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Journal articles on the topic 'Clostridiaceae'

Author: Grafiati

Published: 4 June 2021

Last updated: 26 July 2025

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1

Wüst, Pia K., Marcus A. Horn, and Harold L. Drake. "Clostridiaceae and Enterobacteriaceae as active fermenters in earthworm gut content." ISME Journal 5, no. 1 (2010): 92–106. http://dx.doi.org/10.1038/ismej.2010.99.

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2

Carter, Scott D., Kitty Cardwell, Andres Espindola Camacho, and Ishtar Silva Lara. "91 Electronic probes for assessment of changes in gastrointestinal microbiome in nursery pigs." Journal of Animal Science 98, Supplement_3 (2020): 25–26. http://dx.doi.org/10.1093/jas/skaa054.045.

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Abstract Gut microbiota play an important role in extraction, synthesis and absorption of nutrients. Commensal bacteria prevent pathogenic bacteria colonization and maintain intestinal epithelium integrity. The most common families of commensal bacteria in nursery pigs are Prevotellaceae, Clostridiaceae, Erysipelotrichaceae, Lachnospitaceae, Lactobacillaceae, Ruminicoccaceae and Streptoccocaceae. Understanding the microbial abundance shifts that causes health disruption leading to diarrhea and stunted growth performance can be of great benefit for developing mitigation strategies. Next generat

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3

Dai, Xin, Yu-Xuan Han, Qiu-Yi Shen, et al. "Effect of Food Restriction on Food Grinding in Brandt’s Voles." Animals 13, no. 21 (2023): 3424. http://dx.doi.org/10.3390/ani13213424.

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Food grinding is supposed to be influenced by multiple factors. However, how those factors affecting this behavior remain unclear. In this study, we investigated the effect of food restriction on food grinding in Brandt’s voles (Lasiopodomys brandtii), as well as the potential role of the gut microbiota in this process, through a comparison of the variations between voles with different food supplies. Food restriction reduced the relative amount of ground food to a greater extent than it lowered the relative food consumption, and altered the abundance of Staphylococcus, Aerococcus, Jeotgalicoc

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Zhang, Jing, Junxi Hu, Xiaobo Zhang, and Xiang Zeng. "Draft Genome Sequence of Anaerobic Fermentative Bacterium Anaeromicrobium sediminis DY2726D." Genome Announcements 6, no. 6 (2018): e00002-18. http://dx.doi.org/10.1128/genomea.00002-18.

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ABSTRACT Here, we report the draft genome sequence of Anaeromicrobium sediminis DY2726D, isolated from a west Pacific Ocean sediment sample. The genome comprises 4,710,590 bp in 56 contigs, with a G+C content of 31.2%. A total of 3,811 protein-coding sequences were predicted. The genome annotation revealed that DY2726D may represent a marine type of Clostridiaceae.

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Nguyen, Thuong T., Ayumi Miyake, Tu T. M. Tran, Takeshi Tsuruta, and Naoki Nishino. "The Relationship between Uterine, Fecal, Bedding, and Airborne Dust Microbiota from Dairy Cows and Their Environment: A Pilot Study." Animals 9, no. 12 (2019): 1007. http://dx.doi.org/10.3390/ani9121007.

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The aim of this study was to characterize uterine, fecal, bedding, and airborne dust microbiota from postpartum dairy cows and their environment. The cows were managed by the free-stall housing system, and samples for microbiota and serum metabolite assessment were collected during summer and winter when the cows were at one and two months postpartum. Uterine microbiota varied between seasons; the five most prevalent taxa were Enterobacteriaceae, Moraxellaceae, Ruminococcaceae, Staphylococcaceae, and Lactobacillaceae during summer, and Ruminococcaceae, Lachnospiraceae, Bacteroidaceae, Moraxell

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Toledo-Alarcón, Javiera, Laura Fuentes, Claudia Etchebehere, Nicolas Bernet, and Eric Trably. "Glucose electro-fermentation with mixed cultures: A key role of the Clostridiaceae family." International Journal of Hydrogen Energy 46, no. 2 (2021): 1694–704. http://dx.doi.org/10.1016/j.ijhydene.2020.10.042.

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7

Fonknechten, Nuria, Alain Perret, Nadia Perchat, et al. "A Conserved Gene Cluster Rules Anaerobic Oxidative Degradation of l-Ornithine." Journal of Bacteriology 191, no. 9 (2009): 3162–67. http://dx.doi.org/10.1128/jb.01777-08.

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ABSTRACT For the ornithine fermentation pathway, described more than 70 years ago, genetic and biochemical information are still incomplete. We present here the experimental identification of the last four missing genes of this metabolic pathway. They encode l-ornithine racemase, (2R,4S)-2,4-diaminopentanoate dehydrogenase, and the two subunits of 2-amino-4-ketopentanoate thiolase. While described only for the Clostridiaceae to date, this pathway is shown to be more widespread.

