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Relevant bibliographies by topics / Biophysical transition

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Academic literature on the topic 'Biophysical transition'

Author: Grafiati

Published: 31 August 2024

Last updated: 31 July 2025

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Journal articles on the topic "Biophysical transition"

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Van Dyke, Chris. "Boxing daze – using state-and-transition models to explore the evolution of socio-biophysical landscapes." Progress in Physical Geography: Earth and Environment 39, no. 5 (2015): 594–621. http://dx.doi.org/10.1177/0309133315581700.

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Critical physical geography (CPG) proposes to bridge the lingering gap between human and physical geographers. To rejuvenate conversations among different corners of the discipline about the possibility of trans-disciplinary collaboration, CPG must provide unique epistemological, methodological, and conceptual frameworks that human and physical geographers alike will find appealing, relevant, and timely. These should help them perceptively characterize, narrate, and anticipate changes in socio-biophysical landscapes. This paper outlines a conceptual framework that can be harnessed in future CP

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Larson, Ben T., Teresa Ruiz-Herrero, Stacey Lee, Sanjay Kumar, L. Mahadevan, and Nicole King. "Biophysical principles of choanoflagellate self-organization." Proceedings of the National Academy of Sciences 117, no. 3 (2020): 1303–11. http://dx.doi.org/10.1073/pnas.1909447117.

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Inspired by the patterns of multicellularity in choanoflagellates, the closest living relatives of animals, we quantify the biophysical processes underlying the morphogenesis of rosette colonies in the choanoflagellate Salpingoeca rosetta. We find that rosettes reproducibly transition from an early stage of 2-dimensional (2D) growth to a later stage of 3D growth, despite the underlying variability of the cell lineages. Our perturbative experiments demonstrate the fundamental importance of a basally secreted extracellular matrix (ECM) for rosette morphogenesis and show that the interaction of t

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UEMURA, Sotaro. "Importance of Research Field Transition with Biophysical Standpoint." Seibutsu Butsuri 52, no. 2 (2012): 096–97. http://dx.doi.org/10.2142/biophys.52.096.

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Oelschlaeger, Max. "Ecosemiotics and the sustainability transition." Sign Systems Studies 29, no. 1 (2001): 219–36. http://dx.doi.org/10.12697/sss.2001.29.1.14.

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The emerging epistemic community of ecosemioticians and the multidisciplinary field of inquiry known as ecosemiotics offer a radical and relevant approach to so-called global environmental crisis. There are no environmental fixes within the dominant code, since that code overdetermines the future, thereby perpetuating ecologically untenable cultural forms. The possibility of a sustainability transition (the attempt to overcome destitution and avoid ecocatastrophe) becomes real when mediated by and through ecosemiotics. In short, reflexive awareness of humankind's linguisticality is a necessary

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Olson, Donald B. "Biophysical dynamics of western transition zones: a preliminary synthesis." Fisheries Oceanography 10, no. 2 (2001): 133–50. http://dx.doi.org/10.1046/j.1365-2419.2001.00161.x.

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Fernandez, Fernando R., Jordan D. T. Engbers, and Ray W. Turner. "Firing Dynamics of Cerebellar Purkinje Cells." Journal of Neurophysiology 98, no. 1 (2007): 278–94. http://dx.doi.org/10.1152/jn.00306.2007.

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Knowledge of intrinsic neuronal firing dynamics is a critical first step to establishing an accurate biophysical model of any neuron. In this study we examined cerebellar Purkinje cells to determine the bifurcations likely to underlie firing dynamics within a biophysically realistic and experimentally supported model. We show that Purkinje cell dynamics are consistent with a system undergoing a saddle-node bifurcation of fixed points in the transition from rest to firing and a saddle homoclinic bifurcation from firing to rest. Our analyses account for numerous observed Purkinje cell firing pro

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Tesloianu, Nicolae Dan, Lucian Dobreci, Vlad Ghizdovat, et al. "Multifractality through Non-Markovian Stochastic Processes in the Scale Relativity Theory. Acute Arterial Occlusions as Scale Transitions." Entropy 23, no. 4 (2021): 444. http://dx.doi.org/10.3390/e23040444.

