Dissertations / Theses on the topic 'Cassava Cassava Cassava Cassava Cassava Cassava as food Cassava Plant breeding Starch'

In waste water, phosphorous (P) can exist in inorganic or organic forms. Depending on the concentration, P can cause eutrophication and severe environmental pollution. Microorganisms have the ability to use and accumulate P, so microorganisms are studied to treat P in waste water in general and wastewater from cassava starch processing plants in particular. Research results show that in the 20 samples of waste water and sludge of the plant has selected three strains of bacteria that can accumulate P in the form of granules in the cell. Among them, SHV22 has the highest P accumulation capacity, reaching 3.05x10-11 mg/cell, P removal efficiency in wastewater from cassava starch processing factory is 82.1%. The strain was identified as Bacillus amyloliquefaciens.
Trong nước thải P có thể tồn tại dưới dạng vô cơ hoặc hữu cơ. Tùy thuộc vào nồng độ, P có thể gây phú dưỡng và ô nhiễm môi trường nghiêm trọng. Vi sinh vật có khả năng sử dụng và tích lũy P, do đó vi sinh vật là đối tượng được nghiên cứu để xử lý P trong nước thải nói chung và nước thải của nhà máy chế biến tinh bột sắn nói riêng. Kết quả nghiên cứu cho thấy, trong 20 mẫu nước và bùn thải của nhà máy đã chọn lựa được 3 chủng vi khuẩn có khả năng tích lũy P dưới dạng hạt trong tế bào. Trong số đó, chủng SHV22 có khả năng tích lũy P cao nhất, đạt tới 3,05x10-11 mg/tế bào, hiệu quả loại bỏ P trong nước thải của nhà máy chế biến tinh bột sắn đạt 82,1%. Chủng đã được định danh là Bacillus amyloliquefaciens.

The aim of this research was to widen the knowledge of the physicochemical properties of cassava starch and flour and to understand the factors which influence their functional characteristics, including both genetic and environmental effects as well as processing procedures. A range of chemical and physical techniques which included the Brabender viscoamylograph, Bohlin CS rheometer, Brabender farinograph, WAXS, GPC, SEHPLC and Coulter counter have been used to examine the structural and behavioural characteristics of both cassava starch and flour. The results suggested that the functional behaviour of native cassava starches of different origins varies widely and appeared to be associated with molecular structure and the architecture of the starch granule. The viscosity and the mechanical properties of the pastes produced by gelatinization were determined by the degree of swelling and the amount and proportion of amylose and amylopectin in the solvent phase of the pastes. The amylopectin was present in the solvent phase in substantial quantities which varied between 37 and 57% of the total starch solubilized. In native cassava starches, the amylose appeared to have a high molecular weight (M, 19 x 105 - 11 x 105 ). The constituent chains of the amylopectin molecule did not vary in length with cassava starches of different origins, but their relative population did which was reflected in minor differences in the chromatographic profiles. Starch granules containing long chain amyloses and amylopectin with a high degree of branching were found to release reduced amounts of molecules into the liquid phase of the pastes, and vice versa Where the pastes contained a high proportion of amylopectin and long amylose molecules the resultant gel was surprisingly weak. Cassava starch processed to produce "sour" starch, or fermented, and sun dried starch, was found to have suffered degradation to an extent where 77-86 % of the starch was solubilized during aqueous heating. The extent of the degradation was influenced by the cassava cultivar. The "sour" starch proved superior to unfermented and fermented, oven dried starches in the production of baked baked products with an expanded texture. Starch extracted from cassava roots which had been stored for a short period, during which physiological deteriorative processes could have occurred, was found to show a slight reduction in the pasting viscosity which was not related to granular or molecular size or organization. Rural, factory-extracted starch was found to have a reduced paste viscosity as a consequence of fermentation and contamination with peel residues from the roots. Cassava flour properties were influenced by the conditions of preparation. Drying temperature, milling procedure and particle size could be selected and controlled to give cassava flours of the desired functional properties.

