Academic literature on the topic 'Coral aragonite'

Microstructural and compositional data support the view that the skeletons of rugose corals consisted of (probably high-Mg) calcite, unlike the skeletons of scleractinian corals which are predominantly aragonitic. Total transformation of a late Permian rugose coral skeleton into neomorphic calcite and a significant trace element composition, however, show that aragonite was present in some Rugosa shortly prior to the extinction of this order. This finding sheds new light on the possible phylogenetic relationship between Rugosa and Scleractinia, which still possess a different mode of septal insertion and remain separated by an as yet coral-free interval in the Lower Triassic.

Abstract. The isotopic and elemental systematics of boron in aragonitic coral skeletons have recently been developed as a proxy for the carbonate chemistry of the coral extracellular calcifying fluid. With knowledge of the boron isotopic fractionation in seawater and the B∕Ca partition coefficient (KD) between aragonite and seawater, measurements of coral skeleton δ11B and B∕Ca can potentially constrain the full carbonate system. Two sets of abiogenic aragonite precipitation experiments designed to quantify KD have recently made possible the application of this proxy system. However, while different KD formulations have been proposed, there has not yet been a comprehensive analysis that considers both experimental datasets and explores the implications for interpreting coral skeletons. Here, we evaluate four potential KD formulations: three previously presented in the literature and one newly developed. We assess how well each formulation reconstructs the known fluid carbonate chemistry from the abiogenic experiments, and we evaluate the implications for deriving the carbonate chemistry of coral calcifying fluid. Three of the KD formulations performed similarly when applied to abiogenic aragonites precipitated from seawater and to coral skeletons. Critically, we find that some uncertainty remains in understanding the mechanism of boron elemental partitioning between aragonite and seawater, and addressing this question should be a target of additional abiogenic precipitation experiments. Despite this, boron systematics can already be applied to quantify the coral calcifying fluid carbonate system, although uncertainties associated with the proxy system should be carefully considered for each application. Finally, we present a user-friendly computer code that calculates coral calcifying fluid carbonate chemistry, including propagation of uncertainties, given inputs of boron systematics measured in coral skeleton.

Abstract Early diagenetic changes occurring in aragonite coral skeletons were characterized at the micro- and ultra-structural scales in living and fossil scleractinian colonies, the latter of Pleistocene age. The skeleton of scleractinian corals, like all biomineralized structures, is a composite material formed by the intimate association of inorganic aragonite crystallites and organic matrices. In addition to its organo-mineral duality, the scleractinian skeleton is formed by the three-dimensional arrangement of two clearly distinct basic structural features, the centers of calcification and the fibers. The latter are typically characterized by a transverse micron-scale zonation revealing their incremental growth process. The size, geometry and three-dimensional arrangement of calcification centers and fibers are taxon-specific. The earliest diagenetic modifications of these skeletons have been clearly recognized in the older parts of living colonies. The first steps of diagenesis therefore take place only a few years after the skeleton had been secreted by the living polyps, and in the same environmental conditions. Comparisons with the uppermost living parts of the coral colonies clearly show that these first diagenetic changes are driven by the biological ultrastructural characteristics of these skeletons and are conditioned by the presence of organic envelopes interbedded with and surrounding aragonite crystallites. These first diagenetic processes induce the development of thin fringes of fibrous aragonite cements growing syntaxially on the aragonitic coral fibers, an alteration of the incremental zonation of coral fibers and also preferential diagenetic changes in the calcification centers, including dissolution of their minute internal crystals. Diagenetic patterns observed in Pleistocene coral colonies typically involve the same processes already recognized in the older skeletal parts of living colonies, suggesting that diagenesis occurs through continuous processes instead of clearly differentiated stages. Selective dissolution affects calcification centers and some growth increments of coral fibers. Alteration of the initial transverse zonation of coral fibers also occur through the development of micro-inclusions clearly seen in ultra-thin sections. Although usually thicker than those observed in the ancient skeletal parts of living colonies, syntaxial aragonite cements commonly occur in these fossil skeletons. These cements are often associated with gradual textural modifications of the underlying coral fibers, in particular the loss of the transverse micron-scale zonation. This suggests that the coral skeleton forming the substratum of diagenetic cements is progressively recrystallized in secondary aragonite. This recrystallization of coral aragonite begins at the external margin of the skeleton, just below the diagenetic cements and gradually moves towards the internal skeletal parts. Recrystallization takes place through concomitant fine-scale dissolution-precipitation processes and occurs with textural changes but no mineralogical change. The process of recrystallization is likely initiated by a biological degradation of organic skeletal matrices and can be also driven by thermodynamical constraints involving the lowering of surface free energies resulting from changes in crystal size. Alteration of skeletal organic matrix, textural changes in coral biocrystals through recrystallization and precipitation of secondary diagenetic aragonite may bias the original geochemical characteristics of coral skeletons. Although more work is needed to establish the influence of these early diagenetic processes on the geochemical signatures, it is already well known that the breakdown of organic skeletal envelopes and early recrystallization of shallow-water carbonates alter the stable isotopic composition. The widespread use of coral skeletons as environmental and climatic proxies makes strongly necessary a better understanding of these early diagenetic mechanisms and a precise characterization of the fine-scale diagenetic patterns of specimens for the optimization of geochemical interpretations. In particular, it cannot be assumed that an entire aragonitic composition can guarantee that there is no or slight diagenetic alteration.