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8

Buttenschoen, Jonas, Vlad Pavel, Alexander Mehrl, et al. "Bacterial Infection of an Alveolar Echinococcus Cyst from C. perfringens Septicemia: A Case Report and Review of the Literature." Medicina 59, no. 10 (2023): 1828. http://dx.doi.org/10.3390/medicina59101828.

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Background and Objectives: Alveolar echinococcosis (AE) is a highly variable disease able to present as structurally diverse cysts in different organs based on the host’s immunological state as well as the time between diagnosis and the primary infection. Bacterial superinfections, especially with anaerobic pathogens from the Clostridiaceae genus, can further alter the radiological findings due to pneumobilia, newly formed abscess formations, and inflammatory changes. Materials and Methods: We present a case of a 71-year-old Caucasian male admitted to our intensive care unit with septic shock,

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9

Kaburova, A. N., O. M. Drapkina, S. M. Yudin, et al. "The relationship between gut microbiota, chronic systemic inflammation, and endotoxemia in patients with heart failure with preserved ejection fraction." Cardiovascular Therapy and Prevention 21, no. 9 (2022): 3315. http://dx.doi.org/10.15829/1728-8800-2022-3315.

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Aim. To study the relationship between the abundance of the genera in the gut microbiota (GM) and levels of serum biomarkers of chronic systemic inflammation and endotoxemia in patients with HFpEF.Material and methods. The composition of GM among 42 patients with HFpEF (men, 57,1%) was assessed by 16S rRNA sequencing. The median age was 67,0 years, interquartile range [64,0; 71,5] years. Correlation and multivariate regression analysis (with adjustments for sex and age) of relationships between the relative abundance of intestinal bacteria and the concentrations of serum biomarkers including h

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10

Marti, Romain, Patrick Dabert, and Anne-Marie Pourcher. "Pig Manure Contamination Marker Selection Based on the Influence of Biological Treatment on the Dominant Fecal Microbial Groups." Applied and Environmental Microbiology 75, no. 15 (2009): 4967–74. http://dx.doi.org/10.1128/aem.02791-08.

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ABSTRACT The objective of this study was to identify a microbial marker for pig manure contamination. We quantified the persistence of four dominant bacterial groups from the pig intestinal tract throughout manure handling at 10 livestock operations (including aerobic digestion) by using molecular typing. The partial 16S rRNA genes of Bacteroides-Prevotella, Eubacterium-Clostridiaceae, Bacillus-Streptococcus-Lactobacillus (BSL), and Bifidobacterium group isolates were amplified and analyzed by capillary electrophoresis single-strand conformation polymorphism. The most dominant bacterial popula

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11

Dania, Margaret I., Bahram Faraji, and James Wachira. "Micronutrient Biosynthesis Potential of Spontaneous Grain Fermentation Microbiomes." International Journal of Environmental Research and Public Health 19, no. 24 (2022): 16621. http://dx.doi.org/10.3390/ijerph192416621.

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Fermented foods play an important role in the human diet and particularly so in under-resourced environments where cold preservation is not attainable due to irregular supply of electricity. Fermented foods are reported to support gut health by contributing probiotics. The purpose of this study was to investigate the microbial diversity and metabolic potential of spontaneous millet fermentation. The literature in the field was reviewed and analyses were conducted on publicly available Sequence Read Archive (SRA) datasets. Quality analysis was performed with FastQC, and operational taxonomic un

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Tigaud, S., M. Jouve, N. Iermann, and P. Combe. "Identification et typage intra-especes des Clostridiaceae. Electrophorèse des extraits protéiques totaux sur gel de polyacrylamide." Médecine et Maladies Infectieuses 20 (December 1990): 93–96. http://dx.doi.org/10.1016/s0399-077x(05)80067-8.

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Liu, Xin, Jia Wang, Lei Yue та ін. "Biosynthesis of high-purity γ-MnS nanoparticle by newly isolated Clostridiaceae sp. and its properties characterization". Bioprocess and Biosystems Engineering 38, № 2 (2014): 219–27. http://dx.doi.org/10.1007/s00449-014-1261-y.

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14

Hong, Heeji, So-Jeong Kim, Ui-Gi Min, et al. "Anaerosolibacter carboniphilus gen. nov., sp. nov., a strictly anaerobic iron-reducing bacterium isolated from coal-contaminated soil." International Journal of Systematic and Evolutionary Microbiology 65, Pt_5 (2015): 1480–85. http://dx.doi.org/10.1099/ijs.0.000124.