Neste trabalho, ingredientes naturais antimicrobianos foram adicionados em filme biodegradável (biofilme) à base de fécula de mandioca tendo como plastificantes sacarose e açúcar invertido. A seleção dos ingredientes antimicrobianos (cravo em pó, canela em pó, pimenta vermelha em pó, óleo essencial de laranja, café em pó, mel e extrato de própolis) foi conduzida por meio de um delineamento experimental (fatorial fracionado 27-3) e os biofilmes foram analisados quanto às suas propriedades de barreira (permeabilidade ao vapor de água e taxa de permeabilidade ao vapor de água) e propriedades mecânicas (resistência máxima à tração e porcentagem de alongamento na ruptura). Os biofilmes apresentaram valores inferiores aos apresentados pelo biofilme controle quanto às propriedades mecânicas. Em geral, a taxa de permeabilidade ao vapor de água nos biofilmes antimicrobianos manteve-se estatisticamente igual ao do controle. Na segunda etapa do trabalho, a otimização dos ingredientes selecionados foi realizada através de delineamento experimental, com somente adição de cravo e canela em pó, que apresentaram resultados mais promissores na etapa anterior. Foi constatado que a adição de cravo e canela em pó alterou as propriedades mecânicas, porém as alterações foram menos intensas com a adição da canela em pó do que com o cravo em pó, o que pode ser justificado pela diferença de granulometria entre eles. A taxa de permeabilidade diminuiu até certa concentração dos ingredientes (0,34% para a canela em pó e 0,20% para o cravo em pó). O efeito antimicrobiano dos biofilmes foi investigado como embalagem de fatias de pão tipo forma e foi constatado que a atividade de água dos biofilmes aumentou após 7 dias de contato. É provável que os biofilmes tenham se tornado meios propícios para o desenvolvimento de bolores e leveduras visto que estes microrganismos cresceram de forma similar ou mais intensa nas fatias de pão na presença do que na ausência dos biofilmes. A partir dos resultados obtidos, não é possível avaliar de forma clara, o efeito antimicrobiano dos ingredientes incorporados na matriz dos biofilmes contra o crescimento de bolores e leveduras em fatias de pão tipo forma.
In this work, natural antimicrobial ingredients were added to biodegradable film (biofilm) based on cassava starch with sucrose and inverted sugar as plasticizers. The selection of the antimicrobial ingredients (clove powder, cinnamon powder, red pepper powder, orange essencial oil, coffee powder, honey and propolis extract) was carried out applying an experimental design (incomplete factorial 27-3) and the barrier properties (water vapour permeability and water vapour permeability rate) and mechanical properties (tensile strength and elongation at break) of the biofilms were determined. The biofilms presented lower data regarding mechanical properties when compared to biofilm control. In general, the water vapour permeability rate of the antimicrobial biofilms was statistically equal to the control. In the second phase of the work, the optimization of the selected ingredients was carried out applying an experimental design, with the addition of only clove and cinnamon powder due to the fact that they showed the most promissing results at the previous phase. The addition of clove and cinnamon powder modified the mechanical properties but the modifications resulted by the addition of cinnamon powder were less intense tha n the ones resulted by the addition of clove powder, which can be justified by the particle size differences between them. The water vapour permeability rate decreased by specific ingredients concentration (0.34% for the cinnamon in powder and 0.20% for the clove in powder). The biofilms antimicrobial effect was investigated as packaging of pan bread slices and it was verified that the biofilms water activity increased after 7 days of contact. Probably, the biofilms became suitable substrates for yeast and mold development due to the fact that these microorganisms grew equally or more intensely in the pan bread slices when the biofilms were present in comparison to the cases of its absence. According to the results, it is not possible to evaluate clearly the antimicrobial effect of the added ingredients to the biofilm matrix against yeast and mold development in pan bread slices.

