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Journal articles on the topic 'Combined workflow'

Author: Grafiati

Published: 28 May 2022

Last updated: 31 July 2025

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1

BLIN, MARIE JOSÉ, JACQUES WAINER, and CLAUDIA BAUZER MEDEIROS. "A REUSE-ORIENTED WORKFLOW DEFINITION LANGUAGE." International Journal of Cooperative Information Systems 12, no. 01 (2003): 1–36. http://dx.doi.org/10.1142/s0218843003000553.

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This paper presents a new formalism for workflow process definition, which combines research in programming languages and in database systems. This formalism is based on creating a library of workflow building blocks, which can be progressively combined and nested to construct complex workflows. Workflows are specified declaratively, using a simple high level language, which allows the dynamic definition of exception handling and events, as well as dynamically overriding workflow definition. This ensures a high degree of flexibility in data and control flow specification, as well as in reuse o

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2

Lamprecht, Anna-Lena, Magnus Palmblad, Jon Ison, et al. "Perspectives on automated composition of workflows in the life sciences." F1000Research 10 (September 7, 2021): 897. http://dx.doi.org/10.12688/f1000research.54159.1.

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Scientific data analyses often combine several computational tools in automated pipelines, or workflows. Thousands of such workflows have been used in the life sciences, though their composition has remained a cumbersome manual process due to a lack of standards for annotation, assembly, and implementation. Recent technological advances have returned the long-standing vision of automated workflow composition into focus. This article summarizes a recent Lorentz Center workshop dedicated to automated composition of workflows in the life sciences. We survey previous initiatives to automate the co

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Arshad, Junaid, Alexander Hoffmann, Sandra Gesing, et al. "Multi-level meta-workflows: new concept for regularly occurring tasks in quantum chemistry." Journal of Cheminformatics 8, no. 1 (2016): 58. https://doi.org/10.1186/s13321-016-0169-8.

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<strong>Background: </strong> In Quantum Chemistry, many tasks are reoccurring frequently, e.g. geometry optimizations, benchmarking series etc. Here, workflows can help to reduce the time of manual job definition and output extraction. These workflows are executed on computing infrastructures and may require large computing and data resources. Scientific workflows hide these infrastructures and the resources needed to run them. It requires significant efforts and specific expertise to design, implement and test these workflows.<strong>Significance: </strong>Many of these workflows are complex

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Suprunenko, Oksana Aleksandrovna. "COMBINED TOOLS SIMULATION WORKFLOW BASED GRAPH MODELS." Theoretical & Applied Science 23, no. 03 (2015): 153–58. http://dx.doi.org/10.15863/tas.2015.03.23.26.

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Røst, Lisa M., Lilja Brekke Thorfinnsdottir, Kanhaiya Kumar, et al. "Absolute Quantification of the Central Carbon Metabolome in Eight Commonly Applied Prokaryotic and Eukaryotic Model Systems." Metabolites 10, no. 2 (2020): 74. http://dx.doi.org/10.3390/metabo10020074.

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Absolute quantification of intracellular metabolite pools is a prerequisite for modeling and in-depth biological interpretation of metabolomics data. It is the final step of an elaborate metabolomics workflow, with challenges associated with all steps—from sampling to quantifying the physicochemically diverse metabolite pool. Chromatographic separation combined with mass spectrometric (MS) detection is the superior platform for high coverage, selective, and sensitive detection of metabolites. Herein, we apply our quantitative MS-metabolomics workflow to measure and present the central carbon m

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Dharwadkar, Nagaraj V., Shivananda R. Poojara, and Priyanka M. Kadam. "Fault Tolerant and Optimal Task Clustering for Scientific Workflow in Cloud." International Journal of Cloud Applications and Computing 8, no. 3 (2018): 1–19. http://dx.doi.org/10.4018/ijcac.2018070101.

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Scientific workflows are very complex, large-scale applications and require more computational power for data transmission and execution. In this article, the authors address the problem of scheduling scientific workflow on a number of virtual machines (VM) with the objective of reducing the total makespan of workflow and failure. This article implements checkpoints and replication strategies with the parallel task execution (PTE) algorithm to schedule scientific workflow for minimum time and cost. In order to reduce execution overhead and improve performance of the scientific application, the

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Corsalini, Massimo, Giuseppe Barile, Francesco Ranieri, et al. "Comparison between Conventional and Digital Workflow in Implant Prosthetic Rehabilitation: A Randomized Controlled Trial." Journal of Functional Biomaterials 15, no. 6 (2024): 149. http://dx.doi.org/10.3390/jfb15060149.

