Relevant bibliographies by topics / Copasi

Contents

  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
  6. Reports

Academic literature on the topic 'Copasi'

Author: Grafiati
Published: 4 June 2021
Last updated: 3 February 2022

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Journal articles on the topic "Copasi"

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Förster, Jonas, Frank T. Bergmann, and Jürgen Pahle. "CoRC: the COPASI R Connector." Bioinformatics 37, no. 17 (2021): 2778–79. http://dx.doi.org/10.1093/bioinformatics/btab033.

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Abstract Motivation COPASI is a biochemical simulator and model analyzer which has found widespread use in academic research, teaching and beyond. One of COPASI’s strengths is its graphical user interface, and this is what most users work with. COPASI also provides a command-line tool. So far, an intuitive scripting interface that allows the creation and documentation of systems biology workflows was missing though. Results We have developed CoRC, the COPASI R Connector, an R package which provides a high-level scripting interface for COPASI. It closely mirrors the thought process of a (graphi
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Hoops, S., S. Sahle, R. Gauges, et al. "COPASI--a COmplex PAthway SImulator." Bioinformatics 22, no. 24 (2006): 3067–74. http://dx.doi.org/10.1093/bioinformatics/btl485.

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Welsh, Ciaran M., Nicola Fullard, Carole J. Proctor, et al. "PyCoTools: a Python toolbox for COPASI." Bioinformatics 34, no. 21 (2018): 3702–10. http://dx.doi.org/10.1093/bioinformatics/bty409.

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Schaber, Jörg. "Easy parameter identifiability analysis with COPASI." Biosystems 110, no. 3 (2012): 183–85. http://dx.doi.org/10.1016/j.biosystems.2012.09.003.

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Bergmann, Frank T., Stefan Hoops, Brian Klahn, et al. "COPASI and its applications in biotechnology." Journal of Biotechnology 261 (November 2017): 215–20. http://dx.doi.org/10.1016/j.jbiotec.2017.06.1200.

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Kent, Edward, Stefan Hoops, and Pedro Mendes. "Condor-COPASI: high-throughput computing for biochemical networks." BMC Systems Biology 6, no. 1 (2012): 91. http://dx.doi.org/10.1186/1752-0509-6-91.

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Bergmann, Frank T., Sven Sahle, and Christoph Zimmer. "Piecewise parameter estimation for stochastic models in COPASI." Bioinformatics 32, no. 10 (2016): 1586–88. http://dx.doi.org/10.1093/bioinformatics/btv759.

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Elsts, Atis, Agris Pentjuss, and Egils Stalidzans. "SpaceScanner: COPASI wrapper for automated management of global stochastic optimization experiments." Bioinformatics 33, no. 18 (2017): 2966–67. http://dx.doi.org/10.1093/bioinformatics/btx363.

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Phelix, Clyde, Greg Villareal, Miriam Perez-Cordova, Sofia Hernandez, George Perry, and Luis Colom. "P3-395: Reanimating basal forebrain cholinergic neurons in electrophysiology biosimulations using COPASI software." Alzheimer's & Dementia 8, no. 4S_Part_16 (2012): P593—P594. http://dx.doi.org/10.1016/j.jalz.2012.05.2069.

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Koshy-Chenthittayil, S., E. Dimitrova, E. W. Jenkins, and B. C. Dean. "A computational framework for finding parameter sets associated with chaotic dynamics." In Silico Biology 14, no. 1-2 (2021): 41–51. http://dx.doi.org/10.3233/isb-200476.

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Many biological ecosystems exhibit chaotic behavior, demonstrated either analytically using parameter choices in an associated dynamical systems model or empirically through analysis of experimental data. In this paper, we use existing software tools (COPASI, R) to explore dynamical systems and uncover regions with positive Lyapunov exponents where thus chaos exists. We evaluate the ability of the software’s optimization algorithms to find these positive values with several dynamical systems used to model biological populations. The algorithms have been able to identify parameter sets which le
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Dissertations / Theses on the topic "Copasi"

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Monier, Antoine. "Rôle des phosphatases acides dans le métabolisme et le stockage des sucres dans la vacuole chez Arabidopsis thaliana : approches in vitro et in silico." Thesis, Bordeaux 1, 2012. http://www.theses.fr/2012BOR14709/document.