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Nas últimas décadas, têm aumentado substancialmente a quantidade de pesquisas focando no desenvolvimento e caracterização de materiais biodegradáveis, particularmente, filmes comestíveis. O uso de polímeros de fontes renováveis, preparados a partir de produtos vegetais, vem ganhando importância nessa abordagem. O concentrado de proteína de soja e amido de mandioca podem ser considerados uma alternativa aos polímeros petroquímicos. O processamento pela radiação ionizante pode ser empregado para a modificação de polímeros e macromoléculas, resultando em novos materiais com grandes perspectivas de utilização industrial. A indústria de alimentos, uma das indústrias tradicionalmente mais inovadoras, exige o desenvolvimento constante de novos produtos. A capacidade de proteínas e polissacarídeos de formar filmes, amplamente conhecida, é um ponto de partida para o desenvolvimento de novos materiais que atendam os variados requerimentos dessa pungente indústria. Neste trabalho elaboraram-se filmes a base de fécula de mandioca e proteína isolada de soja em duas proporções diferentes e posteriormente irradiados e analisados quanto às suas propriedades mecânicas, cor, absorção de água, permeabilidade ao vapor de agua, análise térmica TGA e DSC entre outros. Os filmes tornaram-se aparentemente mais solúveis e menos resistentes a perfuração com o aumento da dose de radiação aplicada. Com relação às propriedades térmicas observou-se que os filmes com maior proporção de proteína são mais resistentes. Os filmes apresentaram-se menos permeáveis na dose de 40 kGy, e, com relação a absorção de água, esta foi reduzida em função da dose de radiação. Filmes com boa resistência ao vapor de água e com reduzida absorção podem ser considerados adequados para embalagens de alimentos. A radiação mostrou ser uma ferramenta conveniente na modificação de materiais poliméricos principalmente para elaboração de filmes solúveis onde esta é uma nova tendência para embalagens bioativas.
Tese (Doutorado em Tecnologia Nuclear)
IPEN/T
Instituto de Pesquisas Energéticas e Nucleares - IPEN-CNEN/SP

L’agrobiodiversité s'étudie au niveau génotypique mais également au niveau de l'expression chimique de ce génotype, le chimiotype. Les plantes à racines et tubercules tropicales (manioc, patate douce, ignames et taros) sont multipliées par voie asexuée et les bases génétiques sont bien souvent étroites chez les cultivars traditionnels. Malgré les faibles diversités génétiques révélées à l'aide de marqueurs ADN, les chimiotypes sont très variables et leur étude est riche d’informations. Ces cultures vivrières, plantes amylacées mais aussi sources de molécules intéressantes pour les industries alimentaire et pharmaceutique, tiennent un rôle déterminant dans la garantie de la sécurité alimentaire des pays du Sud. Dans cette optique, leur amélioration génétique par voie conventionnelle est une contribution majeure aux enjeux actuels. De nombreux efforts restent néanmoins à réaliser pour analyser, compiler et disséminer les informations liées à la diversité des compositions et teneurs de plantes qui restent sous-utilisées ou non appréciées à leur juste valeur. La biofortification qui vise une amélioration des propriétés nutritionnelles de ces plantes, présente de nombreux avantages dont le principal est de ne pas modifier les comportements alimentaires tout en permettant une meilleure adaptation environnementale des nouveaux génotypes. Leur amélioration passe par une sélection des parents basée sur leurs valeurs propres et le criblage de grands nombres d'individus hybrides. Le processus est long et fastidieux. L’élaboration de nouveaux outils permettant une optimisation de cette tâche est donc nécessaire. L'analyse d'échantillons représentatifs de la variabilité chimiotypique des collections du Vanouatou, un archipel Mélanésien abritant une riche agrobiodiversité, a permis d'étudier les relations entre composés majeurs, métabolites secondaire et préférences alimentaires locales. Les corrélations mises en évidence permettent d'apporter des éléments utiles à la compréhension du processus de sélection traditionnelle. L’identification des préférences visées par ce processus aident à comprendre les goûts et les attentes des consommateurs, et donc à mieux définir les idéotypes ciblés par les programmes d'amélioration. Ce travail a permis un premier criblage chimiotypique d'un grand nombre de cultivars appartenant aux deux espèces majeures, le taro (Colocasia esculenta) et la grande igname (Dioscorea alata). L'étude des caroténoïdes et des anthocyanes a permis d’identifier un certain nombre de cultivars comme parents potentiellement intéressants pour la biofortification mais aussi pour l'exploitation commerciale directe des clones. La caractérisation des hybrides, obtenus par panmixie et pollinisations libres au cours de cycles de sélection récurrente, indique que des gains importants sont obtenus pour des composés et métabolites essentiels. Les avancées réalisées dans le cadre de ce travail, et leurs conséquences pour les programmes d'amélioration génétique en cours, sont discutées. Les perspectives de mise au point de nouveaux outils de criblage et de nouvelles méthodes de caractérisation qui permettront in fine une meilleure approche de la biofortification de ces cultures vivrières, sont aussi envisagées