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The progress of digital technologies in dental prosthodontics is fast and increasingly accurate, allowing practitioners to simplify their daily work. These technologies aim to substitute conventional techniques progressively, but their real efficiency and predictability are still under debate. Many systematic reviews emphasize the lack of clinical RCTs that compare digital and traditional workflow. To address this evidence, we conducted a three-arm designed clinical RCT, which compares fully digital, combined digital, and analogic and fully analog workflows. We aimed to compare the clinical pr

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Jean Edgard Gnimassoun, Et al. "Comparison of the Execution Step Strategies on Scheduling Data-intensive Workflows on IaaS Cloud Platforms." International Journal on Recent and Innovation Trends in Computing and Communication 11, no. 9 (2023): 3556–63. http://dx.doi.org/10.17762/ijritcc.v11i9.9576.

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The IaaS platforms of the Cloud hold promise for executing parallel applications, particularly data-intensive scientific workflows. An important challenge for users of these platforms executing scientific workflows is to strike the right trade-off between the execution time of the scientific workflow and the cost of using the platform. In a previous article, we proposed an efficient approach that assists the user in finding this compromise. This approach requires an algorithm aimed at minimizing the execution time of the workflow once the platform configuration is set. In this article, we comp

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Elnagar, Mohammed H., Sharon Aronovich, and Budi Kusnoto. "Digital Workflow for Combined Orthodontics and Orthognathic Surgery." Oral and Maxillofacial Surgery Clinics of North America 32, no. 1 (2020): 1–14. http://dx.doi.org/10.1016/j.coms.2019.08.004.

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10

Dai, Peng, '. Mausam, and Daniel Weld. "Decision-Theoretic Control of Crowd-Sourced Workflows." Proceedings of the AAAI Conference on Artificial Intelligence 24, no. 1 (2010): 1168–74. http://dx.doi.org/10.1609/aaai.v24i1.7760.

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Crowd-sourcing is a recent framework in which human intelligence tasks are outsourced to a crowd of unknown people ("workers") as an open call (e.g., on Amazon's Mechanical Turk). Crowd-sourcing has become immensely popular with hoards of employers ("requesters"), who use it to solve a wide variety of jobs, such as dictation transcription, content screening, etc. In order to achieve quality results, requesters often subdivide a large task into a chain of bite-sized subtasks that are combined into a complex, iterative workflow in which workers check and improve each other's results. This paper

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Seebens, Hanno, David A. Clarke, Quentin Groom, et al. "A workflow for standardising and integrating alien species distribution data." NeoBiota 59 (July 28, 2020): 39–59. http://dx.doi.org/10.3897/neobiota.59.53578.

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Biodiversity data are being collected at unprecedented rates. Such data often have significant value for purposes beyond the initial reason for which they were collected, particularly when they are combined and collated with other data sources. In the field of invasion ecology, however, integrating data represents a major challenge due to the notorious lack of standardisation of terminologies and categorisations, and the application of deviating concepts of biological invasions. Here, we introduce the SInAS workflow, short for Standardising and Integrating Alien Species data. The SInAS workflo

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Seebens, Hanno, David A. Clarke, Quentin Groom, et al. "A workflow for standardising and integrating alien species distribution data." NeoBiota 59 (July 28, 2020): 39–59. https://doi.org/10.3897/neobiota.59.53578.

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Biodiversity data are being collected at unprecedented rates. Such data often have significant value for purposes beyond the initial reason for which they were collected, particularly when they are combined and collated with other data sources. In the field of invasion ecology, however, integrating data represents a major challenge due to the notorious lack of standardisation of terminologies and categorisations, and the application of deviating concepts of biological invasions. Here, we introduce the SInAS workflow, short for Standardising and Integrating Alien Species data. The SInAS workflo

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Manuja, Bandal, and Dhavale Kunal. "Enhancing JIRA Capabilities for Increased Productivity: A Hybrid Approach Using JIRA Automation and Custom Scripting." European Journal of Advances in Engineering and Technology 10, no. 6 (2023): 79–86. https://doi.org/10.5281/zenodo.15044426.