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A strictly anaerobic, mesophilic, iron-reducing bacterial strain, IRF19T, was isolated from coal-contaminated soil in the Republic of Korea. IRF19T cells were straight, rod-shaped, Gram-staining-negative and motile by means of flagella. The optimum pH and temperature for their growth were determined to be pH 7.5–8.0 and 40 °C, while the optimum range was pH 6.5–10.0 and 20–45 °C, respectively. Strain IRF19T did not require NaCl for growth but it tolerated up to 2 % (w/v). Growth was observed with yeast extract, d-glucose, d-fructose, d-ribose, d-mannitol, d-mannose, l-serine, l-alanine and l-i

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15

Pi, Ruo-Xi, Wen-Wu Zhang, Ming-Xu Fang, et al. "Oceanirhabdus sediminicola gen. nov., sp. nov., an anaerobic bacterium isolated from sea sediment." International Journal of Systematic and Evolutionary Microbiology 63, Pt_11 (2013): 4277–83. http://dx.doi.org/10.1099/ijs.0.051243-0.

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A novel anaerobic bacterium, designated NH-JN4T was isolated from a sediment sample collected in the South China Sea. Cells were Gram-stain-positive, spore-forming, peritrichous and rod-shaped (0.5–1.2×2.2–7 µm). The temperature and pH ranges for growth were 22–42 °C and pH 6.0–8.5. Optimal growth occurred at 34–38 °C and pH 6.5–7.0. The NaCl concentration range for growth was 0.5–6 % (w/v) with an optimum of 2.5 %. Catalase and oxidase were not produced. Substrates which could be utilized were peptone, tryptone, yeast extract, beef extract and glycine. Main fermentation products from PYG medi

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16

Lu, Jiangrang, Umelaalim Idris, Barry Harmon, Charles Hofacre, John J. Maurer, and Margie D. Lee. "Diversity and Succession of the Intestinal Bacterial Community of the Maturing Broiler Chicken." Applied and Environmental Microbiology 69, no. 11 (2003): 6816–24. http://dx.doi.org/10.1128/aem.69.11.6816-6824.2003.

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ABSTRACT The diversity of bacterial floras in the ilea and ceca of chickens that were fed a vegetarian corn-soy broiler diet devoid of feed additives was examined by analysis of 1,230 partial 16S rRNA gene sequences. Nearly 70% of sequences from the ileum were related to those of Lactobacillus, with the majority of the rest being related to Clostridiaceae (11%), Streptococcus (6.5%), and Enterococcus (6.5%). In contrast, Clostridiaceae-related sequences (65%) were the most abundant group detected in the cecum, with the other most abundant sequences being related to Fusobacterium (14%), Lactoba

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17

Hadjadj, L., M. Tidjani Alou, C. Sokhna, J. C. Lagier, D. Raoult, and J. M. Rolain. "Genome sequence and description of Desnuesiella massiliensis gen. nov., sp. nov. a new member of family Clostridiaceae." New Microbes and New Infections 11 (May 2016): 84–90. http://dx.doi.org/10.1016/j.nmni.2016.03.003.

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18

BAIMA, Diego Cardoso, Nayara Salgado CARVALHO, Ricardo Correa BARBUTI, and Tomas NAVARRO-RODRIGUEZ. "ASSESSMENT OF THE INTESTINAL MICROBIOTA IN ADULTS WITH EROSIVE ESOPHAGITIS." Arquivos de Gastroenterologia 58, no. 2 (2021): 168–74. http://dx.doi.org/10.1590/s0004-2803.202100000-29.

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ABSTRACT BACKGROUND: The intestinal microbiota influences the appropriate function of the gastrointestinal tract. Intestinal dysbiosis may be associated with a higher risk of esophageal lesions, mainly due to changes in gastroesophageal motility patterns, elevation of intra-abdominal pressure, and increased frequency of transient relaxation of the lower esophageal sphincter. OBJECTIVE: The aim of this study was to evaluate the intestinal microbiota in individuals with erosive esophagitis and in healthy individuals using metagenomics. METHODS: A total of 22 fecal samples from adults aged betwee

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19

Rezgui, Raja, Zouhaier Ben Ali Gam, Said Ben Hamed, et al. "Sporosalibacterium faouarense gen. nov., sp. nov., a moderately halophilic bacterium isolated from oil-contaminated soil." International Journal of Systematic and Evolutionary Microbiology 61, no. 1 (2011): 99–104. http://dx.doi.org/10.1099/ijs.0.017715-0.

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A novel strictly anaerobic, moderately halophilic and mesophilic bacterium, designated strain SOL3f37T, was isolated from a hydrocarbon-polluted soil surrounding a deep petroleum environment located in south Tunisia. Cells of strain SOL3f37T stained Gram-positive and were motile, straight and spore-forming. Strain SOL3f37T had a typical Gram-positive-type cell-wall structure, unlike the thick, multilayered cell wall of its closest relative Clostridiisalibacter paucivorans. The major fatty acids were iso-C15 : 0 (41 %), iso-C14 : 0 3-OH and/or iso-C15 : 0 dimethyl acetal (21.6 %), iso-C13 : 0 (

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20

Wang, Xiaofan, Tsung Cheng Tsai, Charles V. Maxwell, and Jiangchao Zhao. "83 Lifelong dynamics of the swine gut microbiome: from birth to market." Journal of Animal Science 97, Supplement_2 (2019): 48. http://dx.doi.org/10.1093/jas/skz122.087.

