Academic literature on the topic 'Comparative genomics'

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Journal articles on the topic "Comparative genomics"

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Furlong, Rebecca F., and Ziheng Yang. "Comparative genomics: Comparative genomics coming of age." Heredity 91, no. 6 (2003): 533–34. http://dx.doi.org/10.1038/sj.hdy.6800372.

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HURST, L. D. "Comparative Genomics." Journal of Medical Genetics 38, no. 11 (2001): 807. http://dx.doi.org/10.1136/jmg.38.11.807.

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Hardison, Ross C. "Comparative Genomics." PLoS Biology 1, no. 2 (2003): e58. http://dx.doi.org/10.1371/journal.pbio.0000058.

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Hochachka✠, P., T. P. Mommsen, and P. Walsh. "Comparative Genomics." Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology 133, no. 4 (2002): 461–62. http://dx.doi.org/10.1016/s1096-4959(02)00170-7.

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Elgar, G. "Comparative Genomics." Briefings in Bioinformatics 2, no. 2 (2001): 200–202. http://dx.doi.org/10.1093/bib/2.2.200.

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Miller, Webb, Kateryna D. Makova, Anton Nekrutenko, and Ross C. Hardison. "COMPARATIVE GENOMICS." Annual Review of Genomics and Human Genetics 5, no. 1 (2004): 15–56. http://dx.doi.org/10.1146/annurev.genom.5.061903.180057.

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Bachhawat, Anand K. "Comparative genomics." Resonance 11, no. 8 (2006): 22–40. http://dx.doi.org/10.1007/bf02855776.

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Copeland, N. G. "GENOMICS: Enhanced: Mmu 16--Comparative Genomic Highlights." Science 296, no. 5573 (2002): 1617–18. http://dx.doi.org/10.1126/science.1073127.

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Pain, Arnab, Lisa Crossman, and Julian Parkhill. "Comparative Apicomplexan genomics." Nature Reviews Microbiology 3, no. 6 (2005): 454–55. http://dx.doi.org/10.1038/nrmicro1174.

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Holding, Cathy. "Caenorhabditis comparative genomics." Genome Biology 4 (2003): spotlight—20031118–08. http://dx.doi.org/10.1186/gb-spotlight-20031118-02.

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Dissertations / Theses on the topic "Comparative genomics"

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Loman, Nicholas James. "Comparative bacterial genomics." Thesis, University of Birmingham, 2012. http://etheses.bham.ac.uk//id/eprint/2839/.

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For the most part, diagnostic clinical microbiology still relies on 19th century ideas and techniques, particularly microscopy and laboratory culture. In this thesis I investigate the utility of a new approach, whole-genome sequencing (WGS), to tackle current issues in infectious disease. I present four studies. The first demonstrates the utility of WGS in a hospital outbreak of Acinetobacter baumannii. The second study uses WGS to examine the evolution of drug resistance following antibiotic treatment. I then explore the use of WGS prospectively during an international outbreak of food-borne
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Axelsson, Erik. "Comparative Genomics in Birds." Doctoral thesis, Uppsala : Acta Universitatis Upsaliensis, 2007. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-7432.

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Eriksen, Niklas. "Combinatorial methods in comparative genomics." Doctoral thesis, KTH, Mathematics, 2003. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-3508.

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Manee, Manee. "Comparative genomics of noncoding DNA." Thesis, University of Manchester, 2016. https://www.research.manchester.ac.uk/portal/en/theses/comparative-genomics-of-noncoding-dna(d16aa46c-b8a2-4e6c-b825-d4246d3775fa).html.

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High levels of primary sequence conservation are observed in many noncoding regions of eukaryotic genomes. These conserved noncoding elements (CNEs) have shown to be robust indicators of functionally constrained elements. Nevertheless, the function of only a small fraction of such CNEs is known and their role in genome biology remains largely a mystery. Comparative genomics analysis in model organisms can shed light on CNE function and evolution of noncoding DNA in general. Recently, it has been reported that short CNEs in the Drosophila genome are typically very AT-rich but have unusually hig
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Mikkelsen, Tarjei Sigurd 1978. "Mammalian comparative genomics and epigenomics." Thesis, Massachusetts Institute of Technology, 2009. http://hdl.handle.net/1721.1/52808.