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JIRA is a widely adopted project management tool in software development, offering robust features for workflow automation and issue tracking. While JIRA offers extensive workflow automation and integration capabilities, many organizations face productivity bottlenecks due to rigid workflows, manual repetitive tasks, and inefficient reporting mechanisms. This paper proposes a hybrid approach that leverages JIRA Automation Rules combined with custom scripting (using Groovy, Python, and REST APIs) to enhance JIRA's capabilities beyond its native functionality. By integrating AI-powered predictiv

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Woolland, Oliver, Paul Brack, Stian Soiland-Reyes, Ben Scott, and Laurence Livermore. "Incrementally building FAIR Digital Objects with Specimen Data Refinery workflows." Research Ideas and Outcomes 8 (October 12, 2022): e94349. https://doi.org/10.3897/rio.8.e94349.

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<em>Specimen Data Refinery</em> (SDR) is a developing platform for automating transcription of specimens from natural history collections (Hardisty et al. 2022). SDR is based on computational workflows and digital twins using FAIR Digital Objects.We show our recent experiences with building SDR using the Galaxy workflow system and combining two FDO methodologies with open digital specimens (openDS) and RO-Crate data packaging. We suggest FDO improvements for incremental building of digital objects in computational workflows.SDR workflowsSDR is realised as the workflow system Galaxy (Afgan et a

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Brinkløv, Signe M. M., Jamie Macaulay, Christian Bergler, et al. "Open‐source workflow approaches to passive acoustic monitoring of bats." Methods in Ecology and Evolution 14, no. 7 (2023): 1747–63. https://doi.org/10.5281/zenodo.13481427.

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(Uploaded by Plazi for the Bat Literature Project) Abstract The affordability, storage and power capacity of compact modern recording hardware have evolved passive acoustic monitoring (PAM) of animals and soundscapes into a non‐invasive, cost‐effective tool for research and ecological management particularly useful for bats and toothed whales that orient and forage using ultrasonic echolocation. The use of PAM at large scales hinges on effective automated detectors and species classifiers which, combined with distance sampling approaches, have enabled species abundance estimation of toothed wh

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Brinkløv, Signe M. M., Jamie Macaulay, Christian Bergler, et al. "Open‐source workflow approaches to passive acoustic monitoring of bats." Methods in Ecology and Evolution 14, no. 7 (2023): 1747–63. https://doi.org/10.5281/zenodo.13481427.

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(Uploaded by Plazi for the Bat Literature Project) Abstract The affordability, storage and power capacity of compact modern recording hardware have evolved passive acoustic monitoring (PAM) of animals and soundscapes into a non‐invasive, cost‐effective tool for research and ecological management particularly useful for bats and toothed whales that orient and forage using ultrasonic echolocation. The use of PAM at large scales hinges on effective automated detectors and species classifiers which, combined with distance sampling approaches, have enabled species abundance estimation of toothed wh

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Brinkløv, Signe M. M., Jamie Macaulay, Christian Bergler, et al. "Open‐source workflow approaches to passive acoustic monitoring of bats." Methods in Ecology and Evolution 14, no. 7 (2023): 1747–63. https://doi.org/10.5281/zenodo.13481427.

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(Uploaded by Plazi for the Bat Literature Project) Abstract The affordability, storage and power capacity of compact modern recording hardware have evolved passive acoustic monitoring (PAM) of animals and soundscapes into a non‐invasive, cost‐effective tool for research and ecological management particularly useful for bats and toothed whales that orient and forage using ultrasonic echolocation. The use of PAM at large scales hinges on effective automated detectors and species classifiers which, combined with distance sampling approaches, have enabled species abundance estimation of toothed wh

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Brinkløv, Signe M. M., Jamie Macaulay, Christian Bergler, et al. "Open‐source workflow approaches to passive acoustic monitoring of bats." Methods in Ecology and Evolution 14, no. 7 (2023): 1747–63. https://doi.org/10.5281/zenodo.13481427.

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(Uploaded by Plazi for the Bat Literature Project) Abstract The affordability, storage and power capacity of compact modern recording hardware have evolved passive acoustic monitoring (PAM) of animals and soundscapes into a non‐invasive, cost‐effective tool for research and ecological management particularly useful for bats and toothed whales that orient and forage using ultrasonic echolocation. The use of PAM at large scales hinges on effective automated detectors and species classifiers which, combined with distance sampling approaches, have enabled species abundance estimation of toothed wh

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Brinkløv, Signe M. M., Jamie Macaulay, Christian Bergler, et al. "Open‐source workflow approaches to passive acoustic monitoring of bats." Methods in Ecology and Evolution 14, no. 7 (2023): 1747–63. https://doi.org/10.5281/zenodo.13481427.