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Abstract Despite the recent advances in the swine gut microbiomes during different growth stages, a comprehensive longitudinal study of the lifelong dynamics of the swine gut microbiome is lacking. To fill this gap of knowledge, we selected seventeen piglets (PIC29*380) that were born on the same date from three sows. We collected a total of 274 rectal swabs during lactation (d 0, 11, 20), nursery (d 27, 33, 41, 50, 61), growing (d 76, 90, 104, 116), and finishing (d 130, 146, 159, and 174) stages. Samples were extracted using the Powersoil DNA isolation kit (Qiagen, Hilden, Germany) and seque

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Saraphol, Bhuripit, Woranich Hinthong, Peerut Chienwichai, et al. "Analysis of the fecal microbiome and metabolome in dairy cows with different body condition scores." PLOS ONE 20, no. 3 (2025): e0319461. https://doi.org/10.1371/journal.pone.0319461.

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Holstein Friesian is the most popular breed of dairy cows worldwide due to its exceptional milk production capabilities. In dairy cow management, the body condition score (BCS) is a useful tool, serving as a reliable indicator of a cow’s nutritional status and overall health. It is determined via a subjective visual and tactile assessment of fat cover and muscle mass. A low BCS is associated with decreased milk production and fertility. While genetic and nutritional factors have previously been associated with BCS, their effects are often moderate. In this study, we compared the fecal microbio

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22

Nomura, Toshiyuki, Hideaki Asano, Toshiyuki Takayama, Azusa Naimen, Hayato Tokumoto, and Yasuhiro Konishi. "Isolation of Hydrogen-Producing Bacteria Suitable for Immobilization from Anaerobic Sludge." Advanced Materials Research 772 (September 2013): 849–54. http://dx.doi.org/10.4028/www.scientific.net/amr.772.849.

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Highly efficient hydrogen-producing anaerobic microflora was enriched from anaerobic sludge obtained from a methane fermentation plant, with soluble starch as substrate. The effect of culture medium pH on hydrogen production capacity and microbial community was investigated using a batch reactor equipped with a pH controller. The optimal pH was 5.0, the hydrogen yield was 2.59 mol/mol-glucose, and the maximum hydrogen production rate was 123 mL/L-culture/h. Partial 16S rDNA sequencing placed the isolated strain within the Clostridiaceae family. When the isolated strain adhered to polymer resin

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23

Bermingham, Emma N., Paul Maclean, David G. Thomas, Nicholas J. Cave, and Wayne Young. "Key bacterial families (Clostridiaceae, Erysipelotrichaceae and Bacteroidaceae) are related to the digestion of protein and energy in dogs." PeerJ 5 (March 2, 2017): e3019. http://dx.doi.org/10.7717/peerj.3019.

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BackgroundMuch of the recent research in companion animal nutrition has focussed on understanding the role of diet on faecal microbiota composition. To date, diet-induced changes in faecal microbiota observed in humans and rodents have been extrapolated to pets in spite of their very different dietary and metabolic requirements. This lack of direct evidence means that the mechanisms by which microbiota influences health in dogs are poorly understood. We hypothesised that changes in faecal microbiota correlate with physiological parameters including apparent macronutrient digestibility.MethodsF

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Muñiz Pedrogo, David A., Jun Chen, Benjamin Hillmann, et al. "An Increased Abundance of Clostridiaceae Characterizes Arthritis in Inflammatory Bowel Disease and Rheumatoid Arthritis: A Cross-sectional Study." Inflammatory Bowel Diseases 25, no. 5 (2018): 902–13. http://dx.doi.org/10.1093/ibd/izy318.

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25

Scarpa, Marco, Alessia Grillo, Anna Pozza, et al. "TLR2 and TLR4 Up-regulation and Colonization of the Ileal Mucosa by Clostridiaceae spp. in Chronic/Relapsing Pouchitis." Journal of Surgical Research 169, no. 2 (2011): e145-e154. http://dx.doi.org/10.1016/j.jss.2011.04.003.

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26

Maiboroda, O. V., R. V. Yechkenko, O. M. Rula, B. T. Stegniy, and D. V. Muzyka. "Monitoring of bacterial diseases of poultry and wild birds in 2016–2020 in Ukraine, forecasting the epizootic situation." Veterinary Medicine: inter-departmental subject scientific collection, no. 108 (December 22, 2022): 29–35. https://doi.org/10.36016/vm-2022-108-5.