Agronomic selection generates and maintains agrobiodiversity which can be regarded as an essential resource. To describe phenotypic diversity, genotypes as well as their chemical expression, chemotypes, have been widely used. Tropical root and tuber crops are vegetatively propagated and their genetic bases are often narrow. Therefore, unveiling the impressive phenotypic diversity is still rather difficult through genotyping alone, whereas chemotype studies are very informative. Tropical root crops are staples and represent a good source of compounds related to health benefits and used in food and pharmaceutical industries. Those crops have key-roles to play in food security for developing countries and so plant breeding cannot be neglected. Biofortification is effective and does not imply change of dietary behaviours. Analysing, computing and compiling data bases for chemical data on diversity of neglected crops are still needed. Biofortification involving mass selection and profiling of numerous accessions is, however, time-consuming. Thus, efficient protocols and tools facilitating this process are required. Chemotypic variability within Vanuatu germplasm was characterised through core samples from different species and relationships between primary compounds, secondary metetabolites and local preferences have been studied. Useful correlations were shown, thus clarifying traditional selection process. This process has permitted the definition of ideotypes that will be interesting for the management of breeding programmes. At least for the two most important species in Vanuatu - taro Colocasia esculenta and the greater yam - Dioscorea alata -our work is the first broad screening of germplasm. The study of carotenoid and anthocyanin content indicates that some cultivars show potential for commercial exploitation. With the aim of improving staple foods by plant breeding, we identified accessions to be selected as parents for future crosses

Cassava (Manihot esculenta Crantz) is an important food security crop in the semi-arid areas of Eastern Kenya. It provides food for more days in a calendar year than any other crop grown. Kenya has relied on varieties bred in other countries and because of this, local breeding methodologies and expertise are lacking. Access to appropriate varieties and adequate planting materials are major limiting factors to cassava production. Farmers grow late bulking landraces that take up to 18 mo to harvest. Efforts to introduce early bulking genotypes from IITA failed because of poor end-use quality. Local cassava breeding is necessary to alleviate the production constraints. Before a local breeding program can be established, farmers' preferences and production constraints must be identified and methodology appropriate to the Kenyan environment must be developed. The aims of this study were to identify farmer production constraints and preferences, to develop methods appropriate for cassava breeding in the semi-arid areas of Kenya, develop a population segregating for bulking period to estimate genetic variances that would explain the gene effects controlling yield components, and through participatory selection identify varieties that combine early bulking and preferred end-user traits. PRA tools, focus groups and individual interviews were used to identify production constraints and farmer preferences for cassava varieties. The PRA found that farmers grow 13 landraces in the area and 11 production constraints were identified and prioritised. The four most limiting in the order of importance were drought, lack of planting material, pests and diseases. Crosses between cassava varieties often do not produce much seed and the seed produced does not germinate well. Germination studies were done with open pollinated seeds to identify conditions favourable for seed germination in Kenya. The highest germination of the seeds was at 36°C. The control seeds had a higher germination percent (77%) compared to the seeds which were pre-heated at 36°C (57%). Crosses were made between selected IITA and local Kenyan genotypes following the NC 11 mating design to develop new genotypes which combine early bulking along with other farmer/end-user preferred characteristics. The hybrid progenies were evaluated in a seedling trial and clone genotypes advanced to a clonal trial and performance trial. The clonal trial was destroyed by red spider mites and cassava green mites, and only the tolerant 225 genotypes were planted in a performance trial that was harvested at 6, 7 and 8 mo after planting. The SCA effects were estimated to be 57% to 75% for most of the traits, except root number, which was mainly controlled by GCA effects (55%). Participatory selection of genotypes that combined early bulking and end-user qualities at the 7 and 8 mo after planting was done by farmers. Thirty genotypes that combined early bulking and end-user qualities were identified and ranked according to their performance in both agronomic and end-use traits using a selection index. A number of selected genotypes yielded more than three times the yield of the best parents, showing strong progress in breeding. Combining the farmers' preference aggregate score and the selection index based on the agronomic data, assisted in the final identification of the best genotypes developed in the breeding process. These results clearly demonstrated that it is possible to breed early bulking varieties with good end-use quality in the semiarid areas.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2006.