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Les « Purple Acid Phosphatases » (PAPs) sont des phosphatases acides présentes dans le règne végétal et animal. Elles sont caractérisées à la fois par la présence de sept acides aminés conservés impliqués dans la structure d’un centre bimétallique et par leur couleur rose/violète lorsqu’elles se trouvent en solution. Chez les plantes, certaines PAPs présenteraient à la fois une activité phosphatase sur des métabolites (PEP, G6P…) et sur des phospho-peptides (glycosidases…), d’une part, et une activité peroxydase, de l’autre. Ces PAPs pourraient donc, non seulement être impliquées dans le métab
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Rhiel, Manuel [Verfasser], and Felix T. [Akademischer Betreuer] Wieland. "Vesicular Proteomics: Isoforms of the COPI and COPII coats - Implications in Protein Sorting and Disease / Manuel Rhiel ; Betreuer: Felix Wieland." Heidelberg : Universitätsbibliothek Heidelberg, 2018. http://d-nb.info/1177384957/34.

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Papadopoulos, A. K. "The drainage and exploitation of Lake Copais (1908-1938) : socio-economic implications of the exploitation of Lake Copais, Greece : a history of the Lake Copais question, 1908-1938, with special reference to the relations between State, Company and the peasant communities of the area." Thesis, University of Bradford, 1993. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.587515.

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The thesis investigates the long history of the drainage of the Lake Copais in Boeotia, Greece in the 19th and 20th century and examines the social, political and mainly the economic implications of the exploitation of the revealed lands in the wider area of Boeotia. The study begins with a geographical portrayal of the area concerned prior to the drainage which, together with its geological description and the climatic conditions in the past, provide the reader with vital introductory information. At the same time, the area's demographic structure after the drainage, presented in the second p
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Fiorini, Erin. "COPISA in Ecuador: Participation that Wasn't." Thesis, The University of Arizona, 2015. http://hdl.handle.net/10150/595609.

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Ecuador codified participatory democracy and food sovereignty in its 2008 constitution. It also called for the creation of a food sovereignty bill to expand and detail legal protections for these valued practices. In 2009, legislators proposed a bill to the president. It called for indigenous and peasant farmers' increased access to state agricultural resources, such as land and loans, and the ability to direct national government agricultural policy. In essence, legislators wanted to democratize Ecuador's agricultural economic model, one that had long marginalized peasant farmers who grow tra
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Zeneratti, Fábio Luiz. "O assentamento rural coletivo COPAVI : contradições e avanços no processo de territorialização camponesa." Universidade Estadual de Londrina. Centro de Ciências Exatas. Programa de Pós-Graduação em Geografia, 2012. http://www.bibliotecadigital.uel.br/document/?code=vtls000178001.

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As reflexões contidas neste trabalho se inserem no debate sobre a pertinência da reforma agrária no contexto da elevada concentração fundiária brasileira, tendo como recorte empírico a Cooperativa de Produção Agropecuária Vitória (COPAVI), uma experiência de assentamento rural fundada no trabalho coletivo sob uma modalidade de cooperativismo que alcançou êxito em poucas experiências, posto que a maioria dos assentados, ao alcançarem o acesso à terra, tendem a explorá-la individualmente. Longe de se ocupar da oposição que frequentemente é invocada para indagar qual é o melhor modelo de assentam
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Andrade, Marcela Meio da Silva. "COpa." Master's thesis, Universidade de Lisboa, Faculdade de Arquitetura, 2020. http://hdl.handle.net/10400.5/21850.

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Dissertação de Mestrado Integrado em Arquitetura<br>Com a análise da Vertente Sul de Odivelas entende-se a necessidade de potencializar as suas áreas urbanas fragmentadas. Com a oportunidade existente do Parque Rio da Costa é possível gerar uma continuidade da área verde no bairro constituindo a proposta de intervenção urbana dos Corredores Verdes. O projeto arquitetônico proposto, é inserido nesta proposta urbana, onde se procura uma consolidação do bairro multicultural, sem que este perca sua característica identitária das hortas familiares de subsistência. Para o desenvolvimento deste tra
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Souza, João Paulo de. "Estrutura e funcionamento de copas em espécies arbóreas de cerrado com distintas fenologias foliares." Universidade Federal de São Carlos, 2009. https://repositorio.ufscar.br/handle/ufscar/1622.

