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Relevant bibliographies by topics / Carbohydrate-binding proteins

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Academic literature on the topic 'Carbohydrate-binding proteins'

Author: Grafiati

Published: 4 June 2021

Last updated: 6 September 2023

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Journal articles on the topic "Carbohydrate-binding proteins"

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Luk’yanov, P. A., O. V. Chernikov, S. S. Kobelev, I. V. Chikalovets, V. I. Molchanova, and W. Li. "Carbohydrate-binding proteins of marine invertebrates." Russian Journal of Bioorganic Chemistry 33, no. 1 (2007): 161–69. http://dx.doi.org/10.1134/s1068162007010190.

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Bardosi, A., T. Dimitri, and H. J. Gabius. "Endogenous carbohydrate-binding proteins in oligodendrogliomas." Acta Neuropathologica 76, no. 1 (1988): 55–61. http://dx.doi.org/10.1007/bf00687680.

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Copoiu, Liviu, Pedro H. M. Torres, David B. Ascher, Tom L. Blundell, and Sony Malhotra. "ProCarbDB: a database of carbohydrate-binding proteins." Nucleic Acids Research 48, no. D1 (2019): D368—D375. http://dx.doi.org/10.1093/nar/gkz860.

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Abstract Carbohydrate-binding proteins play crucial roles across all organisms and viruses. The complexity of carbohydrate structures, together with inconsistencies in how their 3D structures are reported, has led to difficulties in characterizing the protein–carbohydrate interfaces. In order to better understand protein–carbohydrate interactions, we have developed an open-access database, ProCarbDB, which, unlike the Protein Data Bank (PDB), clearly distinguishes between the complete carbohydrate ligands and their monomeric units. ProCarbDB is a comprehensive database containing over 5200 3D

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Zhao, Huiying, Ghazaleh Taherzadeh, Yaoqi Zhou, and Yuedong Yang. "Computational Prediction of Carbohydrate-Binding Proteins and Binding Sites." Current Protocols in Protein Science 94, no. 1 (2018): e75. http://dx.doi.org/10.1002/cpps.75.

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Rye, Phil D., and Nicolai V. Bovin. "Carbohydrate Affinity PAGE for the Study of Carbohydrate-Binding Proteins." BioTechniques 25, no. 1 (1998): 146–51. http://dx.doi.org/10.2144/98251rr03.

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Vierbuchen, M., M. Ortmann, and G. Uhlenbruck. "Endogenous carbohydrate-binding proteins in Pneumocystis carinii." Infection and Immunity 58, no. 9 (1990): 3143–46. http://dx.doi.org/10.1128/iai.58.9.3143-3146.1990.

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Cole, Robert N., and Birgit Zipser. "Carbohydrate-Binding Proteins in the Leech: I. Isolation and Characterization of Lactose-Binding Proteins." Journal of Neurochemistry 63, no. 1 (2002): 66–74. http://dx.doi.org/10.1046/j.1471-4159.1994.63010066.x.

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Nikiforova, Anna V., Victoria V. Golovchenko, Polina V. Mikshina, et al. "Plant Polysaccharide Array for Studying Carbohydrate-Binding Proteins." Biochemistry (Moscow) 87, no. 9 (2022): 890–902. http://dx.doi.org/10.1134/s0006297922090036.

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Töpfer-Petersen, E., J. J. Calvete, L. Sanz, and F. Sinowatz. "Carbohydrate-and heparin-binding proteins in mammalian fertilization." Andrologia 27, no. 6 (2009): 303–24. http://dx.doi.org/10.1111/j.1439-0272.1995.tb01366.x.

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Balzarini, J. "Inhibition of HIV entry by carbohydrate-binding proteins." Antiviral Research 71, no. 2-3 (2006): 237–47. http://dx.doi.org/10.1016/j.antiviral.2006.02.004.

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Dissertations / Theses on the topic "Carbohydrate-binding proteins"

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Jamal-Talabani, Sheelan. "Structural studies on carbohydrate binding modules and ice-binding proteins." Thesis, University of York, 2003. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.399582.

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Carding, S. R. "Immunochemical studies of mammalian beta-galactoside ?-binding lectins." Thesis, University of Cambridge, 1985. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.352601.

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Jiménez-Castells, Carmen 1982. "Capture and identification of carbohydrate-binding proteins by SPR and CREDEX-MS." Doctoral thesis, Universitat Pompeu Fabra, 2010. http://hdl.handle.net/10803/7237.