Despite the increasing number of farmers growing cassava in Zambia, yield per hectare has remained low at 5.8 t ha-1. The major constraints contributing to low yields are pests and diseases of which cassava mosaic disease (CMD) caused by East Africa cassava mosaic virus (EACMV), Africa cassava mosaic virus (ACMV) and South Africa mosaic virus (SACMV) is the most important. Breeding of cassava is restricted by limited information on viruses and associated satellites, and farmer preferences. Most of the farmers cannot manage to institute control strategies that require buying of chemicals. The most feasible option remains improving existing cultivars through resistance breeding. The study therefore was conducted to: i) establish farmers’ perception and knowledge of CMD; ii) to identify viruses of cassava occurring in Luapula province; iii) evaluate the performance of local and improved cultivars for agronomic traits; iv) evaluate the performance of F1 progenies for CMD resistance; and v) determine general combining ability and specific combining ability for CMD resistance. The studies were carried out between 2008 and 2011 at different locations in Zambia. The information generated was important in formulating a local breeding strategy for CMD resistance. A participatory rural appraisal and a structured survey was conducted in Mansa, Samfya and Mwense districts in Luapula province involving farmers to ascertain farmers’ perceptions of CMD. The results of the study showed that the majority of the respondents (97.6%) were not aware of CMD. Most of the farmers grew landraces on small pieces of land. Although, the cultivars (local and improved) were widely grown, they were susceptible to CMD. The farmers preferred cultivars with high yielding and early bulking characteristics among others. A CMD survey conducted between April and May 2009 in Samfya, Mansa, Mwense, Kawambwa and Nchelenge districts in Luapula province established East Africa cassava mosaic virus (EACMV), and Africa cassava mosaic virus (ACMV) as the most prominent viruses in the area. Symptoms of satellites were also observed in the farmers’ fields in most of the areas visited. Satellite II and III were detected in leaf samples. The CMD incidence (59.1%) and severity (2.4) was moderate across the districts surveyed. The CMD symptoms on the cassava plants were variable with plants showing mild and severe symptoms characterised with narrowing and reduced leaf blades. The transmission of CMD infections was mainly through cuttings rather than via whitefly infection which means that most of the planting materials used by the farmers were infected. Evaluation of cassava cultivars for CMD resistance was conducted in 2009/2010 and 2010/11 seasons at Mansa Research Station in Luapula province using a 4 x 4 α lattice design. Both introduced and locally grown cultivars had significant (P<0.001) differences in their reaction to CMD. Bangweulu, Namuyongo, Kalaba, Chikula, Mwakamoya, Chila7 and Chila11 were the most susceptible genotypes. Mweru, Tanganyika, and Nalumino were moderately tolerant to CMD. Eight hundred F1 genotypes developed using a North Carolina II mating design were evaluated in a 4 x 5 α lattice design in 2011 at Mansa Research Station, Luapula province to determine combining ability for reaction to CMD, yield and yield components. The plants were harvested 7 months after planting (MAP). Significant (P<0.001) general combining ability and specific general combining ability were recorded for CMD. The SCA effects were more important for CMD than GCA effects suggesting that non-additive gene action was more prominent than the additive gene action in determining CMD reaction. Parent lines with desired significant, negative GCA effects for reaction to CMD were Bangweulu, Kampolombo, Nalumino and TME2. In general, the survey and participatory rural appraisal established CMD as one of the constraints to cassava production and created a basis for the research study. The findings indicate opportunities that exist in creating genotypes with tolerance to CMD. The study identified cassava lines with resistance to CMD. The lines that expressed the above trait should be selected and tested further for release to the farmers in Zambia. Since the clonal evaluation trial was harvested at 7 MAP, there is need to investigate further for earliness trait in best performing lines in different locations.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2011.