Abstract. Aragonite, which is the polymorph of CaCO3 precipitated by modern corals during skeletal formation, has a higher solubility than the more stable polymorph calcite. This higher solubility may leave animals that produce aragonitic skeletons more vulnerable to anthropogenic ocean acidification. It is therefore important to determine whether scleractinian corals have the plasticity to adapt and produce calcite in their skeletons in response to changing environmental conditions. Both high pCO2 and lower Mg ∕ Ca ratios in seawater are thought to have driven changes in the skeletal mineralogy of major marine calcifiers in the past ∼ 540 Ma. Experimentally reduced Mg ∕ Ca ratios in ambient seawater have been shown to induce some calcite precipitation in both adult and newly settled modern corals; however, the impact of high pCO2 on the mineralogy of recruits is unknown. Here we determined the skeletal mineralogy of 1-month-old Acropora spicifera coral recruits grown under high temperature (+3 °C) and pCO2 (∼ 900 µatm) conditions, using X-ray diffraction and Raman spectroscopy. We found that newly settled coral recruits produced entirely aragonitic skeletons regardless of the treatment. Our results show that elevated pCO2 alone is unlikely to drive changes in the skeletal mineralogy of young corals. Not having an ability to switch from aragonite to calcite precipitation may leave corals and ultimately coral reef ecosystems more susceptible to predicted ocean acidification. An important area for prospective research would be the investigation of the combined impact of high pCO2 and reduced Mg ∕ Ca ratio on coral skeletal mineralogy.

Abstract. Aragonite, which is the polymorph of CaCO3 precipitated by modern corals during skeletal formation, has a higher solubility than the more stable polymorph calcite. This higher solubility leaves animals that produce aragonitic skeletons more vulnerable to anthropogenic ocean acidification. It is therefore, important to determine whether scleractinian corals have the plasticity to adapt and produce calcite in their skeletons in response to changing environmental conditions. Both high pCO2 and lower Mg / Ca ratios in seawater are thought to have driven changes in the skeletal mineralogy of major marine calcifiers in the past ∼540 myr. Experimentally reduced Mg / Ca ratios in ambient seawater have been shown to induce some calcite precipitation in both adult and newly settled modern corals, however, the impact of high pCO2 on the mineralogy of recruits is unknown. Here we determined the skeletal mineralogy of one-month old Acropora spicifera coral recruits grown under high temperature (+3 °C) and pCO2 (∼900 μatm) conditions, using X-ray diffraction and Raman spectroscopy. We found that newly settled coral recruits produced entirely aragonitic skeletons regardless of the treatment. Our results show that elevated pCO2 alone is unlikely to drive changes in the skeletal mineralogy of young corals. Not having an ability to switch from aragonite to calcite precipitation may leave corals and ultimately coral reef ecosystems more susceptible to predicted ocean acidification. An important area for prospective research would be to investigate the combined impact of high pCO2 and reduced Mg / Ca ratio on coral skeletal mineralogy.