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Made available in DSpace on 2016-06-02T19:29:11Z (GMT). No. of bitstreams: 1 2333.pdf: 1167610 bytes, checksum: 08add5591eebb8975102b0da61c5a572 (MD5) Previous issue date: 2009-02-20<br>Universidade Federal de Sao Carlos<br>The relationships among shoot inclination, light interception, photosynthetic capacity along shoot, biomass partitioning in leaves and shoots and the canopy structure were investigated in deciduous, semideciduous and evergreen tree species in Cerrado vegetation. The principal aim was to investigate the functioning and the structure of the canopies in cerrado tree species.
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Cunha, Silvia Regina. "Combinações copas e portaenxertos na produtividade e composição bioativa de uvas e sucos integrais /." Botucatu, 2019. http://hdl.handle.net/11449/192541.

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Orientador: Marco Antonio Tecchio<br>Resumo: O trabalho teve como objetivo avaliar o potencial produtivo das videiras, além de determinar o conteúdo de ácidos orgânicos, açúcares, compostos bioativos e a atividade antioxidante em uvas e sucos de uva de cultivares Vitis labrusca e híbridas cultivadas sobre diferentes portaenxertos sob condições tropicais na região Noroeste do Sudeste do Brasil. O experimento foi realizado em vinhedo do Instituto Agronômico, em Votuporanga, Estado de São Paulo. Foram avaliadas as cultivares Isabel Precoce, BRS Carmem, BRS Cora e IAC 138-22 ‘Máximo’ enxertadas so
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Urseth, Hågen. "Design of Beam Ends with Copes." Thesis, Norges teknisk-naturvitenskapelige universitet, Institutt for konstruksjonsteknikk, 2013. http://urn.kb.se/resolve?urn=urn:nbn:no:ntnu:diva-22652.

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Coping of beams is usually done in order to allow for clearance at connections, but doing so reduces the beams strength and makes it susceptible to local web buckling at the coped section. Due to this reduction of the beam&apos;s strength, it was of interest to reinforce the web at the coped end. Previous researchers have proposed several design recommendations for reinforcement of coped beams. Possible measures involves welding on endplates or use of bolted connections at the coped end, and provision of stiffeners at the coped region.In this thesis a numerical study on the coped beam&apos;s s
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Siedziako, Bartosz. "Analysis of beam ends with copes." Thesis, Norges teknisk-naturvitenskapelige universitet, Institutt for konstruksjonsteknikk, 2014. http://urn.kb.se/resolve?urn=urn:nbn:no:ntnu:diva-25632.

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The reaction of the ultimate loads predicted by the FEM analyses to the real values obtained in the laboratory ranges from 0,964 to 0,998 which can be considered as a very accurate. It means that the results from analyses underestimate capacity of the cross-section from 0,2% to 3,56% with 1,49% as a middle value for all six specimens. For reinforced by stiffeners samples it turned out that although HAZ effect decrease dramatically properties of the material, zone of the HAZ is not large and welding additional stiffeners can actually be very good solution for reinforcement of the beam. HAZ effe
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Books on the topic "Copasi"

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Sar, Irfan L. Sarjana copas. Homidea Creative, 2012.

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Martínez, Uriel. Vengan copas. Ediciones Casa Juan Pablos, 2000.

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Pons, Elena Torres. As de copas. Rialla Editores, 1999.

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Amable, Angel. Haz de copas. Ediciones Pirámide, 1990.

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Rey, Graciela Prieto. Bar de copas. Palabrava, 2012.

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Bavio, Jorge Díaz. Coplas. Gofica Editora, 1998.

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Jorge, Manrique. Coplas. Acento Editorial, 1998.

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Velazco, Carlos. Coplas. Citerea, 2003.