Understanding direct and indirect defense mechanisms that enhance host plant resistance (HPR) and biological control is critical for successful development of an integrated pest management (IPM) approach. Cassava green mite (CGM) (Mononychellus tanajoa Bondar (Acari: Tetranychidae)) is a major arthropod pest of cassava (Manihot esculenta Crantz) in Africa. Strategies to control CGM include HPR and biological control by use of exotic natural enemies particularly the predatory mite Typhlodromalus aripo DeLeon (Acari: Phytoseiidae). The success of the latter depends on continuous survival of the natural enemy which requires suitable host plants and weather conditions. Various plant morphological traits have been recognized as indirect defense mechanisms that enhance HPR to CGM, and/or attract T. aripo in cassava. It was envisaged that integration of HPR and classical biological control approaches through manipulation of such indirect defense traits would lead to a more sustainable management of CGM in view of anticipated climate change. Lack of information on farmers’ perception of CGM and preferred varietal attributes, and gene action controlling the inheritance of CGM resistance also limits success of resistance breeding and adoption of varieties. This research was undertaken to gather information on farmers’ perceptions of cassava varietal attributes and cultural practices in relation to CGM resistance, identify suitable sources of resistance and environments for future breeding; and to determine the nature of gene action controlling CGM resistance and the inheritance of plant morphological traits that enhance the ability of cassava to host and support continuous survival of natural enemies. High fresh storage root yield (FSRY), high storage root dry mass percentage (SRDM%), earliness combined with extended underground storability, and resistance to foliar pests and diseases are the major factors that influence adoption and retention of genotypes by farmers. Moles, termites and CGM are the most widespread and most damaging pests. However, due to the non-conspicuous nature of CGM, its effects are under-estimated and are given limited attention by farmers. The majority of the farmers are familiar with CGM leaf damage symptoms but they cannot associate them with the actual pest. Participation of farmers in field training and field research activities helps them to know CGM. Crop rotation, intercropping, removal of shoot tips, selective pruning of infested shoots, and burning of cassava fields are some of the ways used by farmers to manage CGM. Farmers associate hairy broad-leaved, tall cassava genotypes and pink leaf pigmentation (anthocyanin) with low CGM damage. There is substantial genetic variability in the Zambian cassava germplasm for CGM resistance and associated plant morphological traits such as leaf pubescence (Pbs), leaf retention (LR), stay green (SG), tip size (TS), tip compactness, and plant height (PH), stem diameter (StD), SRDM% and FSRY. Genotypes with wide or specific adaptability for these traits have been identified, and should be recommended for general or localized production and for use as sources of desired genes in crop improvement. Genotypes L9.304/147, 92/000, TME2, 4(2)1425, I60/42 and L9.304/175 combine wide adaptability with high levels of resistance to CGM. Genotypes Kapeza, L9.304/147 and 4(2)1425 are able to produce 13-15 t ha ¯¹ at 9 months after planting suggesting their potential for early bulking. This study has shown that both additive and non-additive gene effects play a role in the expression of CGM resistance and associated plant morphological traits. The best combinations of parents for resistance against CGM were 4(2)1425 x L9.304/147 and Mweru x L9.304/147, while L9.304/147 x I92/000 displayed combined resistance to CGM and cassava mosaic disease (CMD). The resistance of cassava to CGM is positively correlated with Pbs, LR, and TS, SG, PH, StD. Overall, the study has shown that there is wide diversity in the expression of valuable indirect defense traits among genotypes, indicating that there is scope for integration of biological control and host plant resistance for CGM in Zambia. The release of genotypes that exhibit high level of intra-season and inter-season stability for enhanced expression of LR, SG, and Pbs will minimize the impact of CGM on FSRY and SRDM% that results from seasonal effects. Such genotypes should also provide habitat for and thus help to ensure the survival of T. aripo in cassava fields. The study has contributed to the promotion of food security through identification of early-bulking genotypes which also have good potential for extended underground storability of roots. Early-bulking, high FSRY and SRDM% and SRR resistance are farmer-preferred traits. Therefore, enhancement of such traits through plant breeding is likely to increase the adoption of new genotypes by farmers.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2012.