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By assimilating biological systems, both structural and functional, into multifractal objects, their behavior can be described in the framework of the scale relativity theory, in any of its forms (standard form in Nottale’s sense and/or the form of the multifractal theory of motion). By operating in the context of the multifractal theory of motion, based on multifractalization through non-Markovian stochastic processes, the main results of Nottale’s theory can be generalized (specific momentum conservation laws, both at differentiable and non-differentiable resolution scales, specific momentum

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Singh, Simron Jit, and Clemens M. Grünbühel. "Environmental relations and biophysical transition: the case of trinket island." Geografiska Annaler: Series B, Human Geography 85, no. 4 (2003): 191–208. http://dx.doi.org/10.1111/j.0435-3684.2003.00142.x.

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Lu, Yi, Amdrea K. Brown, Juewen Liu, Jing Li, and Peter J. Bruesehoff. "Biochemical and biophysical study of transition metal ion-dependent DNAzymes." Journal of Inorganic Biochemistry 96, no. 1 (2003): 182. http://dx.doi.org/10.1016/s0162-0134(03)80695-5.

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Seufferheld, Manfredo J., and Cecil Stushnoff. "SUCROSE AND DEHYDRATION INDUCE GLASS TRANSITIONS DURING CRYOPRESERVATION OF STRAWBERRY PLANTLETS." HortScience 28, no. 5 (1993): 584f—584. http://dx.doi.org/10.21273/hortsci.28.5.584f.

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Differential scanning calorimetry was used to study the effects of sucrose and dehydration on biophysical aspects during cryopreservation of strawberry plantlets, regenerated from leaf disks. Plantlets were encapsulated in alginate beads, soaked 24, 48, 72 and 96 hours in sucrose solutions (0 to 2.0 M) and dehydrated. Imbibition in 1.0 - 2.0 M sucrose and controlled desiccation influenced both ice nucleation and glass transitions during cryopreservation. A surprising discovery was the presence of an exotherm at -100C (sucrose 1.5 and 2.0 M samples imbibed for 48 hours and desiccated 4 hours).

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Dissertations / Theses on the topic "Biophysical transition"

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Colledge, Vicki Louise. "Stuructural and biophysical investigations of bacillus subtillis transition-state regulators." Thesis, University of York, 2010. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.535053.

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Valba, Olga. "Statistical analysis of networks and biophysical systems of complex architecture." Phd thesis, Université Paris Sud - Paris XI, 2013. http://tel.archives-ouvertes.fr/tel-00919606.

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Complex organization is found in many biological systems. For example, biopolymers could possess very hierarchic structure, which provides their functional peculiarity. Understating such, complex organization allows describing biological phenomena and predicting molecule functions. Besides, we can try to characterize the specific phenomenon by some probabilistic quantities (variances, means, etc), assuming the primary biopolymer structure to be randomly formed according to some statistical distribution. Such a formulation is oriented toward evolutionary problems.Artificially constructed biolog

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Nauseef, Jones Trevor. "An investigation of the molecular and biophysical properties of metastatic cells." Diss., University of Iowa, 2015. https://ir.uiowa.edu/etd/3150.

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Prostate cancer presents a significant paradox: it is very common, yet rarely fatal. To wit, the prostate is the most common non-skin tissue for cancer diagnosis in men in the United States. Despite its high incidence, fatal malignancy occurs in only a small fraction of diagnosed men. The fatal cases are characteristically defined by distant spread in the body, also known as metastasis. In order to metastasize a cancer cell must complete several sequential steps. These include degradation of and invasion through the epithelial basement membrane, typically through the loss of static intracellul

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Leekumjorn, Sukit. "Molecular Dynamics Simulations for the Study of Biophysical Processes on Biological Membranes." Diss., Virginia Tech, 2008. http://hdl.handle.net/10919/29180.

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Phospholipid bilayers constitute the primary structural element of biological membranes, and as such, they play a central role in biochemical and biophysical processes at the cellular level, including cell protection, intercellular interactions, trans-membrane transport, cell morphology, and protein function, to name a few. The properties of phospholipid bilayers are thus of great interest from both experimental and theoretical standpoints. Although experiments have provided much of the macroscopic functions and properties of biological membranes, insight into specific mechanisms at the mole

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Wang, Yin 1951. "Influences of membrane biophysical properties on the Metarhodopsin I to Metarhodopsin II transition in visual excitation." Diss., The University of Arizona, 1997. http://hdl.handle.net/10150/282520.