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Thesis (Ph. D.)--Harvard-MIT Division of Health Sciences and Technology, 2009.<br>This electronic version was submitted by the student author. The certified thesis is available in the Institute Archives and Special Collections.<br>Cataloged from student submitted PDF version of thesis.<br>Includes bibliographical references.<br>The human genome sequence can be thought of as an instruction manual for our species, written and rewritten over more than a billion of years of evolution. Taking a complete inventory of our genome, dissecting its genes and their functional components, and elucidating
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Ryder, Carol D. "Comparative genomics of Brassica oleracea." Thesis, University of Warwick, 2012. http://wrap.warwick.ac.uk/51651/.

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The scientific case made by the AUTHOR’S comparative Brassica oleracea genomics work is presented through 5 peer reviewed research papers. In order to achieve a comprehensive understanding of the evolution of B. oleracea the identification of unique genome characteristics, established using comparative genomics, is required. The genome characteristics established within these papers deliver significant contributions to original knowledge. These include a detailed illustration of how macro scale synteny varies markedly between the B. oleracea and A. thaliana genomes; unambiguous integration of
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Dong, Xin. "Comparative genomics of rickettsia species." Thesis, Aix-Marseille, 2012. http://www.theses.fr/2012AIXM5054/document.

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Le genre Rickettsia, sont des petites bactéries Gram-négatives et symbiotes intracellulaires obligatoires des eucaryotes. Les Rickettsia sont surtout connus pour leur pathogénicité et pour provoquer des maladies graves chez l'homme et les autres animaux. À ce jour, 26 espèces valides de Rickettsies ont été identifiées dans le monde entier, dont 20 sont des agents pathogènes éprouvées. Toutes les espèces de Rickettsies validées sont associées à des arthropodes. Les phylogénies basées sur divers marqueurs moléculaires ont présenté des topologies discordantes, avec seulement R. bellii et R. canad
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Sentausa, Erwin. "Intraspecies comparative genomics of Rickettsia." Thesis, Aix-Marseille, 2013. http://www.theses.fr/2013AIXM5082/document.

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Le genre Rickettsia est composé de bactéries Gram-négatives, intracellulaires obligatoires qui causent un éventail de maladies humaines à travers le monde. Des nouvelles techniques ont permis de progresser dans l'identification et la classification des Rickettsia, y compris l'introduction de méthodes moléculaires comme la comparaison de séquences de gènes (ARNr 16S, ompA, ompB, gltA, sca4 …) et la création du statut de sous-espèce. La génomique et les techniques de séquençage de nouvelle génération ont permis d’accéder à une nouvelle façon d’en apprendre davantage sur la pathogenèse et l'évolu
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Benevides, Leandro. "Comparative Genomics of Faecalibacterium spp." Thesis, Université Paris-Saclay (ComUE), 2018. http://www.theses.fr/2018SACLS129.

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Dans le côlon humain, le genre Faecalibacterium est le membre principal du groupe Clostridium leptum et comprend le deuxième genre représentatif le plus commun dans les échantillons fécaux, après Clostridium coccoides. Il a été reconnu comme une bactérie importante favorisant la santé intestinale et est aujourd'hui considéré comme un probiotique de prochaine génération. Jusqu'à récemment, on croyait qu'il n'y avait qu'une seule espèce dans ce genre, mais depuis 2012, certaines études ont commencé à suggérer l'existence de deux phylogroupes dans le genre. Cette nouvelle proposition de reclassif
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St, Jean Andrew Louis. "Haloarchaeal comparative genomics and the local context model of genomic evolution." Thesis, University of Ottawa (Canada), 1996. http://hdl.handle.net/10393/10308.

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Genomics is a rapidly expanding field of research that seeks to study the structure, function and evolution of an organism's genome. Genomic investigations were conducted on three species of haloarchaea, a monophyletic group of prokaryotes belonging to the kingdom Euryarchaeota of the domain Archaea that are adapted to high-salt environments. A physical and genetic map of the genome of Halobacterium salinarum GRB is described. This map and the previously published map of the genome of Haloferax volcanii DS2 were compared with the object of detecting any conservation in the order or spacing of
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Books on the topic "Comparative genomics"

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H, Bergman Nicholas, ed. Comparative genomics. Humana Press, 2007.

