Instituto de Computação<br>Made available in DSpace on 2018-08-08T21:21:44Z (GMT). No. of bitstreams: 1 Digiampietri_LucianoAntonio_D.pdf: 2647979 bytes, checksum: cb55c9b2b4185459d26541f301c5dd5b (MD5) Previous issue date: 2007<br>Resumo: Atividades em bioinformática estão crescendo por todo o mundo, acompanhadas por uma proliferação de dados e ferramentas. Isto traz novos desafios, por exemplo, como entender e organizar esses recursos, como compartilhar e re-usar experimentos

APA, Harvard, Vancouver, ISO, and other styles

14

Doan, Trung-Tung. "Epidémiologie moléculaire et métagénomique à haut débit sur la grille." Phd thesis, Université Blaise Pascal - Clermont-Ferrand II, 2012. http://tel.archives-ouvertes.fr/tel-00778073.

Full text

APA, Harvard, Vancouver, ISO, and other styles

15

Couse, Madeline Hazel. "A bioinformatic workflow for analyzing whole genomes in rare Mendelian disease." Thesis, University of British Columbia, 2017. http://hdl.handle.net/2429/61332.

Full text

Abstract:

The vast majority of the human genome (~98%) is non-coding. A symphony of non-coding sequences resides in the genome, interacting with genes and the environment to tune gene expression. Functional non-coding sequences include enhancers, silencers, promoters, non-coding RNA and insulators. Variation in these non-coding sequences can cause disease, yet clinical sequencing in patients with rare Mendelian disease currently focuses mostly on variants in the ~2% of the genome that codes for protein. Indeed, variants in protein-coding genes that can explain a phenotype are identified in less tha

APA, Harvard, Vancouver, ISO, and other styles

16

de, Beste Eugene. "Enabling the processing of bioinformatics workflows where data is located through the use of cloud and container technologies." University of the Western Cape, 2019. http://hdl.handle.net/11394/6767.

Full text

Abstract:

>Magister Scientiae - MSc<br>The growing size of raw data and the lack of internet communication technology to keep up with that growth is introducing unique challenges to academic researchers. This is especially true for those residing in rural areas or countries with sub-par telecommunication infrastructure. In this project I investigate the usefulness of cloud computing technology, data analysis workflow languages and portable computation for institutions that generate data. I introduce the concept of a software solution that could be used to simplify the way that researchers execute

APA, Harvard, Vancouver, ISO, and other styles

17

Schlaffner, Christoph Norbert. "Proteogenomics for personalised molecular profiling." Thesis, University of Cambridge, 2018. https://www.repository.cam.ac.uk/handle/1810/275137.

Full text

Abstract:

Technological advancements in mass spectrometry allowing quantification of almost complete proteomes make proteomics a key platform for generating unique functional molecular data. Furthermore, the integrative analysis of genomic and proteomic data, termed proteogenomics, has emerged as a new field revealing insights into gene expression regulation, cell signalling, and disease processes. However, the lack of software tools for high-throughput integration and unbiased modification and variant detection hinder efforts for large-scale proteogenomics studies. The main objectives of this work are

APA, Harvard, Vancouver, ISO, and other styles

18

Robitaille, Alexis. "Detection and identification of papillomavirus sequences in NGS data of human DNA samples : a bioinformatic approach." Thesis, Lyon, 2019. http://www.theses.fr/2019LYSE1358.

Full text

Abstract:

Les papillomavirus humains (HPV) constituent une famille de petits virus à double brin d’ADN qui ont un tropisme pour les cellules épithéliales de la peau et des muqueuses. Plus de 200 types d’HPV ont été découverts, et classifiés en plusieurs genres taxonomiques en fonction de la constitution de leur séquence ADN. De part le rôle de certains HPV dans les maladies affectant les humains, allant de l’apparition de verrues anogénitales bénignes jusqu’au développement d’un cancer, il est nécessaire de développer des méthodes de détection et de caractérisation de la population d’HPV dans un échanti

APA, Harvard, Vancouver, ISO, and other styles

19

Hafez, Khafaga Ahmed Ibrahem 1987. "Bioinformatics approaches for integration and analysis of fungal omics data oriented to knowledge discovery and diagnosis." Doctoral thesis, TDX (Tesis Doctorals en Xarxa), 2021. http://hdl.handle.net/10803/671160.

Full text

Abstract:

Aquesta tesi presenta una sèrie de recursos bioinformàtics desenvolupats per a donar suport en l'anàlisi de dades de NGS i altres òmics en el camp d'estudi i diagnòstic d'infeccions fúngiques. Hem dissenyat tècniques de computació per identificar nous biomarcadors i determinar potencial trets de resistència, pronosticant les característiques de les seqüències d'ADN/ARN, i planejant estratègies optimitzades de seqüenciació per als estudis de hoste-patogen transcriptomes (Dual RNA-seq). Hem dissenyat i desenvolupat tambe una solució bioinformàtica composta per un component de costat de servidor

APA, Harvard, Vancouver, ISO, and other styles

20

Chen, Jiuqiang. "Designing scientific workflows following a structure and provenance-aware strategy." Phd thesis, Université Paris Sud - Paris XI, 2013. http://tel.archives-ouvertes.fr/tel-00931122.