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Costa, Ricardo Miguel. Arbol de tres copas. Filofalsía, 1988.

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Punzi, Orlando Mario. El dos de copas. Edición "Aves de un mismo Plumaje", 1988.

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Book chapters on the topic "Copasi"

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Marchisio, Mario Andrea. "Circuit Analysis with COPASI." In Introduction in Synthetic Biology. Springer Singapore, 2018. http://dx.doi.org/10.1007/978-981-10-8752-3_11.

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Mendes, Pedro, Stefan Hoops, Sven Sahle, Ralph Gauges, Joseph Dada, and Ursula Kummer. "Computational Modeling of Biochemical Networks Using COPASI." In Methods in Molecular Biology. Humana Press, 2009. http://dx.doi.org/10.1007/978-1-59745-525-1_2.

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Gooch, Jan W. "Copals." In Encyclopedic Dictionary of Polymers. Springer New York, 2011. http://dx.doi.org/10.1007/978-1-4419-6247-8_2909.

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Alinezhad, Alireza, and Javad Khalili. "COPRAS Method." In New Methods and Applications in Multiple Attribute Decision Making (MADM). Springer International Publishing, 2019. http://dx.doi.org/10.1007/978-3-030-15009-9_12.

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Tang, Weici, and Gerhard Eisenbrand. "Coptis spp." In Chinese Drugs of Plant Origin. Springer Berlin Heidelberg, 1992. http://dx.doi.org/10.1007/978-3-642-73739-8_47.

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Gooch, Jan W. "Copal." In Encyclopedic Dictionary of Polymers. Springer New York, 2011. http://dx.doi.org/10.1007/978-1-4419-6247-8_2906.

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Bährle-Rapp, Marina. "Copal." In Springer Lexikon Kosmetik und Körperpflege. Springer Berlin Heidelberg, 2007. http://dx.doi.org/10.1007/978-3-540-71095-0_2405.

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Khare, C. P. "Coptis teeta Wall." In Indian Medicinal Plants. Springer New York, 2007. http://dx.doi.org/10.1007/978-0-387-70638-2_395.

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Bährle-Rapp, Marina. "Coptis Japonica Extract." In Springer Lexikon Kosmetik und Körperpflege. Springer Berlin Heidelberg, 2007. http://dx.doi.org/10.1007/978-3-540-71095-0_2415.

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Gooch, Jan W. "Angola Copal." In Encyclopedic Dictionary of Polymers. Springer New York, 2011. http://dx.doi.org/10.1007/978-1-4419-6247-8_628.

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Conference papers on the topic "Copasi"

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Sahle, Sven, Ralph Gauges, Jurgen Pahle, et al. "Simulation of Biochemical Networks using Copasi - A Complex Pathway Simulator." In 2006 Winter Simulation Conference. IEEE, 2006. http://dx.doi.org/10.1109/wsc.2006.322945.

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Phelix, Clyde F., Greg Villareal, Richard G. LeBaron, and Dawnlee J. Roberson. "Molecular neural model recreates electrophysiology: Transcriptome-To-Physiome™ NeurobioSimulations using COPASI® software." In 2013 6th International IEEE/EMBS Conference on Neural Engineering (NER). IEEE, 2013. http://dx.doi.org/10.1109/ner.2013.6695901.

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Park, Jinsu, Seongbeom Park, and Woongki Baek. "CoPart." In EuroSys '19: Fourteenth EuroSys Conference 2019. ACM, 2019. http://dx.doi.org/10.1145/3302424.3303963.

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Sehic, Sanjin, Fei Li, and Schahram Dustdar. "COPAL-ML." In Proceeding of the 2nd workshop. ACM Press, 2011. http://dx.doi.org/10.1145/1988051.1988053.

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Xiang, K. L., A. S. Erst, T. V. Erst, and W. Wang. "Phylogenetic systematics and biogeography of Coptis (Ranunculaceae), an eastern Asian and North American genus." In Problems of studying the vegetation cover of Siberia. TSU Press, 2020. http://dx.doi.org/10.17223/978-5-94621-927-3-2020-52.