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Nicholas, Bergman H. Comparative Genomics. Humana Press, 2007. http://dx.doi.org/10.1385/1597455148.

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Nicholas, Bergman H. Comparative Genomics. Humana Press, 2007. http://dx.doi.org/10.1385/1597455156.

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Jin, Lingling, and Dannie Durand, eds. Comparative Genomics. Springer International Publishing, 2022. http://dx.doi.org/10.1007/978-3-031-06220-9.

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Blanchette, Mathieu, and Aïda Ouangraoua, eds. Comparative Genomics. Springer International Publishing, 2018. http://dx.doi.org/10.1007/978-3-030-00834-5.

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Tesler, Glenn, and Dannie Durand, eds. Comparative Genomics. Springer Berlin Heidelberg, 2007. http://dx.doi.org/10.1007/978-3-540-74960-8.

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Tannier, Eric, ed. Comparative Genomics. Springer Berlin Heidelberg, 2010. http://dx.doi.org/10.1007/978-3-642-16181-0.

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Bergman, Nicholas H., ed. Comparative Genomics. Humana Press, 2008. http://dx.doi.org/10.1007/978-1-59745-514-5.

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Bergman, Nicholas H., ed. Comparative Genomics. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-515-2.

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Nelson, Craig E., and Stéphane Vialette, eds. Comparative Genomics. Springer Berlin Heidelberg, 2008. http://dx.doi.org/10.1007/978-3-540-87989-3.

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Book chapters on the topic "Comparative genomics"

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Eloe-Fadrosh, Emiley A., Christopher J. Mungall, Mark Andrew Miller, et al. "A Practical Approach to Using the Genomic Standards Consortium MIxS Reporting Standard for Comparative Genomics and Metagenomics." In Comparative Genomics. Springer US, 2024. http://dx.doi.org/10.1007/978-1-0716-3838-5_20.

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AbstractComparative analysis of (meta)genomes necessitates aggregation, integration, and synthesis of well-annotated data using standards. The Genomic Standards Consortium (GSC) collaborates with the research community to develop and maintain the Minimum Information about any (x) Sequence (MIxS) reporting standard for genomic data. To facilitate the use of the GSC’s MIxS reporting standard, we provide a description of the structure and terminology, how to navigate ontologies for required terms in MIxS, and demonstrate practical usage through a soil metagenome example.
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Hardison, Ross C. "Comparative Genomics." In Vogel and Motulsky's Human Genetics. Springer Berlin Heidelberg, 2010. http://dx.doi.org/10.1007/978-3-540-37654-5_21.

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Ozen, Asli Ismihan, Tammi Vesth, and David W. Ussery. "Comparative Genomics." In The Prokaryotes. Springer Berlin Heidelberg, 2013. http://dx.doi.org/10.1007/978-3-642-30194-0_11.

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Sankoff, David, and Joseph H. Nadeau. "Comparative Genomics." In Comparative Genomics. Springer Netherlands, 2000. http://dx.doi.org/10.1007/978-94-011-4309-7_1.

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Cheng, Jan-Fang, James R. Priest, and Len A. Pennacchio. "Comparative Genomics." In Methods in Molecular Biology. Humana Press, 2007. http://dx.doi.org/10.1007/978-1-59745-030-0_13.

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Xia, Xuhua. "Comparative Genomics." In Handbook of Statistical Bioinformatics. Springer Berlin Heidelberg, 2011. http://dx.doi.org/10.1007/978-3-642-16345-6_26.

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Dicks, J., and G. Savva. "Comparative Genomics." In Handbook of Statistical Genetics. John Wiley & Sons, Ltd, 2008. http://dx.doi.org/10.1002/9780470061619.ch5.

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Neale, David B., and Nicholas C. Wheeler. "Comparative Genomics." In The Conifers: Genomes, Variation and Evolution. Springer International Publishing, 2019. http://dx.doi.org/10.1007/978-3-319-46807-5_17.

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Avison, Matthew B. "Comparative Genomics." In Genomics, Proteomics, and Clinical Bacteriology. Humana Press, 2004. http://dx.doi.org/10.1385/1-59259-763-7:047.