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The article presents the generalized results of bacteriological research of biological material from poultry and wild birds, compound feeds and their components for poultry feeding. Epizootological monitoring of the circulation of pathogens of bacterial diseases of poultry and bacteriological studies have been conducted during 2016–2020. A wide range of pathogens of bacterial infections has been established in poultry. Opportunistic microorganisms from the family Enterobacteriaceae isolated from poultry were dominant, they were isolated in 73.4% of cases. Infection of birds with pathogens of t

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27

Martin, Lucile. "Moduler le microbiote intestinal par l’alimentation chez le chien." Le Nouveau Praticien Vétérinaire canine & féline 21, no. 90 (2024): 20–25. https://doi.org/10.1051/npvcafe/2025015.

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Le microbiote intestinal est un écosystème dynamique dont on connaît maintenant toute l’importance pour la santé. Parmi les facteurs susceptibles d’agir sur sa composition, l’alimentation est l’un des plus important, et ce, quelle que soit l’espèce considérée. La microflore varie en fonction des grands équilibres en macronutriments, en particulier protéines et glucides, ces modifications pouvant avoir des effets positifs ou négatifs sur la santé générale. Chez le chien, une alimentation standard à base de croquettes induit un profil bactérien riche en Bacteroidetes, Prevotellaceae, Proteobacte

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28

Huang, Xinqi, Liangliang Liu, Jun Zhao, Jinbo Zhang, and Zucong Cai. "The families Ruminococcaceae, Lachnospiraceae, and Clostridiaceae are the dominant bacterial groups during reductive soil disinfestation with incorporated plant residues." Applied Soil Ecology 135 (March 2019): 65–72. http://dx.doi.org/10.1016/j.apsoil.2018.11.011.

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29

Cao, Yu, Changlong Leng, Kuan Lin, et al. "Tangeretin Mitigates Trimethylamine Oxide Induced Arterial Inflammation by Disrupting Choline–Trimethylamine Conversion through Specific Manipulation of Intestinal Microflora." Molecules 29, no. 6 (2024): 1323. http://dx.doi.org/10.3390/molecules29061323.

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Previous studies have revealed the microbial metabolism of dietary choline in the gut, leading to its conversion into trimethylamine (TMA). Polymethoxyflavones (PMFs), exemplified by tangeretin, have shown efficacy in mitigating choline-induced cardiovascular inflammation. However, the specific mechanism by which these compounds exert their effects, particularly in modulating the gut microbiota, remains uncertain. This investigation focused on tangeretin, a representative PMFs, to explore its influence on the gut microbiota and the choline–TMA conversion process. Experimental results showed th

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30

Mjaaseth, Ulrik N., Jackson Norris, Niklas DJ Aardema, Madison L. Bunnell, Korry Hintze, and Clara Cho. "Increased Vitamin Content or an Imbalance in Methyl Nutrients in the Gestational Diet Shifts the Gut Microbiota of the Offspring in a Sex-Dependent Manner." Current Developments in Nutrition 5, Supplement_2 (2021): 787. http://dx.doi.org/10.1093/cdn/nzab046_084.

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Abstract Objectives Excess gestational folic acid and insufficient choline intakes as observed in the North American populations may increase the risk of obesity in offspring. It is well-established that adverse health outcomes may arise due to shifts in the gut microbial communities, but whether high vitamin intakes or an imbalance between methyl nutrients contributes to gut microbiota alterations is unclear. The objective of this research was to determine the gut microbiota composition of male and female offspring in relation to the vitamin composition of the gestational diet. Methods Pregna

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Jeon, Julie, Xi Fang, Jeferson Lourenco, et al. "Fecal Microbiota Composition of a Mother-Infant Dyad in a Pig Model." Current Developments in Nutrition 4, Supplement_2 (2020): 1015. http://dx.doi.org/10.1093/cdn/nzaa054_087.

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Abstract Objectives Microbial programming in early life is associated with gut health and overall well-being in adulthood. The establishment of the nascent gut microbiome is substantially influenced by both maternal nutrition and the native maternal microbiome. Pig is recognized as a valuable model in gastrointestinal track research due to its remarkable similarity to humans in gastrointestinal anatomy, physiology, biochemistry, immunology, and pathology. This study examined the characteristics of the gut microflora in the sow-piglet dyad. Methods Fecal samples were collected from sows (n = 6)

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Pravosudova, Natalia A., Olga V. Marfina, and Viktor L. Melnikov. "Influence of diets on the composition of intestinal microflora and on immune processes in the human." Вестник Пермского университета. Серия «Биология»=Bulletin of Perm University. Biology, no. 2 (2024): 190–204. http://dx.doi.org/10.17072/1994-9952-2024-2-190-204.