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Current biophysical studies of membrane proteins are centered on the relation of their structures to key biological functions of membranes in terms of lipid-protein interactions. The conformational transition of rhodopsin from Metarhodopsin I to Metarhodopsin II (Meta I-Meta II) is the triggering event for the visual process. Meta II is the activated form of the visual receptor and binds a signal transducing G protein (transducin), followed by two amplification stages which lead to generation of a visual nerve impulse. Herein, flash photolysis and surface plasmon resonance (SPR) spectroscopy t

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Stam, Carson A. "Using Biophysical Geospatial and Remotely Sensed Data to Classify Ecological Sites and States." DigitalCommons@USU, 2012. https://digitalcommons.usu.edu/etd/1389.

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Monitoring and identifying the state of rangelands on a landscape scale can be a time consuming process. In this thesis, remote sensing imagery has been used to show how the process of classifying different ecological sites and states can be done on a per pixel basis for a large landscape. Twenty-seven years' worth of remotely sensed imagery was collected, atmospherically corrected, and radiometrically normalized. Several vegetation indices were extracted from the imagery along with derivatives from a digital elevation model. Dominant vegetation components from five major ecological sites in R

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Drew, Elliot Dudley. "Biophysical and computational characterisation of the disorder-to-order structural transition of the small hydrophilic endoplasmic-reticulum associated protein, SHERP." Thesis, Birkbeck (University of London), 2018. http://bbktheses.da.ulcc.ac.uk/366/.

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This thesis explores the disorder-to-order structural transition of the small hydrophilic endoplasmic reticulum associated protein (SHERP). SHERP has been shown to be essential to the life cycle of Leishmania major, a parasite responsible for leishmaniasis which kills tens of thousands every year. The protein is almost entirely disordered in solution, but undergoes a dramatic increase in helicity upon binding to anionic lipids or detergents. Although the ordered structure of SHERP had previously been solved by solution nuclear magnetic resonance spectroscopy in the presence of sodium dodecyl s

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Kettner, Claudia, Angela Köppl, and Sigrid Stagl. "List of well-being indicators." European Commission, bmwfw, 2012. http://epub.wu.ac.at/4714/1/WWWforEurope_WPS_no002_MS30.pdf.

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This milestone presents a pool of available indicators and indicator systems which go beyond the narrow concepts of national economic accounts as well as a structuring of the indicators and indices according to central areas of well-being. The milestone builds the basis for Task 202.2, where a subset of indicators will be selected based on different theoretical frameworks, e.g. services / functionings, needs. Some of the indicators will be included in the macro-economic models in order to account for key dimensions of sustainability.<br>Series: WWWforEurope

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Kettner, Claudia, Angela Köppl, and Sigrid Stagl. "Towards an operational measurement of socio-ecological performance." European Commission, bmwfw, 2014. http://epub.wu.ac.at/4718/1/WWWforEurope_WPS_no052_MS29.pdf.

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Questioning GDP as dominant indicator for economic performance has become commonplace. For economists economic policy always aims for a broader array of goals (like income, employment, price stability, trade balance) alongside income, with income being the priority objective. The Stiglitz-Sen-Fitoussi Commission argued for extending and adapting key variables of macroeconomic analysis. International organisations such as the EC, OECD, Eurostat and UN have proposed extended arrays of macroeconomic indicators (see 'Beyond GDP', 'Compendium of wellbeing indicators', 'GDP and Beyond', 'Green Econ

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Stelzl, Lukas Sebastian. "Studying marcomolecular transitions by NMR and computer simulations." Thesis, University of Oxford, 2014. http://ora.ox.ac.uk/objects/uuid:6e4bbe06-fc58-471b-a932-d940fe78b9a5.

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Macromolecular transitions such as conformational changes and protein-protein association underlie many biological processes. Conformational changes in the N-terminal domain of the transmembrane protein DsbD (nDsbD) were studied by NMR and molecular dynamics (MD) simulations. nDsbD supplies reductant to biosynthetic pathways in the oxidising periplasm of Gram-negative bacteria after receiving reductant from the C-terminal domain of DsbD (cDsbD). Reductant transfer in the DsbD pathway happens via protein-protein association and subsequent thiol-disulphide exchange reactions. The cap loop shield

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Books on the topic "Biophysical transition"

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Csiszar, Susan A. The role of water in structural transitions of biophysical systems. 2005.