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(Uploaded by Plazi for the Bat Literature Project) Abstract The affordability, storage and power capacity of compact modern recording hardware have evolved passive acoustic monitoring (PAM) of animals and soundscapes into a non‐invasive, cost‐effective tool for research and ecological management particularly useful for bats and toothed whales that orient and forage using ultrasonic echolocation. The use of PAM at large scales hinges on effective automated detectors and species classifiers which, combined with distance sampling approaches, have enabled species abundance estimation of toothed wh

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20

Yuen, Denis, Louise Cabansay, Andrew Duncan, et al. "The Dockstore: enhancing a community platform for sharing reproducible and accessible computational protocols." Nucleic Acids Research 49, W1 (2021): W624—W632. http://dx.doi.org/10.1093/nar/gkab346.

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Abstract Dockstore (https://dockstore.org/) is an open source platform for publishing, sharing, and finding bioinformatics tools and workflows. The platform has facilitated large-scale biomedical research collaborations by using cloud technologies to increase the Findability, Accessibility, Interoperability and Reusability (FAIR) of computational resources, thereby promoting the reproducibility of complex bioinformatics analyses. Dockstore supports a variety of source repositories, analysis frameworks, and language technologies to provide a seamless publishing platform for authors to create a

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21

Janicki, Maciej, Eetu Mäkelä, Anu Koivunen, et al. "A Workflow for Integrating Close Reading and Automated Text Annotation." Digital Humanities in the Nordic and Baltic Countries Publications 3, no. 2 (2021): 230–35. http://dx.doi.org/10.5617/dhnbpub.11251.

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We present a workflow for Digital Humanities projects allowing to combine close and distant reading, as well as automated text annotation, in an iterative process. We rely on mature tools and technologies, like R, WebAnno or Prolog, that are combined in a highly automated pipeline. Such architecture can deal well with underspecified and frequently changing requirements and allow a continuous exchange of information between the computational and domain experts in all stages of the project. The workflow description is illustrated on a concrete example concerning news media analysis.

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Caballero Alfonso, Ana Yisel, Chayawan Chayawan, Domenico Gadaleta, Alessandra Roncaglioni, and Emilio Benfenati. "A KNIME Workflow to Assist the Analogue Identification for Read-Across, Applied to Aromatase Activity." Molecules 28, no. 4 (2023): 1832. http://dx.doi.org/10.3390/molecules28041832.

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The reduction and replacement of in vivo tests have become crucial in terms of resources and animal benefits. The read-across approach reduces the number of substances to be tested, exploiting existing experimental data to predict the properties of untested substances. Currently, several tools have been developed to perform read-across, but other approaches, such as computational workflows, can offer a more flexible and less prescriptive approach. In this paper, we are introducing a workflow to support analogue identification for read-across. The implementation of the workflow was performed us

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Wahba, Ashraf, Tony Ho, Sarah Johns, et al. "Abstract 2291: Bravo automation of Agilent Avida targeted enrichment for high-throughput detection of genomic alteration and DNA methylation." Cancer Research 84, no. 6_Supplement (2024): 2291. http://dx.doi.org/10.1158/1538-7445.am2024-2291.

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Abstract Background: Current genomic and epigenomic profiling of cancer tissue DNA or cfDNA (cell-free DNA) in liquid biopsy relies upon separate, time- and sample-consuming technologies for somatic variant detection or methylation analysis. Here we describe workflow and performance of the Agilent Bravo automated liquid handling platform with the Agilent Avida targeted enrichment solution for next generation sequencing of somatic variants and methylation profiling. This solution can effectively analyze low-input tumor DNA or cfDNA samples. The Avida Duo workflow enables highly sensitive detect

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Dupuy, Bastien, Anouar Romdhane, Peder Eliasson, and Hong Yan. "Combined geophysical and rock physics workflow for quantitative CO2 monitoring." International Journal of Greenhouse Gas Control 106 (March 2021): 103217. http://dx.doi.org/10.1016/j.ijggc.2020.103217.

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Turiák, Lilla, Chun Shao, Le Meng, et al. "Workflow for Combined Proteomics and Glycomics Profiling from Histological Tissues." Analytical Chemistry 86, no. 19 (2014): 9670–78. http://dx.doi.org/10.1021/ac5022216.

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Sunguroğlu Hensel, Defne, Jakub Tyc, and Michael Hensel. "Data-driven design for Architecture and Environment Integration." SPOOL 9, no. 1 (2022): 19–34. http://dx.doi.org/10.47982/spool.2022.1.02.