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Diets, via the formation of a dominant microbial core, influence metabolic processes in the body, which determine changes in the individual's immune response. The work studies the influence of the main dietary regimes (vegan and vegetarian, ketogenic, gluten-free, Mediterranean diets, low FODMAP diet, Western diet) on the diversity and composition of the intestinal microflora. Vegans and vegetarians have a greater diversity of species from the Bacteroidetes group, an increase in the number of lactic acid bacteria such as Ruminococcus, E. rectale and Roseburia, and a decrease in the number of C

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Suksong, Wantanasak, Prawit Kongjan, Poonsuk Prasertsan, and Sompong O-Thong. "Thermotolerant cellulolytic Clostridiaceae and Lachnospiraceae rich consortium enhanced biogas production from oil palm empty fruit bunches by solid-state anaerobic digestion." Bioresource Technology 291 (November 2019): 121851. http://dx.doi.org/10.1016/j.biortech.2019.121851.

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34

Christopher, D. Ogg and Bharat K. C. Patel. "Caloramator australicus sp. nov., a thermophilic, anaerobic bacterium from the Great Artesian Basin of Australia." International Journal of Systematic and Evolutionary Microbiology 59 (December 31, 2009): 95–101. https://doi.org/10.1099/ijs.0.000802-0.

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Christopher D. Ogg and Bharat K. C. Patel (2009): Caloramator australicus sp. nov., a thermophilic, anaerobic bacterium from the Great Artesian Basin of Australia. International Journal of Systematic and Evolutionary Microbiology 59: 95-101, DOI: 10.1099/ijs.0.000802-0

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Wang, Yibo, Yonghong Liu, Minquan Feng, and Lina Wang. "Study of the treatment of domestic sewage using PVA gel beads as a biomass carrier." Journal of Water Reuse and Desalination 8, no. 3 (2017): 340–49. http://dx.doi.org/10.2166/wrd.2017.181.

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Abstract Technologies for domestic sewage treatment with low excess sludge yield rate and highly efficient biological treatment methods are needed, and the moving-bed biofilm reactor has great promise for meeting this need. To provide technical support for the treatment of typical domestic sewage, this paper provides an estimate of the bacterial diversity in polyvinyl alcohol (PVA) gel beads determined by a 16S-rRNA gene-based polymerase chain reaction-denaturing gradient gel electrophoresis (PCR-DGGE) approach, proposes a method for reducing the excess sludge yield rate, and describes the sta

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Horwat, Paulina, Stanisław Kopeć, Aleksandra Garczyk, et al. "Influence of Enteral Nutrition on Gut Microbiota Composition in Patients with Crohn’s Disease: A Systematic Review." Nutrients 12, no. 9 (2020): 2551. http://dx.doi.org/10.3390/nu12092551.

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The aim of the study was to systematically and comprehensively evaluate whether exclusive enteral nutrition (EEN) has impact on gut microbiota in patients with Crohn’s disease (CD). The databases PUBMED (MEDLINE), SCOPUS and WEB OF SCIENCE were searched. Out of 232 studies, 9 met inclusion criteria. The combined analyzed population consists of 118 patients with CD and treated with EEN with a time of intervention of 2–12 weeks. Studies were conducted in children, with the exception of one study. All applied feeding formulas had similar energy value and composition. The microbiome analysis was b

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Oh, Ju Kyoung, Robie Vasquez, In-Chan Hwang, et al. "Cudrania tricuspidata Combined with Lacticaseibacillus rhamnosus Modulate Gut Microbiota and Alleviate Obesity-Associated Metabolic Parameters in Obese Mice." Microorganisms 9, no. 9 (2021): 1908. http://dx.doi.org/10.3390/microorganisms9091908.

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The aim of the presented study was to investigate the synbiotic effects of L. rhamnosus 4B15 and C. tricuspidata extract administration on the gut microbiota and obesity-associated metabolic parameters in diet-induced obese mice. Thirty-one 6-week-old male C57BL/N6 mice were divided into five diet groups: normal diet (ND, n = 7) group; high-fat diet (HFD, n = 6) group; probiotic (PRO, n = 5) group; prebiotic (PRE, n = 7) group; and synbiotic (SYN, n = 6) group. After 10 weeks, the percent of fat mass, serum triglyceride, and ALT levels were significantly reduced in SYN-fed obese mice, compared

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Komanduri, Mrudhula, Karen Savage, Ana Lea, et al. "The Relationship between Gut Microbiome and Cognition in Older Australians." Nutrients 14, no. 1 (2021): 64. http://dx.doi.org/10.3390/nu14010064.

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Ageing is associated with changes in biological processes, including reductions in cognitive functions and gut microbiome diversity. However, not much is known about the relationship between cognition and the microbiome with increasing age. Therefore, we examined the relationship between the gut microbiome and cognition in 69 healthy participants aged 60–75 years. The gut microbiome was analysed with the 16S rRNA sequencing method. The cognitive assessment included the Cognitive Drug Research computerised assessment battery, which produced five cognitive factors corresponding to ‘Quality of Ep

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Trapani, Kevin M., Leigh J. Boghossian, and Elizabeth Caskey. "Clostridium subterminale Septicemia in a Patient with Metastatic Gastrointestinal Adenocarcinoma." Case Reports in Infectious Diseases 2018 (2018): 1–3. http://dx.doi.org/10.1155/2018/6031510.