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Carbohydrate-binding proteins of non-immunological origin -lectins- have been recognized over the last decades as decisive players in numerous biological processes, ranging from cellcell communication, fertilization, pathogen-cell adhesion to metastasis. Consequently, there is an increasing interest in finding powerful and nanosized tools to screen for these molecules and to study their carbohydrate interactions in detail. Here, two complementary approaches are described to characterize lectin-carbohydrate interactions with high sensitivity, low sample consumption, and without the need for sam

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Wolfenden, Mark Leroy. "Using PAMAM dendrimer frameworks to investigate multivalent binding in protein-carbohydrate interactions." Thesis, Montana State University, 2009. http://etd.lib.montana.edu/etd/2009/wolfenden/WolfendenM0809.pdf.

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Polyvalent interactions in biological systems have been of great interest recently; how nature creates high affinity polyvalent binding with low monomeric affinity, is yet to be clearly understood. We have created a bivalent lectincarbohydrate binding system using dendrimers as the carbohydrate mounted scaffold and Concanavalin A (Con A) as the mannose/glucose binding lectin to investigate this mode of interaction. The relative affinities of the utilized carbohydrates toward Con A are: mannose binds 4 times stronger than glucose, and galactose shows no affinity. With these relative affinities

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Notenboom, Valerie. "Crystallographic studies of carbohydrate modifying proteins, mechanisms of action in polysaccharide binding and catalysis." Thesis, National Library of Canada = Bibliothèque nationale du Canada, 2000. http://www.collectionscanada.ca/obj/s4/f2/dsk1/tape2/PQDD_0023/NQ49935.pdf.

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Mystkowska, Agata Anna [Verfasser], Jan-Hendrik [Akademischer Betreuer] Hehemann, Jan-Hendrik [Gutachter] Hehemann, and Nicole M. [Gutachter] Koropatkin. "Carbohydrate-binding proteins from marine bacteria / Agata Anna Mystkowska ; Gutachter: Jan-Hendrik Hehemann, Nicole M. Koropatkin ; Betreuer: Jan-Hendrik Hehemann." Bremen : Staats- und Universitätsbibliothek Bremen, 2019. http://d-nb.info/1196286434/34.

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Gullfot, Fredrika. "On the engineering of proteins: methods and applications for carbohydrate-active enzymes." Doctoral thesis, KTH, Glykovetenskap, 2010. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-24296.

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This thesis presents the application of different protein engineering methods on enzymes and non-catalytic proteins that act upon xyloglucans. Xyloglucans are polysaccharides found as storage polymers in seeds and tubers, and as cross-linking glucans in the cell wall of plants. Their structure is complex with intricate branching patterns, which contribute to the physical properties of the polysaccharide including its binding to and interaction with other glucans such as cellulose. One important group of xyloglucan-active enzymes is encoded by the GH16 XTH gene family in plants, including xylog

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Dai, Huaien. "Structural and functional studies of interactions between [beta]-1,3-glucan and the N-terminal domains of [beta]-1,3-glucan recognition proteins involved in insect innate immunity." Diss., Kansas State University, 2013. http://hdl.handle.net/2097/15286.

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Doctor of Philosophy<br>Department of Biochemistry<br>Ramaswamy Krishnamoorthi<br>Insect [beta]-1,3-glucan recognition protein ([beta]GRP), a soluble receptor in the hemolymph, binds to the surfaces of bacteria and fungi and activates serine protease cascades that promote destruction of pathogens by means of melanization or expression of antimicrobial peptides. Delineation of mechanistic details of these processes may help develop strategies to control insect-borne diseases and economic losses. Multi-dimensional nuclear magnetic resonance (NMR) techniques were employed to solve the solution s

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Martin, Andrew. "Glycosylated green fluorescent protein for carbohydrate binding protein analysis." Thesis, University of Manchester, 2015. https://www.research.manchester.ac.uk/portal/en/theses/glycosylated-green-fluorescent-protein-for-carbohydrate-binding-protein-analysis(9ddae46e-b4d7-4c08-8240-94b9b804ac68).html.

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The interactions of glycoconjugates with carbohydrate binding proteins are responsible for a wide range of recognition events in vivo; including immune response, cell adhesion and signal transduction. Glycoconjugates have already found many medicinal uses as therapeutic and diagnostic agents, but their full potential is yet to be realised. Access to a variety of homogeneously glycosylated glycoproteins is essential for the study of these important carbohydrate binding events. This requires the chemical synthesis and attachment of biologically relevant glycans to unglycosylated protein scaffold

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Lehtiö, Janne. "Functional studies and engineering of family 1 carbohydrate-binding modules." Doctoral thesis, KTH, Biotechnology, 2001. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-3211.