Although coral skeletons generally comprise aragonite crystals, changes in the molar Mg/Ca ratio (mMg/Ca) in seawater result in the incorporation of calcite crystals. The formation mechanism of aragonite and calcite crystals in the scleractinian coral Acropora tenuis was therefore investigated by RNA-seq analysis, using early growth stage calcite (mMg/Ca = 0.5) and aragonite (mMg/Ca = 5.2)-based corals. As a result, 1,287 genes were up-regulated and 748 down-regulated in calcite-based corals. In particular, sixty-eight skeletogenesis-related genes, such as ectin, galaxin, and skeletal aspartic acid-rich protein, were detected as up-regulated, and six genes, such as uncharacterized skeletal organic matrix protein 5, down-regulated, in low-Mg/Ca conditions. Since the number of down-regulated genes associated with the skeletal organic matrix of aragonite skeletons was much lower than that of up-regulated genes, it is thought that corals actively initiate construction of an aragonite skeleton by the skeletal organic matrix in low-Mg/Ca conditions. In addition, different types of skeletal organic matrix proteins, extracellular matrix proteins and calcium ion binding proteins appeared to change their expression in both calcite-formed and normal corals, suggesting that the composition of these proteins could be a key factor in the selective formation of aragonite or calcite CaCO3.

Biomaterials, especially when coated with adhesive polymers, are a key tool for restorative medicine, being biocompatible and supportive for cell adherence, growth, and function. Aragonite skeletons of corals are biomaterials that support survival and growth of a range of cell types, including neurons and glia. However, it is not known if this scaffold affects neural cell migration or elongation of neuronal and astrocytic processes, prerequisites for initiating repair of damage in the nervous system. To address this, hippocampal cells were aggregated into neurospheres and cultivated on aragonite skeleton of the coral Trachyphyllia geoffroyi (Coral Skeleton (CS)), on naturally occurring aragonite (Geological Aragonite (GA)), and on glass, all pre-coated with the oligomer poly-D-lysine (PDL). The two aragonite matrices promoted equally strong cell migration (4.8 and 4.3-fold above glass-PDL, respectively) and axonal sprouting (1.96 and 1.95-fold above glass-PDL, respectively). However, CS-PDL had a stronger effect than GA-PDL on the promotion of astrocytic processes elongation (1.7 vs. 1.2-fold above glass-PDL, respectively) and expression of the glial fibrillary acidic protein (3.8 vs. and 1.8-fold above glass-PDL, respectively). These differences are likely to emerge from a reaction of astrocytes to the degree of roughness of the surface of the scaffold, which is higher on CS than on GA. Hence, CS-PDL and GA-PDL are scaffolds of strong capacity to derive neural cell movements and growth required for regeneration, while controlling the extent of astrocytic involvement. As such, implants of PDL-aragonites have significant potential as tools for damage repair and the reduction of scar formation in the brain following trauma or disease.

Abstract Corals are the ecosystem engineers of coral reefs, one of the most biodiverse marine ecosystems. The ability of corals to form reefs depends on the precipitation of calcium carbonate (CaCO3) under biological control. However, several mechanisms underlying coral biomineralization remain elusive, for example, whether corals employ different molecular machineries to deposit different CaCO3 polymorphs (i.e., aragonite or calcite). Here, we used tandem mass spectrometry (MS/MS) to compare the proteins occluded in the skeleton of three octocoral and one scleractinian species: Tubipora musica and Sinularia cf. cruciata (calcite sclerites), the blue coral Heliopora coerulea (aragonitic skeleton), and the scleractinian aragonitic Montipora digitata. Reciprocal Blast analysis revealed extremely low overlap between aragonitic and calcitic species, while a core set of proteins is shared between octocorals producing calcite sclerites. However, the carbonic anhydrase CruCA4 is present in the skeletons of both polymorphs. Phylogenetic analysis highlighted several possible instances of protein co-option in octocorals. These include acidic proteins and scleritin, which appear to have been secondarily recruited for calcification and likely derive from proteins playing different functions. Similarities between octocorals and scleractinians included presence of a galaxin-related protein, carbonic anhydrases, and one hephaestin-like protein. Although the first two appear to have been independently recruited, the third appear to share a common origin. This work represents the first attempt to identify and compare proteins associated with coral skeleton polymorph diversity, providing several new research targets and enabling both future functional and evolutionary studies aimed at elucidating the origin and evolution of coral biomineralization.