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Clostridium subterminale is a rare member of the Clostridiaceae family that is rarely cultured. This report examines a case of Clostridium subterminale cultured from the blood of a 72-year-old man who was ultimately diagnosed with metastatic gastrointestinal (GI) adenocarcinoma. The patient was receiving treatment for nosocomial pneumonia prior to culture of the C. subterminale, which led to suspicion for malignancy. Extensive GI and oncologic workup demonstrated multiple comorbidities and a primary GI cancer, which likely caused a breach in the GI mucosa and C. subterminale entrance into the

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Csecsei, Peter, Bertalan Takacs, Lídia Pasitka, et al. "Distinct Gut Microbiota Profiles in Unruptured and Ruptured Intracranial Aneurysms: Focus on Butyrate-Producing Bacteria." Journal of Clinical Medicine 14, no. 10 (2025): 3488. https://doi.org/10.3390/jcm14103488.

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Background: Gut microbiome composition may influence the risk of intracranial aneurysm rupture. Methods: This study analyzed the gut microbiota of 48 patients—24 with ruptured aneurysms (RA) and 24 with unruptured intracranial aneurysms (UIA)—using next-generation sequencing. Results: While alpha diversity was similar between groups, beta diversity revealed significant taxonomic differences (Bray–Curtis: p = 0.02; unweighted UniFrac: p = 0.0291). Both groups were dominated by the phyla Bacillota, Bacteroidota, and Proteobacteria, but genus- and family-level differences were observed. RA patien

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Yu, Ting, Yu Ding, Dong Qian, Lin Lin, and Yurong Tang. "Characteristics of fecal microbiota in different constipation subtypes and association with colon physiology, lifestyle factors, and psychological status." Therapeutic Advances in Gastroenterology 16 (January 2023): 175628482311541. http://dx.doi.org/10.1177/17562848231154101.

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Background: Patients with chronic constipation (CC) show altered gut microbial composition. Objectives: To compare the fecal microbiota with different constipation subtypes and to identify potential influencing factors. Design: This is a prospective cohort study. Methods: The stool samples of 53 individuals with CC and 31 healthy individuals were analyzed using 16S rRNA sequencing. The associations between microbiota composition and colorectal physiology, lifestyle factors, and psychological distress were analyzed. Results: In all, 31 patients with CC were classified as having slow-transit con

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Lo, C. I., M. Mailhe, D. Ricaboni, et al. "Massilioclostridium coli gen. nov., sp. nov., a new member of the Clostridiaceae family isolated from the left colon of a 27-year-old woman." New Microbes and New Infections 16 (March 2017): 63–72. http://dx.doi.org/10.1016/j.nmni.2017.01.004.

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Rodriguez-Gonzalez, Claudia, Carolina Ospina-Betancourth, and Janeth Sanabria. "High Resistance of a Sludge Enriched with Nitrogen-Fixing Bacteria to Ammonium Salts and Its Potential as a Biofertilizer." Bioengineering 8, no. 5 (2021): 55. http://dx.doi.org/10.3390/bioengineering8050055.

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The increasing use of chemical fertilizers causes the loss of natural biological nitrogen fixation in soils, water eutrophication and emits more than 300 Mton CO2 per year. It also limits the success of external bacterial inoculation in the soil. Nitrogen fixing bacteria can be inhibited by the presence of ammonia as its presence can inhibit biological nitrogen fixation. Two aerobic sludges from wastewater treatment plants (WWTP) were exposed to high ammonium salts concentrations (>450 mg L−1 and >2 dS m−1). Microbial analysis after treatment through 16S pyrosequencing showed the presenc

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Trela, Jacek, Bartosz Kierończyk, Veerle Hautekiet, and Damian Józefiak. "Combination of Bacillus licheniformis and Salinomycin: Effect on the Growth Performance and GIT Microbial Populations of Broiler Chickens." Animals 10, no. 5 (2020): 889. http://dx.doi.org/10.3390/ani10050889.

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The aim of the study was to investigate the effect of Bacillus licheniformis and salinomycin supplementation in broiler diets as individual factors or in combination on the growth performance, GIT morphometry, and microbiota populations. Four hundred one-day-old Ross 308 chicks were randomly distributed to four dietary treatments (10 replicates, 10 birds each). The following treatments were applied: NC—no additives; NC + SAL—salinomycin addition (60 mg/kg diet), NC + PRO—B. licheniformis DSM 28710 preparation (1.6 × 109 CFU/kg; 500 mg/kg diet), and NC + SAL + PRO—combination of salinomycin and

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Swaminathan, Gokul, Michael Citron, Jianying Xiao, et al. "Vaccine Hyporesponse Induced by Individual Antibiotic Treatment in Mice and Non-Human Primates Is Diminished upon Recovery of the Gut Microbiome." Vaccines 9, no. 11 (2021): 1340. http://dx.doi.org/10.3390/vaccines9111340.