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Rapid urbanization and related land cover and land use changes are primary causes of climate change, and of environmental and ecosystem degradation. Sustainability problems are becoming increasingly complex due to these developments. At the same time vast amounts of data on urbanization, construction and resulting environmental conditions are being generated. Yet it is hardly possible to gain insights for sustainable plan-ning and design at the same rate as data is generated. Moreover, the complexity of compound sustainability problems requires interdisciplinary approaches that address multipl

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Fontan, Cauê, Gustavo Mendonça, Paulo Borella, Renata Cimões, Catherine Ramundo, and Rafael Siqueira. "Optimizing full arch rehabilitation with a digital workflow: case report." Journal of Orofacial Innovation and Science 1, no. 1 (2024): 19–29. https://doi.org/10.63281/jois.v1i1.3.

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Infull arch rehabilitations,a detailed diagnosis is essential for guiding the selection of the most appropriate therapeutic approach. The complexity of these treatments requires meticulous and individualized planning. The aim of this report is to describea clinical case ofa patient with compromised dentition who was rehabilitated witha full-arch restoration usinga digital workflow.A 46-year-old male patient was referred for correction ofa partially edentulous maxillary arch. During the clinical examination, it was observed that the remaining dentition could not be utilized in the rehabilitatio

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Amrani, Moussa, Dominique Blouin, Robert Heinrich, Arend Rensink, Hans Vangheluwe, and Andreas Wortmann. "Multi-paradigm modelling for cyber–physical systems: a descriptive framework." Software and Systems Modeling 20, no. 3 (2021): 611–39. http://dx.doi.org/10.1007/s10270-021-00876-z.

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AbstractThe complexity of cyber–physical systems (CPSs) is commonly addressed through complex workflows, involving models in a plethora of different formalisms, each with their own methods, techniques, and tools. Some workflow patterns, combined with particular types of formalisms and operations on models in these formalisms, are used successfully in engineering practice. To identify and reuse them, we refer to these combinations of workflow and formalism patterns as modelling paradigms. This paper proposes a unifying (Descriptive) Framework to describe these paradigms, as well as their combin

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Farag, S., C. Mas, P. D. D. Maizeret, B. Li, and Le Van Hung. "An Integrated Workflow for Granitic-Basement-Reservoir Evaluation." SPE Reservoir Evaluation & Engineering 13, no. 06 (2010): 893–905. http://dx.doi.org/10.2118/123455-pa.

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Summary In recent years, energy companies in the Asia Pacific region have focused increasing attention on granitic basement reservoirs, following several new oil and gas discoveries in these complex reservoirs. However, accurate formation evaluation in fractured, crystalline, granitic reservoirs is notoriously difficult. Furthermore, relatively little research has been conducted to understand loggingtool response or pressure-transient behavior, or to develop suitable workflows for formation evaluation in these types of reservoirs. In this paper, we propose a method for integrating various open

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Mura, F., S. Dinarelli, C. Mancini, et al. "Influence of the conductive coating on combined CPEM and Raman analysis." Journal of Physics: Conference Series 2579, no. 1 (2023): 012012. http://dx.doi.org/10.1088/1742-6596/2579/1/012012.

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Abstract The sample preparation is one of the fundamental steps to obtain a successful correlative microscopy experiment, and for non-conductive materials the deposition of a thin metal coating is often mandatory for a good SEM observation. Nevertheless, in case of correlative experiment, where AFM and Raman spectroscopy are involved in the workflow, this deposition will have a direct influence on both the analysis. In this paper, an investigation about the most common conductive materials used in SEM sample preparation, such as chromium, graphite and gold, and their behaviour in the construct

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Bird, Clara N., Allison H. Dawn, Julian Dale, and David W. Johnston. "A Semi-Automated Method for Estimating Adélie Penguin Colony Abundance from a Fusion of Multispectral and Thermal Imagery Collected with Unoccupied Aircraft Systems." Remote Sensing 12, no. 22 (2020): 3692. http://dx.doi.org/10.3390/rs12223692.

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Monitoring Adélie penguin (Pygoscelis adeliae) populations on the Western Antarctic Peninsula (WAP) provides information about the health of the species and the WAP marine ecosystem itself. In January 2017, surveys of Adélie penguin colonies at Avian Island and Torgersen Island off the WAP were conducted via unoccupied aircraft systems (UAS) collecting optical Red Green Blue (RGB), thermal, and multispectral imagery. A semi-automated workflow to count individual penguins using a fusion of multispectral and thermal imagery was developed and combined into an ArcGIS workflow. This workflow isolat

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Chabot, Dominique, Christopher Dillon, Adam Shemrock, Nicholas Weissflog, and Eric Sager. "An Object-Based Image Analysis Workflow for Monitoring Shallow-Water Aquatic Vegetation in Multispectral Drone Imagery." ISPRS International Journal of Geo-Information 7, no. 8 (2018): 294. http://dx.doi.org/10.3390/ijgi7080294.