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<p>The family 1 cellulose-binding modules (CBM1) form a groupof small, stable carbohydrate-binding proteins. These modulesare essential for fungal cellulosedegradation. This thesisdescribes both functional studies of the CBM1s as well asprotein engineering of the modules for several objectives.</p><p>The characteristics and specificity of CBM1s from the<i>Trichoderma reesei</i>Cel7A and Cel6A, along with severalother wild type and mutated CBMs, were studied using bindingexperiments and transmission electron microscopy (TEM). Datafrom the binding studies confirmed that the presence of onetrypto

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Books on the topic "Carbohydrate-binding proteins"

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Structural glycobiology. Taylor & Francis, 2013.

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Kilpatrick, David C. Handbook of animal lectins: Properties and biomedical applications : a compendium of galectins, collectins, selectins, pentraxins, and other carbohydrate-binding proteins from throughout the animal kingdom. John Wiley, 2000.

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Washington), Symposium on Molecular Recognition and Protein-Carbohydrate Interactions (1989 University of. Proceedings of the Symposium on Molecular Recognition and Protein-Carbohydrate Interactions, at the University of Washington, Seattle, Washington, July 23-29, 1989. American Crystallographic Association, 1991.

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Van Damme, Els J. M., Georg J. Seifert, and Richard Strasser, eds. Plant Glycobiology - A Sweet World of Glycans, Glycoproteins, Glycolipids, and Carbohydrate-Binding Proteins. Frontiers Media SA, 2021. http://dx.doi.org/10.3389/978-2-88971-521-3.

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Notenboom, Valerie. Crystallographic studies of carbohydrate modifying proteins: Mechanisms of action in plysaccharide binding and catalysis. 2000.

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6

Yuriev, Elizabeth, and Paul A. Ramsland. Structural Glycobiology. Taylor & Francis Group, 2012.

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Yuriev, Elizabeth. Structural Glycobiology. Taylor & Francis Group, 2012.

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Yuriev, Elizabeth, and Paul A. Ramsland. Structural Glycobiology. Taylor & Francis Group, 2012.

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9

Protein-carbohydrate interactions. American Crystallographic Association, 1991.

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Quesenberry, Michael Stephen. Molecular analysis of calcium-dependent carbohydrate-recognition domains. 1991.

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Book chapters on the topic "Carbohydrate-binding proteins"

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Brooks, S. A., M. V. Dwek, and U. Schumacher. "Carbohydrate-binding proteins (lectins)." In Functional and Molecular Glycobiology. Garland Science, 2023. http://dx.doi.org/10.1201/9781003423720-13.

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Bardosi, A., T. Dimitri, and H. J. Gabius. "Endogenous Carbohydrate-Binding Proteins in Neuro-Oncology." In Lectins and Glycoconjugates in Oncology. Springer Berlin Heidelberg, 1988. http://dx.doi.org/10.1007/978-3-642-73662-9_13.

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James-Johnson, Claudia, and Predrag Cudic. "Bicyclic Organo-Peptides as Models for Carbohydrate Binding Proteins." In Advances in Experimental Medicine and Biology. Springer New York, 2009. http://dx.doi.org/10.1007/978-0-387-73657-0_258.

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Abad-Rodríguez, José, María Elvira Brocca, and Alonso Miguel Higuero. "Glycans and Carbohydrate-Binding/Transforming Proteins in Axon Physiology." In Advances in Neurobiology. Springer International Publishing, 2022. http://dx.doi.org/10.1007/978-3-031-12390-0_7.

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Kayser, K., and H. J. Gabius. "Histomorphological Characterization of Carbohydrate-Binding Proteins in Human Lung Cancer." In Lectins and Glycoconjugates in Oncology. Springer Berlin Heidelberg, 1988. http://dx.doi.org/10.1007/978-3-642-73662-9_12.

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Bhavanandan, V. P., Sabine Puch, Xiaoxuan Guo, and Weiping Jiang. "Galectins and Other Endogenous Carbohydrate-Binding Proteins of Animal Bladder." In The Molecular Immunology of Complex Carbohydrates —2. Springer US, 2001. http://dx.doi.org/10.1007/978-1-4615-1267-7_7.

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Calvete, Juan José, Libia Sanz, and Edda Töpfer-Petersen. "Carbohydrate-Binding Proteins Involved in Gamete Interaction in the Pig." In Spermatogenesis — Fertilization — Contraception. Springer Berlin Heidelberg, 1992. http://dx.doi.org/10.1007/978-3-662-02815-5_17.