Cassava (Manihot esculenta Crantz ssp. esculenta) is the second most important food crop and a main source of income for the rural communities with potential for industrial use in the coastal region of Kenya. However, its productivity of 5 to 9 t ha-1 is low due to the low yield potential of the local cassava landraces caused by cassava brown streak disease (CBSD) among other biotic and abiotic constraints. Breeding for CBSD resistant varieties with farmer desired characteristics is hampered by limited information on the current status of the disease and farmers’ preferred characteristics of new CBSD resistant genotypes. In addition, there is a lack of an effective inoculation technique for cassava brown streak virus (CBSV) for screening genotypes for CBSD resistance. Information about the general combining ability (GCA) and specific combining ability (SCA) for CBSD above and below ground symptoms, fresh biomass yield (FBY) and fresh storage root yield (FSRY) (kg plant-1), harvest index (HI), dry matter % (DM %) and picrate score (PS) is limited and conflicting especially for the cassava germplasm in Kenya. These studies were carried out to update information on the status of CBSD, farmer’s preferences for cassava genotypes, and identify the most effective CBSV inoculation technique. In addition, the studies aimed to: determine the GCA and SCA for, and gene action controlling, the incidence and severity of above ground CBSD, root necrosis, FBY, FSRY, HI, DM %, and PS; and identify CBSD resistant progeny with farmers’ desired characteristics. A survey carried out in three major cassava-growing divisions in Kilifi, Kwale and Malindi Districts indicated that there was potential to increase production and productivity by increasing the area under cassava production and developing CBSD resistant genotypes that are early maturing, high yielding and sweet. In addition, CBSD was widely distributed, being present in 98.0% of the farms surveyed at a mean incidence of 61.2%. However, 99.0% of farmers interviewed lacked awareness and correct information about the disease. The genetic variability of cassava within the farms was low as the majority of farmers grew one or two landraces. Highly significant differences (P < 0.01) were observed among inoculation techniques for CBSV for which the highest infection rate of up to 92.0% was observed in plants inoculated by wedge grafting infected scion. Highly significant differences (P < 0.01) were observed among genotypes, between sites and their interaction for incidence of CBSD and root necrosis, while the differences among genotypes and the interaction between genotypes and the period of ratings were highly significant (P < 0.01) for the severity of CBSD and root necrosis. Above ground CBSD symptoms were not always associated with below ground CBSD symptoms and below ground CBSD symptoms were more severe at 12 months after planting (MAP) than at 6 MAP. Therefore, selecting cassava genotypes with resistance to below ground CBSD is more important than selection based on resistance to above ground CBSD and should be done after 12 months. Genotypes 5318/3 (exotic) followed by Msa140 and Plot4 (both local) had high resistance and can be used as new sources of resistance to root necrosis. Both GCA and SCA effects were highly significant with GCA sums of squares (SS) predominant over the SCA SS for most traits evaluated except for DM % at the clonal stage. These results indicate that although additive and non-additive genetic effects are involved in the inheritance of these traits, the additive genetic effects are more important except for DM %. Therefore breeding for CBSD-resistant genotypes that have characteristics desired by farmers in the coastal region of Kenya can be achieved through recurrent selection and gene pyramiding followed by participatory selection or use of a selection index that incorporates characteristics considered important by farmers.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2008.

Participation of farmers in plant breeding programmes has been reported to increase breeding efficiency. Farmers’ participation bridges the gap between variety development and dissemination and provides an opportunity for farmers to select varieties they prefer. The breeders on the others hand learn more about the farmers’ preferences and the environment in which the new varieties will be grown. However, the advantages of participatory breeding can best be realized when farmers’ indigenous technical knowledge (ITK) and experience complement the breeder’s scientific knowledge and skills. Cassava (Manihot esculenta Crantz) is a clonally propagated crop grown in diverse environments by small scale farmers for subsistence. Information on the roles of farmers and breeders at various stages of breeding and their ability to effectively participate in breeding programmes is limited. The objectives of this study were to determine: (1) cassava farmers’ preferences, production constraints and systems; (2) farmers’ selection criteria of cassava varieties; (3) genetic inheritance of farmer preferred traits; (4) how farmers and breeders complement each other at all stages and activities of cassava breeding. Participatory rural appraisal was conducted in three purposefully sampled districts of western Kenya based on ethnicity and agro-ecology. The results reveal that cassava is predominantly grown by small scale farmers with mean land size of 1.6 ha mainly under mixed cropping system for subsistence. The storage roots are eaten either after boiling or processing to flour. The majority of farmers (over 60%) are aware of the improved varieties but adoption rate is low (18% in some districts). The effects of pests and diseases, and the lack of high yielding varieties, capital, land, and