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High-resolution drone aerial surveys combined with object-based image analysis are transforming our capacity to monitor and manage aquatic vegetation in an era of invasive species. To better exploit the potential of these technologies, there is a need to develop more efficient and accessible analysis workflows and focus more efforts on the distinct challenge of mapping submerged vegetation. We present a straightforward workflow developed to monitor emergent and submerged invasive water soldier (Stratiotes aloides) in shallow waters of the Trent-Severn Waterway in Ontario, Canada. The main elem

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Çin, Vahap, Ayça Deniz İzgi, Ediz Kale, and Burak Yilmaz. "Marginal and Internal Fit of Monolithic Zirconia Crowns Fabricated by Using Two Different CAD-CAM Workflows: An In Vitro Study." Prosthesis 5, no. 1 (2023): 35–47. http://dx.doi.org/10.3390/prosthesis5010003.

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Objectives: Few studies have evaluated the marginal fit of computer-aided design—computer-aided manufacturing (CAD-CAM) monolithic zirconia crowns fabricated through completely digital workflow; however, the internal fit of these restorations is not well known. The purpose of this in vitro study was to evaluate the marginal and internal fit of monolithic zirconia crowns fabricated by using digital workflow, including intraoral scanner (IOS) scans, and compare the results to those of a semi-digital workflow, which combined conventional impressions, poured casts, and extraoral scanner (EOS) scan

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Chrz�stowski-Wachtel, Piotr, Paweł Findeisen, and Grzegorz Wolny. "Time Distribution in Structural Workflow Nets." Fundamenta Informaticae 85, no. 1-4 (2008): 67–87. https://doi.org/10.3233/fun-2008-851-406.

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Workflows with transition execution times having exponential distributions are considered. The aim is to determine the overall execution time without looking into the reachability space and its analysis using Markov processes. We concentrate on the so called structural workflows, which are represented with Petri nets constructed by means of specific refinement rules. With each refinement rule (sequence, choice, parallelization, loop) we associate formulas which allow to compute the overall execution time distribution. The class of exponential distributions is too narrow to keep the result with

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Reijers, H. A., J. H. M. Rigter, and W. M. P. van der Aalst. "The Case Handling Case." International Journal of Cooperative Information Systems 12, no. 03 (2003): 365–91. http://dx.doi.org/10.1142/s0218843003000784.

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On the Dutch workflow market, a new and interesting paradigm named "case handling" is emerging. The goal of case handling is to overcome the limitations of existing workflow management systems. By using a data-driven approach combined with implicit routing and carefully avoiding context tunneling, awareness and flexibility are improved. Currently, many organizations are considering case handling systems such as FLOWer (Pallas Athena) rather than the more traditional workflow management systems. This paper provides a critical assessment of this development. The goal is to show the pro's and con

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Zai, A. H., R. W. Grant, G. Estey, et al. "Lessons from Implementing a Combined Workflow-Informatics System for Diabetes Management." Journal of the American Medical Informatics Association 15, no. 4 (2008): 524–33. http://dx.doi.org/10.1197/jamia.m2598.

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Fuchs, Marcus, Jens Teichmann, Moritz Lauster, Peter Remmen, Rita Streblow, and Dirk Müller. "Workflow automation for combined modeling of buildings and district energy systems." Energy 117 (December 2016): 478–84. http://dx.doi.org/10.1016/j.energy.2016.04.023.

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Quanico, J., J. Franck, J. P. Gimeno, et al. "Parafilm-assisted microdissection: a sampling method for mass spectrometry-based identification of differentially expressed prostate cancer protein biomarkers." Chemical Communications 51, no. 22 (2015): 4564–67. http://dx.doi.org/10.1039/c4cc08331h.

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Alva, Pradeep, Patrick Janssen, and Rudi Stouffs. "Geospatial tool-chains: Planning support systems for organisational teams." International Journal of Architectural Computing 17, no. 4 (2019): 336–56. http://dx.doi.org/10.1177/1478077119891569.