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Magnani, John L. "Determination of Glycolipid Ligands of Carbohydrate-Binding Proteins Directly on Thin Layer Chromatograms." In Gangliosides. Springer New York, 2018. http://dx.doi.org/10.1007/978-1-4939-8552-4_21.

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Kolb-Bachofen, V., and C. Egenhofer. "Neoglycoprotein-Gold Complexes as a Tool in the Study of Carbohydrate-Specific Binding Proteins." In Lectins and Glycobiology. Springer Berlin Heidelberg, 1993. http://dx.doi.org/10.1007/978-3-642-77944-2_24.

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Payal, Suchandra, Piyali Chatterjee, Subhadip Basu, Mahantapas Kundu, and Mita Nasipuri. "Comparisons of Different Feature Sets for Predicting Carbohydrate-Binding Proteins From Amino Acid Sequences Using Support Vector Machine." In Advances in Intelligent Systems and Computing. Springer India, 2012. http://dx.doi.org/10.1007/978-81-322-1038-2_44.

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Conference papers on the topic "Carbohydrate-binding proteins"

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Taga, Atsushi, Yuka Yamamoto, Rie Maruyama, and Susumu Honda. "SEARCH FOR CARBOHYDRATE-BINDING PROTEINS IN BIOLOGICAL SAMPLES BY CAPILLARY ELECTROPHORESIS." In XXIst International Carbohydrate Symposium 2002. TheScientificWorld Ltd, 2002. http://dx.doi.org/10.1100/tsw.2002.517.

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Doxey, Andrew C., Zhenyu Cheng, and Brendan J. McConkey. "Discrimination of Insoluble-Carbohydrate Binding Proteins and Their Binding Sites Using a 3D Motif Detection Method." In 2008 IEEE International Conference on Bioinformatics and Biomedicine. IEEE, 2008. http://dx.doi.org/10.1109/bibm.2008.74.

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Kalyan, N. K., S. G. Lee, W.-T. Hum, R. Hartzell, M. Levner, and P. P. Hung. "IN VITRO STUDIES ON THE BINDING OF TISSUE-TYPE PLASMINOGEN ACTIVATOR (t-PA) AND UROKINASE (u-PA) TO LIVER MEMBRANES." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1643603.

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The plasminogen activators, t-PA and u-PA, are glycoproteins known to be involved in homeostasis of the blood clotting system, and thus are of potential clinical use in the treatment of thrombosis. Several in vivo studies have shown that both t-PA and u-PA are quickly removed from the blood circulation, predominantly by the liver. The mechanism by which the liver removes these proteins is not understood. To delineate this, we conducted in vitro studies of binding of PAs or their derivatives to isolated mouse liver membranes utilizing a functional assay developed in our laboratory. The assay co

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Jewel, Yead, Prashanta Dutta, and Jin Liu. "Coarse-Grained Molecular Dynamics Simulations of Sugar Transport Across Lactose Permease." In ASME 2015 International Mechanical Engineering Congress and Exposition. American Society of Mechanical Engineers, 2015. http://dx.doi.org/10.1115/imece2015-52337.

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Sugar (one of the critical nutrition elements for all life forms) transport across the cell membranes play essential roles in a wide range of living organism. One of the most important active transport (against the sugar concentration) mechanisms is facilitated by the transmembrane transporter proteins, such as the Escherichia coli lactose permease (LacY) proteins. Active transport of sugar molecules with LacY proteins requires a proton gradient and a sequence of complicated protein conformational changes. However, the exact molecular mechanisms and the protein structural information involved

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Kitagawa, H., N. Yamamoto, G. Kosaki, and H. Yamazaki. "AN IMPORTANT ROLE OF CARBOHYDRATE MOIETIES ON CANCER CELL MEMBRANE GLYCOPROTEINS IN CANCER CELL-INDUCED PLATELET AGGREGATION." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1644667.

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Platelet aggregation induced by cancer cells may be an essential process in the development of hematogenous metastasis of cancers. A mechanism in HMV-I (human vaginal melanoma cell line)-induced platelet aggregation was studied by using monoclonal antibodies against membrane proteins of cancer cells or platelets. HMV-I cells or their membrana ractions induced platelet aggregation of human heparinized PRP, to which hirudin had no inhibitory effect. The platelet aggregation by HMV-I was completely lost after the pretreatment of the cells with 0.3U/ml neuraminidase for 60 min at 37°C. Preincubati

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Inoue, Risa, Kanako Yamada, Hiromi Sakaguchi, Saori Shibayama, Toshisuke Kawasaki, and Nobuko Kawasaki. "CARBOHYDRATE LIGANDS ON COLON CANCER CELL SURFACES INVOLVED IN MANNAN-BINDING PROTEIN DEPENDENT CELL-MEDIATED CYTOTOXICITY." In XXIst International Carbohydrate Symposium 2002. TheScientificWorld Ltd, 2002. http://dx.doi.org/10.1100/tsw.2002.668.