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Csiszar, Susan A. The role of water in structural transitions of biophysical systems. 2005.

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Csiszar, Susan A. The role of water in structural transitions of biophysical systems. 2005.

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(Translator), S. L. Schnur, ed. The Physics of Phase Transitions: Concepts and Applications (Advanced Texts in Physics). 2nd ed. Springer, 2006.

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Leblond, Jacques, Paul H. E. Meijer, and Pierre Papon. The Physics of Phase Transitions. Springer, 2002.

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Schnur, S. L., Paul H. E. Meijer, Jacques Leblond, and Pierre Papon. Physics of Phase Transitions: Concepts and Applications. Springer London, Limited, 2013.

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Roldán, Édgar. Irreversibility and Dissipation in Microscopic Systems. Springer, 2014.

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Irreversibility and Dissipation in Microscopic Systems. Springer, 2014.

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Book chapters on the topic "Biophysical transition"

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Lubchenco, Jane, and Peter M. Haugan. "The Ocean Transition: What to Learn from System Transitions." In The Blue Compendium. Springer International Publishing, 2023. http://dx.doi.org/10.1007/978-3-031-16277-0_12.

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AbstractThe ocean is the ultimate commons. Sustainability narratives now recognise what science continues to demonstrate—that ecosystems on land, rivers, deltas, estuaries and the ocean are intrinsically linked (Mathews et al. 2019). There is a growing consensus that the prosperity and well-being of humanity depends on the health of the ocean environment, including the ocean-climate nexus (OECD 2016; IPCC 2019). Critical indicators reveal that business as usual is going to result in the collapse of key biophysical ocean functions, with major implications for the global economy and societies (I

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Möbius, Klaus, and Daniella Goldfarb. "High-Field/High-Frequency Electron Paramagnetic Resonance Involving Single- and Multiple-Transition Schemes." In Biophysical Techniques in Photosynthesis. Springer Netherlands, 2008. http://dx.doi.org/10.1007/978-1-4020-8250-4_14.

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Nellaepalli, Sreedhar, Ottó Zsiros, László Kovács, et al. "State Transition Mechanism in Arabidopsis Thaliana: Biophysical and Proteomic Studies." In Advanced Topics in Science and Technology in China. Springer Berlin Heidelberg, 2013. http://dx.doi.org/10.1007/978-3-642-32034-7_83.

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Chudyk, Ewa. "Differential Transition State Stabilization - Nonempirical Analysis." In Encyclopedia of Biophysics. Springer Berlin Heidelberg, 2013. http://dx.doi.org/10.1007/978-3-642-16712-6_251.

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Stoll, Stefan. "Simulation of Transition-Metal EPR Spectra." In Encyclopedia of Biophysics. Springer Berlin Heidelberg, 2013. http://dx.doi.org/10.1007/978-3-642-16712-6_650.

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Rodger, Alison. "Absorption Spectroscopy and Transition Polarizations: Pictorial Description." In Encyclopedia of Biophysics. Springer Berlin Heidelberg, 2013. http://dx.doi.org/10.1007/978-3-642-16712-6_782.

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Koynova, Rumiana, and Boris Tenchov. "Phase Transitions and Phase Behavior of Lipids." In Encyclopedia of Biophysics. Springer Berlin Heidelberg, 2013. http://dx.doi.org/10.1007/978-3-642-16712-6_542.

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Wormell, Paul. "Absorption Spectroscopy: Relationship of Transition Type to Molecular Structure." In Encyclopedia of Biophysics. Springer Berlin Heidelberg, 2018. http://dx.doi.org/10.1007/978-3-642-35943-9_781-1.

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Rodger, Alison. "Absorption Spectroscopy, the Beer-Lambert Law, and Transition Polarizations." In Encyclopedia of Biophysics. Springer Berlin Heidelberg, 2018. http://dx.doi.org/10.1007/978-3-642-35943-9_782-1.

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Wormell, Paul. "Absorption Spectroscopy: Relationship of Transition Type to Molecular Structure." In Encyclopedia of Biophysics. Springer Berlin Heidelberg, 2013. http://dx.doi.org/10.1007/978-3-642-16712-6_781.