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In practice, most planners do not make significant use of planning support systems. Although extensive research has been conducted, the focus tends to be on supporting individual tasks, and the outcomes are often the development of new stand-alone tools that are difficult to integrate into existing workflows. The knowledge contribution in this article focuses on developing a novel spatial decision support framework focusing on the workflows and tool-chains that span across different teams with varying skill sets and objectives, within an organisation. In the proposed framework, the core decisi

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Ruvolo, Michael, Yingmin Wang, Grace Zhao, et al. "Abstract 4070: Demonstrating analytical performance of Agilent Avida Duo utilizing novel multiomic reference standards." Cancer Research 85, no. 8_Supplement_1 (2025): 4070. https://doi.org/10.1158/1538-7445.am2025-4070.

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Abstract Measuring both genetic and epigenetic status by target enrichment NGS workflows is critical for high-sensitivity oncology applications using cell-free samples (cfDNA). Conventional workflows accomplish this by splitting a sample into multiple tests, potentially limiting sensitivity. The Agilent Avida target enrichment technology enables high-efficiency enrichment of native DNA fragments, preserving epigenetic markers such as methylation. This method, termed Avida Duo, measures both mutation and methylation status, maximizing the information that can be obtained from any single cfDNA s

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Anbarkhan, Samar Hussni, and Mohamed Ali Rakrouki. "An Enhanced PSO Algorithm for Scheduling Workflow Tasks in Cloud Computing." Electronics 12, no. 12 (2023): 2580. http://dx.doi.org/10.3390/electronics12122580.

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This paper proposes an enhanced Particle Swarm Optimization (PSO) algorithm in order to deal with the issue that the time and cost of the PSO algorithm is quite high when scheduling workflow tasks in a cloud computing environment. To reduce particle dimensions and ensure initial particle quality, intensive tasks are combined when scheduling workflow tasks. Next, the particle initialization is optimized to ensure better initial particle quality and reduced search space. Then, a suitable self-adaptive function is integrated to determine the best direction of the particles. The experiments show t

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Papiez, Anna, Christophe Badie, and Joanna Polanska. "Machine learning techniques combined with dose profiles indicate radiation response biomarkers." International Journal of Applied Mathematics and Computer Science 29, no. 1 (2019): 169–78. http://dx.doi.org/10.2478/amcs-2019-0013.

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Abstract The focus of this research is to combine statistical and machine learning tools in application to a high-throughput biological data set on ionizing radiation response. The analyzed data consist of two gene expression sets obtained in studies of radiosensitive and radioresistant breast cancer patients undergoing radiotherapy. The data sets were similar in principle; however, the treatment dose differed. It is shown that introducing mathematical adjustments in data preprocessing, differentiation and trend testing, and classification, coupled with current biological knowledge, allows eff

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Cadang, Lance, Chi Yan Janet Tam, Benjamin Nathan Moore, Juergen Fichtl, and Feng Yang. "A Highly Efficient Workflow for Detecting and Identifying Sequence Variants in Therapeutic Proteins with a High Resolution LC-MS/MS Method." Molecules 28, no. 8 (2023): 3392. http://dx.doi.org/10.3390/molecules28083392.

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Large molecule protein therapeutics have steadily grown and now represent a significant portion of the overall pharmaceutical market. These complex therapies are commonly manufactured using cell culture technology. Sequence variants (SVs) are undesired minor variants that may arise from the cell culture biomanufacturing process that can potentially affect the safety and efficacy of a protein therapeutic. SVs have unintended amino acid substitutions and can come from genetic mutations or translation errors. These SVs can either be detected using genetic screening methods or by mass spectrometry

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O'Leary, Ronan B., and Anne L. Gunderman. "A combined digital-conventional workflow to fabricate a removable partial denture for a patient with a severe gag reflex." Dental Update 47, no. 9 (2020): 719–27. http://dx.doi.org/10.12968/denu.2020.47.9.719.

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Introducing a novel approach to overcoming a profound gag reflex and aversion to conventional dental impression procedures when fabricating a removable partial denture. The digital workflow is becoming increasingly popular in the discipline of fixed prosthodontics. Chairside digitization of a patient's dentition is a less invasive and more comfortable procedure in comparison to conventional dental impression techniques. The advantages can be most relevant to patients with a profound gag-reflex. Currently, certain challenges exist with full digitization in the discipline of removable prosthodon

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Jiang, Wei, Gang Zhu, and Ying Zheng. "Iterative Learning Control for AGV Drive Motor Based on Linear Extended State Observer." Machines 9, no. 12 (2021): 324. http://dx.doi.org/10.3390/machines9120324.