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The goldthread genus Coptis includes 15 species disjunctly distributed in eastern Asia and North America. Here, we provide a dated phylogeny for the genus with all 15 species. Our results indicate that Coptis contains two strongly supported clades (I and II). Clade I consists of subg. Coptis and sect. Japonocoptis of subg. Metacoptis; clade II composes sect. Japonocoptis of subg. Metacoptis. Central leaflet base, sepal shape, and petal blade carry a strong phylogenetic signal in Coptis, while leaf type, sepal and petal color, and petal shape exhibit relatively higher levels of evolutionary fle
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Rufino, Jose, Ana I. Pereira, and Jan Pidanic. "coPSSA - Constrained Parallel Stretched Simulated Annealing." In 2015 25th International Conference Radioelektronika (RADIOELEKTRONIKA. IEEE, 2015. http://dx.doi.org/10.1109/radioelek.2015.7129044.

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Touriño, Juan, Xesús P. González, Francisco F. Rivera, et al. "COPA." In the ninth ACM international symposium. ACM Press, 2001. http://dx.doi.org/10.1145/512161.512174.

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Arun, Venkat, and Hari Balakrishnan. "Copa." In ANRW '18: Applied Networking Research Workshop. ACM, 2018. http://dx.doi.org/10.1145/3232755.3232783.

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Afshar, Ardavan, Ioakeim Perros, Evangelos E. Papalexakis, Elizabeth Searles, Joyce Ho, and Jimeng Sun. "COPA." In CIKM '18: The 27th ACM International Conference on Information and Knowledge Management. ACM, 2018. http://dx.doi.org/10.1145/3269206.3271775.

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Nikolaidis, Georgios, Mark Handley, Kyle Jamieson, and Brad Karp. "COPA." In CoNEXT '15: Conference on emerging Networking Experiments and Technologies. ACM, 2015. http://dx.doi.org/10.1145/2716281.2836103.

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Reports on the topic "Copasi"

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Chan, K., J. Seligson, D. Durham, et al. COPS Usage for Policy Provisioning (COPS-PR). RFC Editor, 2001. http://dx.doi.org/10.17487/rfc3084.

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Boyle, J., R. Cohen, D. Durham, R. Rajan, and A. Sastry. COPS usage for RSVP. Edited by S. Herzog. RFC Editor, 2000. http://dx.doi.org/10.17487/rfc2749.

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Anderson, James. Traders, Cops and Robbers. National Bureau of Economic Research, 2003. http://dx.doi.org/10.3386/w9572.

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Meyer, Mike, John L. Conway, and Alexander M. Wathen. CADRE Quick-Look: Sky Cops. Defense Technical Information Center, 2005. http://dx.doi.org/10.21236/ada432511.

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Dolan, E. D., and J. J. More. Benchmarking optimization software with COPS. Office of Scientific and Technical Information (OSTI), 2001. http://dx.doi.org/10.2172/775270.

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Dolan, E. D., J. J. More, and T. S. Munson. Benchmarking optimization software with COPS 3.0. Office of Scientific and Technical Information (OSTI), 2004. http://dx.doi.org/10.2172/834714.

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Boyle, J., R. Cohen, S. Herzog, R. Rajan, and A. Sastry. The COPS (Common Open Policy Service) Protocol. Edited by D. Durham. RFC Editor, 2000. http://dx.doi.org/10.17487/rfc2748.

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Bondarenko, A. S., D. M. Bortz, and J. J. More. COPS: Large-scale nonlinearly constrained optimization problems. Office of Scientific and Technical Information (OSTI), 2000. http://dx.doi.org/10.2172/751934.

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Dafny, Leemore, Christopher Ody, and Matthew Schmitt. When Discounts Raise Costs: The Effect of Copay Coupons on Generic Utilization. National Bureau of Economic Research, 2016. http://dx.doi.org/10.3386/w22745.

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Heiken, G., D. Eppler, K. Wohletz, W. Flores, N. Ramos, and A. Ritchie. Geology of the platanares geothermal site, Departamento de Copan, Honduras, Central America. Field report. Office of Scientific and Technical Information (OSTI), 1986. http://dx.doi.org/10.2172/5509289.

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