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Backofen, Rolf, Jan Gorodkin, Ivo L. Hofacker, and Peter F. Stadler. "Comparative RNA Genomics." In Comparative Genomics. Springer US, 2024. http://dx.doi.org/10.1007/978-1-0716-3838-5_12.

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Conference papers on the topic "Comparative genomics"

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Chan, Vei Siang, Farhan Bin Mohamed, Faezah Binti Mohd Salleh, Andres Iglesias, Najwa Ayuni Binti Jamaludin, and Ikmal Faiq Albakri Mustafa Albakri. "Understanding Comparative Genomics Data Visualization for Biodiversity Domain Through Persona-Based Interviews." In 2024 IEEE International Conference on Computing (ICOCO). IEEE, 2024. https://doi.org/10.1109/icoco62848.2024.10928255.

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Rubert, Diego P., Jens Stoye, and Fábio H. V. Martinez. "Distance and Similarity Measures in Comparative Genomics." In Concurso de Teses e Dissertações da SBC. Sociedade Brasileira de Computação - SBC, 2020. http://dx.doi.org/10.5753/ctd.2020.11361.

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Research in comparative genomics supports the investigation of important questions in molecular biology, genetics and biomedicine. A central question in this field is the elucidation of similarities and differences between genomes by means of different measures. This summary, submitted to CTD 2020, briefly describes the main contributions, originality and impact possibilities of the thesis entitled "Distance and Similarity Measures in Comparative Genomics", by Diego P. Rubert.
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Narasimhan, Giri. "Invited: Comparative microbial genomics." In 2011 IEEE 1st International Conference on Computational Advances in Bio and Medical Sciences (ICCABS). IEEE, 2011. http://dx.doi.org/10.1109/iccabs.2011.5729947.

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Ideker, Trey. "PROTEIN NETWORK COMPARATIVE GENOMICS." In Proceedings of the Conference CSB 2006. PUBLISHED BY IMPERIAL COLLEGE PRESS AND DISTRIBUTED BY WORLD SCIENTIFIC PUBLISHING CO., 2006. http://dx.doi.org/10.1142/9781860947575_0004.

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Nooblath, Reno S., Daniel H. Gomes, Sintia S. Almeida, and Vinícius A. Abreu. "Unraveling Evolutionary Paths: Genomic Divergence and Geographic Secrets of Cylindrospermopsis and Sphaerospermopsis." In Simpósio Brasileiro de Bioinformática. Sociedade Brasileira de Computação, 2024. https://doi.org/10.5753/bsb.2024.245607.

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This study aims to investigate the biological diversity of 21 genomes of Cylindrospermopsis and 6 genomes of Sphaerospermopsis belonging to the family Aphanizomenonaceae using bioinformatics methods in comparative genomics. The comparative analysis of the lineages of the groups From the Americas, Non-Americas and Sphaerospermospsis revealed conserved central genome but with different accessory genomes by geographic region. The variations observed in the organization of saxitoxin and cylindrospermopsin genes in the accessory genome of Cylindrospermopsis raciborskii from the Americas and NonAmer
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DUBCHAK, INNA, LIOR PACHTER, and LIPING WEI. "GENOME-WIDE ANALYSIS AND COMPARATIVE GENOMICS." In Proceedings of the Pacific Symposium. WORLD SCIENTIFIC, 2001. http://dx.doi.org/10.1142/9789812799623_0011.

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PEREGRÍN-ALVAREZ, JOSÉ M., and CHRISTOS A. OUZOUNIS. "THE COMPARATIVE GENOMICS OF PROTEIN INTERACTIONS." In Proceedings of the 18th International Conference. PUBLISHED BY IMPERIAL COLLEGE PRESS AND DISTRIBUTED BY WORLD SCIENTIFIC PUBLISHING CO., 2007. http://dx.doi.org/10.1142/9781860949852_0012.

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Smith, Jack A., Melissa Romanus, Pradeep Kumar Mantha, Yaakoub El Khamra, Thomas C. Bishop, and Shantenu Jha. "Scalable online comparative genomics of mononucleosomes." In XSEDE '13: Extreme Science and Engineering Discovery Environment: Gateway to Discovery. ACM, 2013. http://dx.doi.org/10.1145/2484762.2484819.