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In order to solve the problems of repetitive and non-repetitive interference in the workflow of Automated Guided Vehicle (AGV), Iterative Learning Control (ILC) combined with linear extended state observer (LESO) is utilized to improve the control accuracy of AGV drive motor. Considering the working conditions of AGV, the load characteristics of the drive motor are analyzed with which the mathematical model of motor system is established. Then the third-order extended state space equations of the system approximate model is obtained, in which LESO is designed to estimate the system states and

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Villanueva-Cañas, José Luis, Eva Gonzalez-Roca, Aitor Gastaminza Unanue, et al. "Implementation of an open-source robotic platform for SARS-CoV-2 testing by real-time RT-PCR." PLOS ONE 16, no. 7 (2021): e0252509. http://dx.doi.org/10.1371/journal.pone.0252509.

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The current global pandemic due to the SARS-CoV-2 has pushed the limits of global health systems across all aspects of clinical care, including laboratory diagnostics. Supply chain disruptions and rapidly-shifting markets have resulted in flash-scarcity of commercial laboratory reagents; this has motivated health care providers to search for alternative workflows to cope with the international increase in demand for SARS-CoV-2 testing. The aim of this study is to present a reproducible workflow for real time RT-PCR SARS-CoV-2 testing using OT-2 open-source liquid-handling robots (Opentrons, NY

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Mocarelli, Paolo, Gary L. Horowitz, Pier Mario Gerthoux, et al. "Increasing Efficiency and Quality by Consolidation of Clinical Chemistry and Immunochemistry Systems with MODULARANALYTICSSWA." Journal of Automated Methods and Management in Chemistry 2008 (2008): 1–14. http://dx.doi.org/10.1155/2008/498921.

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MODULARANALYTICSSerum Work Area (in USA Integrated MODULARANALYTICS, MODULARANALYTICSis a trademark of a member of the Roche Group) represents a further approach to automation in the laboratory medicine. This instrument combines previously introduced modular systems for the clinical chemistry and immunochemistry laboratory and allows customised combinations for various laboratory workloads. Functionality, practicability, and workflow behaviour of MODULARANALYTICSSerum Work Area were evaluated in an international multicenter study at six laboratories. Across all experiments, 236000 results from

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Venkateswara Rao Banda. "Agentforce: Next-Generation Enterprise Support Platform Powered by Salesforce." International Journal of Scientific Research in Computer Science, Engineering and Information Technology 11, no. 2 (2025): 3491–503. https://doi.org/10.32628/cseit25112716.

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Agentforce represents a transformative enterprise support solution built on Salesforce Service Cloud, demonstrating how systematic implementation of AI-driven automation, structured workflow management, and intelligent collaboration tools revolutionizes service operations. The platform's comprehensive technical framework encompasses sophisticated Einstein AI capabilities, automated workflow management, intelligent knowledge discovery, and collaborative problem-solving tools, enabling organizations to achieve substantial improvements in operational efficiency through proper configuration and im

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Makarov, V. V., V. I. Kuznetsov, and I. O. Kuznetsova. "Criteria base of the Hartmann–Sprenger pipe workflow." Omsk Scientific Bulletin. Series Aviation-Rocket and Power Engineering 8, no. 2 (2024): 61–67. http://dx.doi.org/10.25206/2588-0373-2024-8-2-61-67.

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The issue of creating a criteria base for the Hartmann–Sprenger pipe workflow based on a closed mathematical model is considered. On the basis of a closed mathematical model, the main parameters affecting the increase in the total temperature of the gas at the end of the dead-end cavity above the deceleration temperature of the incoming flow are recorded. Parameters with the same dimension are combined into one group so that only one dimensionless complex is obtained for all these quantities. Finding dimensionless complexes based on the modeling theory allowed us to determine the criteria base

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Qiu, Hao Bo, Y. Wang, Ping Jiang, and Liang Gao. "Research on Workflow Modeling Methods for Collaborative Product Development." Advanced Materials Research 44-46 (June 2008): 247–52. http://dx.doi.org/10.4028/www.scientific.net/amr.44-46.247.

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Collaborative Product Development (CPD) is an advanced paradigm for product development, which focuses on facilitating the business collaboration across organizational boundaries. The process of CPD is highly dynamic, and needs to be implemented jointly by participant organizations. Firstly, this paper analyzes some traditional workflow modeling methods, and reviews related research work on workflow modeling for CPD. Secondly, a process-view and Petri nets combined approach is highlighted. At last, a novel process management framework is proposed, which provides an effective and universal way

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