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Emerging evidence demonstrates a connection between microbiome composition and suboptimal response to vaccines (vaccine hyporesponse). Harnessing the interaction between microbes and the immune system could provide novel therapeutic strategies for improving vaccine response. Currently we do not fully understand the mechanisms and dynamics by which the microbiome influences vaccine response. Using both mouse and non-human primate models, we report that short-term oral treatment with a single antibiotic (vancomycin) results in the disruption of the gut microbiome and this correlates with a decre

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Khasapane, Ntelekwane G., Jane S. Nkhebenyane, Stanford Kwenda, et al. "Application of culture, PCR, and PacBio sequencing for determination of microbial composition of milk from subclinical mastitis dairy cows of smallholder farms." Open Life Sciences 16, no. 1 (2021): 800–808. http://dx.doi.org/10.1515/biol-2021-0080.

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Abstract Mastitis is a cow disease usually signalized by irritation, swelling, and soreness of the udder. It is characterized by physical, chemical, and biological changes in the udder and milk. The aim of this study was to detect and characterize pathogens causing subclinical mastitis (SCM) from the milk of dairy cows of small-scale farmers through culture and molecular techniques. Milk was collected from 32 cows belonging to 8 small-scale farmers around Harrismith District, South Africa. The results showed that screening of SCM by California mastitis test and somatic cell counts (SCC) was 21

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Golloso-Gubat, Maria Julia, Quinten R. Ducarmon, Robby Carlo A. Tan, et al. "Gut Microbiota and Dietary Intake of Normal-Weight and Overweight Filipino Children." Microorganisms 8, no. 7 (2020): 1015. http://dx.doi.org/10.3390/microorganisms8071015.

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Diet and body mass index (BMI) have been shown to affect the gut microbiota of children, but studies are largely performed in developed countries. Here, we conducted a cross-sectional investigation on the differences in the bacterial gut microbiota between normal-weight and overweight urban Filipino children, and determined the relationship between their energy, macronutrient and dietary fiber intakes, and their gut microbiota composition and diversity. Forty-three children (normal-weight, n = 32; overweight, n = 11) participated in the study. Energy and fiber intakes were collected using a se

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Bang, Donggyu, Woojin Chung, and Soonwoong Chang. "Influence of Effective Microbial Additives Inoculation on Indigenous Bacterial Community Dynamics and Co-Occurrence Patterns During the Composting of Mixed Food Waste and Livestock Manure." Agronomy 14, no. 12 (2024): 2973. https://doi.org/10.3390/agronomy14122973.

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Sustainable management of organic waste, such as food waste (FW) and livestock manure (LS), is essential for reducing pollution and promoting resource recycling. This study investigated the effects of Bacillus sp. inoculation and biochar addition on composting efficiency, microbial dynamics, and physicochemical properties. Bacillus sp. accelerated the breakdown of cellulose and lignin, reduced moisture content, stabilized pH, and mitigated ammonia volatilization. Biochar reduced ammonia emissions by 17.04%, increasing to 28.89% with Bacillus sp. Next-generation sequencing revealed Bacillus sp.

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RUIZ, R., A. BARROSO-DELJESÚS, L. LARA, and L. A. RUBIO. "The use of multiple restriction enzymes in terminal restriction fragment length polymorphism analysis and identification of performance-related caecal bacterial groups in growing broiler chickens." Journal of Agricultural Science 153, no. 8 (2015): 1491–505. http://dx.doi.org/10.1017/s0021859615000611.

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SUMMARYFour restriction enzymes (AluI, HhaI, MspI and RsaI), either individually or in combination, were used in terminal restriction fragment length polymorphism (T-RFLP) analysis to: (i) characterize the chicken intestinal bacterial community; and (ii) tentatively identify intestinal bacterial groups related with increased performance parameters in broiler chickens. Balanced commercial diets free of any feed antibiotics were offered to broilers assigned randomly to one of the five dietary treatments: control (C) (commercial diet with no additive), inulin (I), fructose caramel, propyl propane

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Frias, Jorge, Anna Garriga, Ángel Peñalver, et al. "Exploring Gut Microbiome Variations between Popillia japonica Populations of Azores." Microorganisms 11, no. 8 (2023): 1972. http://dx.doi.org/10.3390/microorganisms11081972.

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Popillia japonica (Coleoptera: Scarabaeidae), is an emerging invasive pest in Europe and America. In the Azores, this pest was first found on Terceira Island during the sixties and soon spread to other islands. The rate of infestation differs between islands, and we hypothesized that microbiome composition could play a role. Therefore, we sampled 3rd instar larvae and soil from sites with high and low infestation rates to analyze the microbiome using next-generation sequencing. We analyzed twenty-four 16S DNA libraries, which resulted in 3278 operational taxonomic units. The alpha and beta div

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