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1

Hartmut, Frank, Holmstedt Bo, Testa Bernard, and Tübingen Symposium on Chirality and Biological Activity (1st : 1988), eds. Chirality and biological activity: Proceedings of an international symposium held at Tubingen, Federal Republic of Germany, April 5-8, 1988. A.R. Liss, 1990.

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2

Kwon, Youngah. Understanding and Controlling Conjugated Polymer Conformation and Photophysics: From Single Molecules to Aggregates. [publisher not identified], 2020.

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3

1946-, Sedzik Jan, Riccio Paolo 1942-, Karolinska institutet, and MARIE Network, eds. Molecules: Nucleation, aggregation, and crystallization : beyond medical and other implications. World Scientific, 2009.

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4

1923-, Ramaseshan S., Balaram P, and Ramachandran G. N. 1922-, eds. Molecular conformation and biological interactions. Indian Academy of Sciences, 1991.

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5

Brogaard, Rasmus Y. Molecular Conformation and Organic Photochemistry. Springer Berlin Heidelberg, 2012. http://dx.doi.org/10.1007/978-3-642-29381-8.

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6

Crippen, G. M. Distance geometry and molecular conformation. Research Studies Press, 1988.

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7

Hamaguchi, Kōzō. The protein molecule: Conformation, stability, and folding. Japan Scientific Societies Press, 1992.

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8

NATO, Advanced Research Workshop on Structures and Conformations of Non-Rigid Molecules (1992 Reisensburg Germany). Structures and conformations of non-rigid molecules. Kluwer Academic Publishers, 1993.

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9

Laane, Jaan, Marwan Dakkouri, Ben Veken, and Heinz Oberhammer, eds. Structures and Conformations of Non-Rigid Molecules. Springer Netherlands, 1993. http://dx.doi.org/10.1007/978-94-011-2074-6.

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10

J, Langone John, ed. Molecular design and modeling: Concepts and applications. Academic Press, 1991.

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11

Hendrickson, Bruce A. The molecular problem: Determining conformation from pairwise distances. Cornell Theory Center, Cornell University, 1990.

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12

Subbiah, S. Protein motions. Chaoman & Hall, 1996.

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13

service), SpringerLink (Online, ed. Molecular Conformation and Organic Photochemistry: Time-resolved Photoionization Studies. Springer Berlin Heidelberg, 2012.

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14

Mitsuru, Nagasawa, Kurata Michio 1925-, and Toyota Conference, (1st : 1987 : Inuyama City,Japan), eds. Molecular conformation and dynamics of macromolecules in condensed systems. Elsevier, 1988.

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15

D, Fasman Gerald, ed. Circular dichroism and the conformational analysis of biomolecules. Plenum Press, 1996.

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16

Joël, Janin, and Wodak Shoshana J, eds. Protein modules and protein-protein interaction. Academic Press, 2002.

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17

1935-, Wu Tai Te, ed. New methodologies in studies of protein configuration. Van Nostrand Reinhold, 1985.

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18

Dodziuk, Helena. Modern conformational analysis: Elucidating novel exciting molecular structures. VCH, 1995.

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19

Keresü, G. M. Molecular mechanics and conformational analysis in drug design. Blackwell Science, 1999.

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20

Coleman, Thomas F. Parallel continuation-based global optimization for molecular conformation and protein folding. Cornell Theory Center, Cornell University, 1994.

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21

Dapporto, Paolo, Paola Paoli, Patrizia Rossi, and Annalisa Guerri. The UTN program. Firenze University Press, 2001. http://dx.doi.org/10.36253/88-8453-032-6.

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We give an algorithm which goal is to find the energy barrier between a given pair of points in a graph which represents the conformational space of a molecule. If the conformational space is homeomorphic to an -dimensional torus, then the graph can be chosen of a particular form. The UTN software, which implements the algorithm in this case, is described in detail. Finally we focus on applications: to show how UTN works, some examples are carried on in detail, with the additional support of graphical animation1 in the twodimensional case. The source code of the program and some data of the ex
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22

Mattice, Wayne L. Conformational theory of large molecules: The rotationalisomeric state model in macromolecular systems. Wiley, 1994.