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"Comparative characteristics of barley hybrids by the anthocyanins content in grain." In Plant Genetics, Genomics, Bioinformatics, and Biotechnology. Novosibirsk ICG SB RAS 2021, 2021. http://dx.doi.org/10.18699/plantgen2021-114.

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Goni Urriza, Marisol, Bahia Khalfaoui-Hassani, Mathilde Monperrus, and Remy Guyoneaud. "Comparative Genomics on Mercury Methylators (Pseudo)Desulfovibrio Strains." In Goldschmidt2020. Geochemical Society, 2020. http://dx.doi.org/10.46427/gold2020.857.

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Reports on the topic "Comparative genomics"

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Lennie, Peter. Facilities and Equipment for Genomics/Comparative Functional Genomics at New York University. Office of Scientific and Technical Information (OSTI), 2006. http://dx.doi.org/10.2172/898062.

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Ge, Hong, Yao-Yu E. Chang, Shuping Zhao, et al. Comparative Genomics of Ricketttsia prowazekii Madrid E and Breinl Strains. Defense Technical Information Center, 2004. http://dx.doi.org/10.21236/ada455008.

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Voss, Stephen R. Application of Comparative Functional Genomics to Identify Regeneration-Specific Genes. Defense Technical Information Center, 2014. http://dx.doi.org/10.21236/ada613190.

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Lewinsohn, Efraim, Peter Facchini, and Frederic Marsolais. Comparative Functional Genomics as a Platform to Investigate Ephedrine Alkaloid Biosynthesis in Plants. United States Department of Agriculture, 2009. http://dx.doi.org/10.32747/2009.7613886.bard.

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Borodovsky, M. New Markov Model Approaches to Deciphering Microbial Genome Function and Evolution: Comparative Genomics of Laterally Transferred Genes. Office of Scientific and Technical Information (OSTI), 2013. http://dx.doi.org/10.2172/1073499.

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Qiu, D., Q. Tu, Zhili He, and Jizhong Zhou. Comparative Genomics Analysis and Phenotypic Characterization of Shewanella putrefaciens W3-18-1: Anaerobic Respiration, Bacterial Microcompartments, and Lateral Flagella. Office of Scientific and Technical Information (OSTI), 2010. http://dx.doi.org/10.2172/986497.

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Dubcovsky, Jorge, Tzion Fahima, Tamar Krugman, and Tyson Howell. Positional cloning of a rye QTL responsible for water stress resistance in wheat based on radiation mapping and comparative genomics. United States Department of Agriculture, 2016. http://dx.doi.org/10.32747/2016.7604265.bard.

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Katzir, Nurit, James Giovannoni, and Joseph Burger. Genomic approach to the improvement of fruit quality in melon (Cucumis melo) and related cucurbit crops. United States Department of Agriculture, 2006. http://dx.doi.org/10.32747/2006.7587224.bard.

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Fruit quality is determined by numerous genetic traits that affect taste, aroma, texture, pigmentation, nutritional value and duration of shelf-life. The molecular basis of many of these important traits is poorly understood and it’s understanding offers an excellent opportunity for adding value to agricultural products. Improvement of melon fruit quality was the primary goal of the project. The original objectives of the project were: The isolation of a minimum of 1000 fruit specific ESTs. The development of a microarray of melon fruit ESTs. The analysis of gene expression in melon using melo
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Clark, Steven M. Comparative Genomic Hybridization Onto Dense Arrays of DNA Clones: Development and Application to Breast Cancer Genomes. Defense Technical Information Center, 1998. http://dx.doi.org/10.21236/ada357608.

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Hulata, Gideon, Thomas D. Kocher, Micha Ron, and Eyal Seroussi. Molecular Mechanisms of Sex Determination in Cultured Tilapias. United States Department of Agriculture, 2010. http://dx.doi.org/10.32747/2010.7697106.bard.

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Tilapias are among the most important aquaculture commodities worldwide. Commercial production of tilapia is based on monosex culture of males. Current methods for producing all-male fingerlings, including hormone treatments and genetic manipulations, are not entirely reliable, in part because of the genetic complexity of sex determination and sexual differentiation in tilapias. The goals of this project are to map QTL and identify genes regulating sex determination in commonly cultured tilapia species, in order to provide a rational basis for designing reliable genetic approaches for producin
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