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Conference papers on the topic "Biophysical transition"

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Galpayage Dona, Kalpani Nisansala Udeni, Jia Liu, Yuhao Qiang, E. Du, and A. W. C. Lau. "Electrical Equivalent Circuit Model of Sickle Cell." In ASME 2017 International Mechanical Engineering Congress and Exposition. American Society of Mechanical Engineers, 2017. http://dx.doi.org/10.1115/imece2017-70677.

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Mature red blood cell (RBC) consists of cytoplasm, mainly normal hemoglobin (HbA) within a plasma membrane. In sickle cell disease, abnormal sickle hemoglobin (HbS) molecule polymerizes and forms into rigid fibers at low oxygen tension, which contributes to variation in the biophysical properties of sickle cells from healthy RBCs. This paper presents an electrical equivalent circuit (EEC) model of sickle cell that considers the phase transition of oxy-HbS solution to deoxy-HbS polymers. Briefly, we model the oxy-HbS solution following healthy RBCs using a resistor and deoxy-HbS fibers as a cap

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Shun, Ozaki, Shima Okada, Masanobu Manno, Yusuke Sakaue, and Masaaki Makikawa. "Non-Contact Sleep Stage Estimation Using Wireless Millimetre-Wave Sensor." In AHFE 2023 Hawaii Edition. AHFE International, 2023. http://dx.doi.org/10.54941/ahfe1004388.

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Insufficient sleep quality has significant physical and mental health impacts on humans. However, measuring sleep quality requires a Polysomnography (PSG) test at a clinical site, which requires specialised knowledge. This study used a wireless millimetre-wave, non-contact biophysical information detection sensor to estimate sleep depth. This sensor can obtain body movements and respiratory rates from millimetre-wave fluctuations. We calculated several parameters from the respiration and body movement data obtained from these sensors and applied machine learning to create a model for estimatin

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Sychev, Alexander V., Roman N. Belenkov, Dmitry N. Ukolov, Artem V. Budaev, Anastasia I. Lavrova, and Eugene B. Postnikov. "Revealing kinetics of chemical transitions in colorimetric indicators of microorganisms growth based on photometric data from a portable microbiological analyser." In Computational Biophysics and Nanobiophotonics, edited by Boris N. Khlebtsov and Dmitry E. Postnov. SPIE, 2022. http://dx.doi.org/10.1117/12.2625794.

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Ivanova, N. A., Alexander S. Rubanov, Alexei L. Tolstik, and A. V. Chaley. "Transition to chaos in an interferometer with amplitude-phase nonlinearity." In ICONO '98: Laser Spectroscopy and Optical Diagnostics--Novel Trends and Applications in Laser Chemistry, Biophysics, and Biomedicine, edited by Sergei S. Chesnokov, Valerii P. Kandidov, and Nikolai I. Koroteev. SPIE, 1999. http://dx.doi.org/10.1117/12.340060.

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Baranov, D. V., A. A. Egorov, Evgeny M. Zolotov, and Konstantin K. Svidzinsky. "Step-height and step-transition measurements with the heterodyne differential interferometer." In ICONO '98: Laser Spectroscopy and Optical Diagnostics--Novel Trends and Applications in Laser Chemistry, Biophysics, and Biomedicine, edited by Anatoli V. Andreev, Sergei N. Bagayev, Anatoliy S. Chirkin, and Vladimir I. Denisov. SPIE, 1999. http://dx.doi.org/10.1117/12.340150.

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Isaeva, E. A., Anna A. Isaeva, A. V. Pantyukov, and D. A. Zimnyakov. "Spatially resolved speckle-correlometry of sol-gel transition." In Saratov Fall Meeting 2017: Fifth International Symposium on Optics and Biophotonics: Laser Physics and Photonics XIX; Computational Biophysics and Analysis of Biomedical Data IV, edited by Vladimir L. Derbov and Dmitry E. Postnov. SPIE, 2018. http://dx.doi.org/10.1117/12.2315148.