Full text

Abstract:

Les systèmes de workflows disposent de modules de gestion de provenance qui collectent les informations relatives aux exécutions (données consommées et produites) permettant d'assurer la reproductibilité d'une expérience. Pour plusieurs raisons, la complexité de la structure du workflow et de ses d'exécutions est en augmentation, rendant la réutilisation de workflows plus difficile. L'objectif global de cette thèse est d'améliorer la réutilisation des workflows en fournissant des stratégies pour réduire la complexité des structures de workflow tout en préservant la provenance. Deux stratégies

APA, Harvard, Vancouver, ISO, and other styles

21

Voegele, Catherine. "Development of an integrated Information Technology System for management of laboratory data and next-generation sequencing workflows within a cancer genomics research platform." Thesis, Lyon 1, 2015. http://www.theses.fr/2015LYO10095/document.

Full text

Abstract:

L'objectif de mon travail de thèse était de développer des outils bio informatiques permettant d'améliorer la traditionnelle gestion de l'information scientifique au sein d'un grand centre de recherche et en particulier au sein d'une plateforme de génomique. Trois outils ont été développés: un cahier de laboratoire électronique, un système de gestion de l'information de laboratoire pour des applications de génomique dont le séquençage de nouvelle génération, ainsi qu'un système de gestion des échantillons pour de grandes bio-banques. Ce travail a été réalisé en étroite collaboration avec des b

APA, Harvard, Vancouver, ISO, and other styles

22

Emami, Khoonsari Payam. "Proteomics Studies of Subjects with Alzheimer’s Disease and Chronic Pain." Doctoral thesis, Uppsala universitet, Klinisk kemi, 2017. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-331748.

Full text

Abstract:

Alzheimer’s disease (AD) is a neurodegenerative disease and the major cause of dementia, affecting more than 50 million people worldwide. Chronic pain is long-lasting, persistent pain that affects more than 1.5 billion of the world population. Overlapping and heterogenous symptoms of AD and chronic pain conditions complicate their diagnosis, emphasizing the need for more specific biomarkers to improve the diagnosis and understand the disease mechanisms. To characterize disease pathology of AD, we measured the protein changes in the temporal neocortex region of the brain of AD subjects using ma

APA, Harvard, Vancouver, ISO, and other styles

23

Lin, Chien-Hung, and 林建宏. "Toward a Distributed Bioinformatics Environment - A Workflow approach." Thesis, 2004. http://ndltd.ncl.edu.tw/handle/96681746984790277756.

Full text

Abstract:

碩士<br>國立交通大學<br>資訊科學系所<br>92<br>Integration of distributed, heterogeneous biological databases and software resources continues to attract research interests, and the recent Web services movement has also generated a new wave of development of integrated bioinformatics systems. As Web service standards are still evolving, to what degree bioinformatics integration can be achieved using Web services remains a question to be answered. In this thesis, we focus on Web service orchestration aspect, and present a service orchestration framework for bioinformatics, called BioOrch, to illustrate import

APA, Harvard, Vancouver, ISO, and other styles

24

"Understanding Legacy Workflows through Runtime Trace Analysis." Master's thesis, 2015. http://hdl.handle.net/2286/R.I.29847.

Full text

Abstract:

abstract: When scientific software is written to specify processes, it takes the form of a workflow, and is often written in an ad-hoc manner in a dynamic programming language. There is a proliferation of legacy workflows implemented by non-expert programmers due to the accessibility of dynamic languages. Unfortunately, ad-hoc workflows lack a structured description as provided by specialized management systems, making ad-hoc workflow maintenance and reuse difficult, and motivating the need for analysis methods. The analysis of ad-hoc workflows using compiler techniques does not address dynami

APA, Harvard, Vancouver, ISO, and other styles

25

Saccone, Donovan Sean. "A preparative bioinformatic workflow for selection of putative genetically and epigenetically regulated loci as applied to the vitamin D receptor gene." Thesis, 2014. http://hdl.handle.net/10210/12357.

Full text

Abstract:

M.Sc. (Biochemistry)<br>The vitamin D receptor (VDR) has been implicated in communicable diseases such as tuberculosis (TB), HIV infection and leprosy, as well as development or prognosis of noncommunicable diseases such as multiple sclerosis, lupus, type I diabetes mellitus, and osteoporosis. The burden of these diseases is often higher in specific population groups, for instance the higher TB burden of African as compared to White South Africans. Besides genetics, epigenetic factors play a role in differential disease susceptibility and prognosis between population groups. To uncover the cau

APA, Harvard, Vancouver, ISO, and other styles

26

Shomroni, Orr. "Development of algorithms and next-generation sequencing data workflows for the analysis of gene regulatory networks." Doctoral thesis, 2017. http://hdl.handle.net/11858/00-1735-0000-0023-3E0C-8.

Full text

APA, Harvard, Vancouver, ISO, and other styles

27

Müller, Robert, and Erhard Rahm. "Rule-Based Dynamic Modification of Workflows in a Medical Domain." 1999. https://ul.qucosa.de/id/qucosa%3A32003.

Full text

Abstract:

A major limitation of current workflow systems is their lack of supporting dynamic workflow modifications. However, this functionality is a major requirement for next-generation systems in order to provide sufficient flexibility to cope with unexpected situations and failures. For example, our experience with data intensive medical domains such as cancer therapy shows that the large number of medical exceptions is hard to manage for domain experts. We therefore have developed a rule- based approach for partially automated management of semantic exceptions during workflow instance execution. Wh

APA, Harvard, Vancouver, ISO, and other styles

We offer discounts on all premium plans for authors whose works are included in thematic literature selections. Contact us to get a unique promo code!