disease free planting material are the most important constraints to cassava production. Farmers prefer tall, high yielding varieties that are resistant to diseases and pests, early maturing and long underground storability of harvestable storage roots. The districts surveyed significantly differed in popularity of utilization methods, traits preferences and relative ranking of the production constraints indicative of differences in ethnicity and agro-ecology. Three farmer groups from the three districts selected in western Kenya were used to study farmers’ variety selection criteria based on their own indigenous technical knowledge (ITK). The groups evaluated 15 (10 landraces and five improved) popular cassava varieties with concealed identities on their farms. The results revealed that farmers have effective methods of selecting varieties for most of their preferred traits. However, ITK alone cannot be used to evaluate all the important traits, such as cyanide content. The genetic inheritance of farmer preferred traits was determined through a genetic study. Six landraces and four improved varieties popular in western Kenya were crossed using the North Carolina mating design II to generate 24 full-sib families. The 24 families, represented by 40 siblings each, were evaluated at two sites, Kakamega and Alupe research station farms, in a 24 x 40 a-lattice design. General combining ability (GCA) and specific combining ability (SCA) mean squares were significant (P<0.05) for all traits evaluated except dry matter content and cyanide content. However, non-additive gene action predominated over additive gene for cassava mosaic disease (CMD) resistance, height to first branching, total number of storage roots per plant and fresh storage root yield in all environments. The best crosses were not necessarily obtained from parents with high general combining ability confirming the presence of non-additive gene action. The best performing parents per se did not necessarily have high GCA effects implying that selection based on the per se performance of parents may not always lead to development of superior hybrids. The clonal evaluation trial (CET) was established at Alupe research station and evaluated by the breeder and farmers from two districts independently. Three selection criteria were tested to determine the most appropriate approach to selection of varieties that meet both farmers’ and breeder’s preferences. The selection criteria were; farmers’ independent selection index (SI) derived from farmers’ selection criteria from each district, breeder’s negative selection and independent SI, and a participatory SI which combines farmers’ and breeder’s selection criteria. There was 14% overlap among the top 100 varieties selected by farmers from all districts and the breeder when independent SI were used. However, there was 49% overlap among the top 100 varieties selected by farmers using participatory SI and the breeder’s SI. The farmers and the breeder have a role to play in the variety development process. Varieties with traits preferred by both the farmers and the breeder are likely to enhance breeding efficiency and effectiveness.
Thesis (Ph.D.)-University of KwaZulu-Natal, Pietermaritzburg, 2011.

This study focuses on applying Nuclear Magnetic Resonance (NMR) to differentiate heterogeneous domains of starch Mobility and distribution of water and starch chains in cassava starch from crops grown in drought and rainy reasons, harvested at 6 months and 12 months, were investigated by deuterium (2H) solid state NMR and proton (1H) spin-spin relaxation time (T 2) distributions. Changes in water and starch chain mobility with heating, freezing, and acid hydrolysis were also studied. In a very low moisture range (<5% dry basis), all water present was immobile (rigid) in both drought and rainy cassava (A-type crystals), and potato starches (B-type crystal). Thus, the amount of bound water was irrespective of degrees of crystallinity and crystal types. The “Monolayer” value estimated from water sorption isotherms (7–9% dry basis) over-estimated the level of bound water in starch (when compared with NMR data). With increasing water content, T, decreased to a minimum at a moisture range of 14–17% (dry basis) marking its onset of molecular plasticization of the starch chains. Packed beds of starch granules (54% water, dry basis) were subjected to heating and freezing treatments. NMR T2 distributions of water and starch protons were characterized with a continuous model. Intragranular water (T2 ∼ 3 ms, disappeared below 0°C) and extragranular water (T2 ∼ 20 ms) were observed. An extra long T2 (∼100 ms) population (postulated as water associated with leached amylose) was developed upon gelatinization. The swelling and melting of starch from the drought crop were shifted to a higher temperature than those from the rainy crop resulting from a possible closer packing of rigid amylopectin and/or amylose chains. Upon gelatinization, rigid amylopectin (T2 ∼ 10 μs) disappeared, while the mobile amylopectin (in the amorphous region of semicrystalline lamellae, T2 ∼ 1 ms) increased. An additional fraction with very long T 2 (∼50 ms) emerged at 65°C and above indicating an increase in mobile/soluble starch. This study demonstrated a possible use of NMR to monitor changes in starch chains and related water mobility in intact starch granules, which is a unique feature not offered by other methods.

Spine title: Interactions between plants and mites
Includes journal article by the author
Bibliography: leaves [1]-[9]
viii, 98, [110] leaves : ill. (some col.) ; 30 cm.
Title page, contents and abstract only. The complete thesis in print form is available from the University Library.
Thesis (Ph.D.)--University of Adelaide, 1988