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23

Pines, Maya. The structures of life: Discovering the molecular shapes that determine health or disease. U.S. Dept. of Health and Human Services, Public Health Service, National Institutes of Health, National Institute of General Medical Sciences, 1988.

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24

Pines, Maya. The structures of life: Discovering the molecular shapes that determine health or disease. U.S. Dept. of Health and Human Services, Public Health Service, National Institutes of Health, National Institute of General Medical Sciences, 1991.

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25

Kolster, Rachel Ann. Single-Molecule Imaging of Conformational Dynamics in a Neurotransmitter Transporter Homolog. [publisher not identified], 2016.

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26

D, Brasseur Robert Ph, ed. Molecular description of biological membranes by computer aided conformational analysis. CRC Press, 1990.

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27

1935-, Suter U., ed. Conformational theory of large molecules: The rotational isomeric state model in macromolecular systems. Wiley, 1994.

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28

1944-, Langone John J., ed. Molecular design and modeling: Concepts and applications. Part A, Proteins, peptides, and enzymes. Academic Press, 1991.

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29

L, Oxender Dale, ed. Protein structure, folding, and design: Proceedings of the GENEX-UCLA Symposium, held in Keystone, Colorado, March 30-April 6, 1985. Liss, 1986.

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30

Wunderlich, Bernhard, Martin Möller, Janusz Grebowicz, and Herbert Baur. Conformational Motion and Disorder in Low and High Molecular Mass Crystals. Springer Berlin Heidelberg, 1988. http://dx.doi.org/10.1007/bfb0008607.

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31

Toyota Conference (1st 1987 Inuyama-shi, Japan). Molecular conformation and dynamics of macromolecules in condensed systems: A collection of contributions based on lectures presented at the 1st Toyota Conference, Inuyama City, Japan, 28 September-1 October 1987. Elsevier, 1988.

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32

Jonker, Stephanus Antonius. 9-Arylacridinium ions: Electrochemical, photophysical and chromofluoroionophoric properties in relation to molecular structure and conformation. [s.n.], 1989.

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33

Elizabe, Laurent. Conformational and structural studies of urea inclusion compounds and other molecular solids. University of Birmingham, 1998.

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34

Torres, F. G. Polymer and polymer composite flows: Modelling of molecular chain conformations and reinforcing fibre orientations. UMIST, 1997.

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35

Neil, Osheroff, and Bjornsti Mary-Ann, eds. DNA topoisomerase protocols. Humana Press, 2001.

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36

Neil, Osheroff, and Bjornsti Mary-Ann, eds. DNA topoisomerase protocols. Humana Press, 2001.

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37

L, Oxender Dale, ed. Protein structure, folding, and design 2: Proceedings of a Dupont-UCLA Symposium held in Steamboat Springs, Colorado, April 4-11, 1987. Liss, 1987.

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38

Switching and movements of protein molecules and their assemblies. Japan Scientific Societies Press, 1990.

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39

Govil, Girjesh, and Ramakrishna V. Hosur. Conformation of Biological Molecules: New Results from NMR. Springer, 2011.

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40

Macromolecular molecules. Academic, 2003.

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41

Foldamers: Structure, Properties, and Applications. Wiley-VCH, 2007.

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42

Hecht, Stefan, and Ivan Huc. Foldamers: Structure, Properties and Applications. Wiley & Sons, Limited, John, 2007.

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43

Hecht, Stefan, and Ivan Huc. Foldamers: Structure, Properties, and Applications. Wiley & Sons, Incorporated, John, 2007.

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44

Hecht, Stefan, and Ivan Huc. Foldamers: Structure, Properties and Applications. Wiley & Sons, Incorporated, John, 2007.

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45

Designing Bioactive Molecules: Three-Dimensional Techniques and Applications (Computer Applications in Chemistry Collection). An American Chemical Society Publication, 1998.

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46

Molecular Conformations. Bookboon, 2013.

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47

Molecular Conformations. Bookboon.com, 2013.

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48

Molecular Conformations. Bookboon, 2013.

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49

Molecular Conformations. Bookboon.com, 2013.

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50

Molecular Conformations. Bookboon, 2013.

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