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Anikeev, S. V., V. N. Kuliasov, V. B. Morozov, A. N. Olenin, and V. G. Tunkin. "Population and nonlinear polarization coherent changes on Raman transition due to two-photon pulse excitation." In ICONO '98: Laser Spectroscopy and Optical Diagnostics--Novel Trends and Applications in Laser Chemistry, Biophysics, and Biomedicine, edited by Konstantin N. Drabovich, V. I. Emelyanova, and Vladimir A. Makarov. SPIE, 1999. http://dx.doi.org/10.1117/12.342336.

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Emel'yanov, Vladimir I., and V. A. Fedotov. "Roughening phase transition and surface local field increase under the action of powerful laser radiation on solids." In ICONO '98: Laser Spectroscopy and Optical Diagnostics--Novel Trends and Applications in Laser Chemistry, Biophysics, and Biomedicine, edited by Konstantin N. Drabovich, V. I. Emelyanova, and Vladimir A. Makarov. SPIE, 1999. http://dx.doi.org/10.1117/12.342364.

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Zimnyakov, Dmitry A., Sergej Yuvchenko, Anna Isaeva, Elena Isaeva, and Tatiana Samorodina. "Evolution of the scattering anisotropy of aged foams in the wet-to-dry transition." In Saratov Fall Meeting 2017: Fifth International Symposium on Optics and Biophotonics: Laser Physics and Photonics XIX; Computational Biophysics and Analysis of Biomedical Data IV, edited by Vladimir L. Derbov and Dmitry E. Postnov. SPIE, 2018. http://dx.doi.org/10.1117/12.2311474.

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Schering, Jan, Sander Keemink, and Johannes Textor. "Fitting stochastic lattice models using approximate gradients." In 38th ECMS International Conference on Modelling and Simulation. ECMS, 2024. http://dx.doi.org/10.7148/2024-0366.

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Stochastic lattice models (sLMs) are computational tools for simulating spatiotemporal dynamics in physics, computational biology, chemistry, ecology, and other fields. Despite their widespread use, it is challenging to fit sLMs to data, as their likelihood function is commonly intractable and the models non-differentiable. The adjacent field of agent-based modelling (ABM), faced with similar challenges, has recently introduced an approach to approximate gradients in network-controlled ABMs via reparameterization tricks. This approach enables efficient gradient-based optimization with automati

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Reports on the topic "Biophysical transition"

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Baruah, Bipasha, Ann Kingiri, Daniel Musyoka, et al. Powering Change: The Critical Role of Women and Youth in Sustainable Energy Transformation. Institute of Development Studies, 2025. https://doi.org/10.19088/cedca.2025.001.

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How do we build economic systems that recognise and work within the biophysical limits of our finite planet while simultaneously reducing poverty and inequality? This has become a defining question of our time, and the global transition to clean energy is increasingly considered an important vehicle via which we might address this ‘trilemma.’ Concerns about environmental sustainability and fossil fuel insecurity have encouraged countries around the world to transition to low-carbon energy supplies derived from clean renewables such as solar, hydro, bioenergy, geothermal and wind. Since produci

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Thoma, David. Landscape phenology, vegetation condition, and relations with climate at Capitol Reef National Park, 2000–2019. Edited by Alice Wondrak Biel. National Park Service, 2023. http://dx.doi.org/10.36967/2297289.

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Quantitatively linking satellite observations of vegetation condition and climate data over time provides insight to climate influences on primary production, phenology (timing of growth), and sensitivity of vegetation to weather and longer-term patterns of weather referred to as climate. This in turn provides a basis for understanding potential climate impacts to vegetation—and the potential to anticipate cascading ecological effects, such as impacts to forage, habitat, fire potential, and erosion, as climate changes in the future. This report provides baseline information about vegetation pr

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Thoma, David. Landscape phenology, vegetation condition, and relations with climate at Canyonlands National Park, 2000–2019. Edited by Alice Wondrak Biel. National Park Service, 2023. http://dx.doi.org/10.36967/2299619.

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Quantitatively linking satellite observations of vegetation condition and climate data over time provides insight to climate influences on primary production, phenology (timing of growth), and sensitivity of vegetation to weather and longer-term patterns of weather referred to as climate. This in turn provides a basis for understanding potential climate impacts to vegetation—and the potential to anticipate cascading ecological effects—such as impacts to forage, habitat, fire potential, and erosion—as climate changes in the future. This report provides baseline information about vegetation prod

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