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Thomas, Wendy E., Evgeni V. Sokurenko, and Viola Vogel. "How Bacteria Bind More Strongly Under Mechanical Force: The Catch-Bond FimH." In ASME 2003 International Mechanical Engineering Congress and Exposition. ASMEDC, 2003. http://dx.doi.org/10.1115/imece2003-43680.

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We study a protein that responds to mechanical force in most striking manner. We demonstrate that Escherichia coli bacteria need shear stress to bind to certain tissues and model surfaces; they bind strongest precisely when the body tries to wash them off. We have determined that the protein responsible for this behavior is FimH, a ubiquitous adhesion protein in intestinal bacteria that mediates adhesion to host cells via the carbohydrate mannose. Although mechanical force noramlly decreases bond lifetimes, we have shown that the bond betweeen FimH and simple mono-mannose receptors is s “catch

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Handa, M., K. Titani, K. Takio, and Z. M. Ruggeri. "CHARACTERIZATION OF THE VON WILLEBRAND FACTOR-BINDING DOMAIN OF PLATELET MEMBRANE GLYCOPROTEIN Ib." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1642925.

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We have previously obtained immunochemical evidence that the von Willebrand factor (vWF)-binding domain of the platelet membrane glycoprotein (GP) Ib is located near the amino terminus of the a subunit (Journal of Biological Chemistry 261: 12579-12585, 1986). We have now determined the complete amino acid sequence of the 45 kDa tryptic fragment of glycocalicin that contains this domain. Purified glycocalicin was subjected to limited digestion with trypsin and the proteolytic fragments were separated by size-exclusion high-pressure liquid chromatography. Two fragments of 45 kDa and 84 kDa, resp

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Reports on the topic "Carbohydrate-binding proteins"

1

Spiegel, Yitzhak, Michael McClure, Itzhak Kahane, and B. M. Zuckerman. Characterization of the Phytophagous Nematode Surface Coat to Provide New Strategies for Biocontrol. United States Department of Agriculture, 1995. http://dx.doi.org/10.32747/1995.7613015.bard.

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Chemical composition and biological role of the surface coat (SC) of the root-knot nematodes, Meloidogyne spp. are described. SC proteins of M. incognita race 3 infective juveniles (J2) were characterized by electrophoresis and western blotting of extracts from radioiodine and biotin-labelled nematodes. J2 labelled with radioiodine and biotin released 125I and biotin-labelled molecules into water after 20 hours incubation, indicating that SC proteins may be loosely attached to the nematode. Antiserum to the principal protein reacted with the surface of live J2 and with surface proteins previou

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Morrison, Mark, Joshuah Miron, Edward A. Bayer, and Raphael Lamed. Molecular Analysis of Cellulosome Organization in Ruminococcus Albus and Fibrobacter Intestinalis for Optimization of Fiber Digestibility in Ruminants. United States Department of Agriculture, 2004. http://dx.doi.org/10.32747/2004.7586475.bard.

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Improving plant cell wall (fiber) degradation remains one of the highest priority research goals for all ruminant enterprises dependent on forages, hay, silage, or other fibrous byproducts as energy sources, because it governs the provision of energy-yielding nutrients to the host animal. Although the predominant species of microbes responsible for ruminal fiber degradation are culturable, the enzymology and genetics underpinning the process are poorly defined. In that context, there were two broad objectives for this proposal. The first objective was to identify the key cellulosomal component

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Porat, Ron, Gregory T. McCollum, Amnon Lers, and Charles L. Guy. Identification and characterization of genes involved in the acquisition of chilling tolerance in citrus fruit. United States Department of Agriculture, 2007. http://dx.doi.org/10.32747/2007.7587727.bard.

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Citrus, like many other tropical and subtropical fruit are sensitive to chilling temperatures. However, application of a pre-storage temperature conditioning (CD) treatment at 16°C for 7 d or of a hot water brushing (HWB) treatment at 60°C for 20 sec remarkably enhances chilling tolerance and reduces the development of chilling injuries (CI) upon storage at 5°C. In the current research, we proposed to identify and characterize grapefruit genes that are induced by CD, and may contribute to the acquisition of fruit chilling tolerance, by two different molecular approaches: cDNA array analysis an

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