The structural phase transition from aragonite to calcite in biogenic samples extracted from the skeletons of selected scleractinian corals has been studied by synchrotron radiation diffraction. Biogenic aragonite samples were extracteden blocwithout pulverization from two ecologically different scleractinian taxa:Desmophyllum(deep-water, solitary and azooxanthellate) andFavia(shallow-water, colonial, zooxanthellate). It was found that natural (not pulverized) samples contribute to narrow Bragg peaks with Δd/dvalues as low as 1 × 10−3, which allows the exploitation of the high resolution of synchrotron radiation diffraction. A precise determination of the lattice parameters of biogenic scleractinian coral aragonite shows the same type of changes of thea,b,clattice parameter ratios as that reported for aragonite extracted from other invertebrates [Pokroy, Quintana, Caspi, Berner & Zolotoyabko (2004).Nat. Mater.3, 900–902]. It is believed that the crystal structure of biogenic samples is influenced by interactions with organic molecules that are initially present in the biomineralization hydrogel. The calcite phase obtained by annealing the coral samples has a considerably different unit-cell volume and lattice parameter ratioc/aas compared with reference geological calcite and annealed synthetic aragonite. The internal strain in the calcite structure obtained by thermal annealing of the biomineral samples is about two times larger than that found in the natural aragonite structure. This effect is observed despite slow heating and cooling of the sample.

Thesis (Ph. D.)--Joint Program in Oceanography/Applied Ocean Science and Engineering (Massachusetts Institute of Technology, Dept. of Earth, Atmospheric, and Planetary Sciences; and the Woods Hole Oceanographic Institution), 2013.<br>Cataloged from PDF version of thesis.<br>Includes bibliographical references.<br>Predicting the response of net community calcification (NCC) to ocean acidification OA and declining aragonite saturation state [Omega]a requires a thorough understanding of controls on NCC. The diurnal control of light and net community production (NCP) on NCC confounds the underlying control of [Omega]a on NCC and must be averaged out in order to predict the general response of NCC to OA. I did this by generating a general NCC-[Omega]a correlation based on data from 15 field and mesocosm studies around the globe. The general relationship agrees well with results from mesocosm experiments. This general relationship implies that NCC will transition from net calcification to net dissolution at a [Omega]a of 1.0 ± 0.6 and predicts that NCC will decline by 50% from 1880 to 2100, for a reef of any percent calcifier cover and short reef water residence time. NCC will also decline if percent calcifier cover declines, as evidenced by estimates of NCC in two Caribbean reefs having declined by an estimated 50-90% since 1880. The general NCC-([Omega]a relationship determined here, along with changes in percent calcifier cover, will be useful in predicting changes in NCC in response to OA and for refining models of reef water [Omega]a.<br>by Whitney Nicole Bernstein.<br>Ph.D.

Biology<br>Ph.D.<br>Ocean acidification is the reduction in seawater pH due to the absorption of anthropogenic carbon dioxide by the oceans. Reductions in seawater pH can inhibit the precipitation of aragonite, a calcium carbonate mineral used by marine calcifiers such as corals. Lophelia pertusa is a cold-water coral that forms large reef structures which enhance local biodiversity on the seafloor, and is found commonly from 300-600 meters on hard substrata in the Gulf of Mexico. The present study sought to investigate the potential impacts of ocean acidification on L. pertusa in the Gulf of Mexico through combined field and laboratory analyses. A field component characterized the carbonate chemistry of L. pertusa habitats in the Gulf of Mexico, an important step in establishing a baseline from which future changes in seawater pH can be measured, in addition to collecting in situ data for the design and execution of perturbation experiments in the laboratory. A series of recirculating aquaria were designed and constructed for the present study, and support the maintenance and experimentation of live L. pertusa in the laboratory. Finally, experiments testing L. pertusa's mortality and growth responses to ocean acidification were conducted in the laboratory, which identified thresholds for calcification and a range of sensitivities to ocean acidification by individual genotype. The results of this study permit the monitoring of ongoing ocean acidification in the deep Gulf of Mexico, and show that ocean acidfication's impacts may not be consistent across individuals within populations of L. pertusa.<br>Temple University--Theses

Biology<br>Ph.D.<br>Deep-water or cold-water corals are abundant and highly diverse, greatly increase habitat heterogeneity and species richness, thereby forming one of the most significant ecosystems in the deep sea. Despite this remote location, they are not removed from the different anthropogenic disturbances that commonly impact their shallow-water counterparts. The global decrease in seawater pH due to increases in atmospheric CO2 are changing the chemical properties of the seawater, decreasing the concentration of carbonate ions that are important elements for different physiological and ecological processes. Predictive models forecast a shoaling of the carbonate saturation in the water column due to OA, and suggest that cold-water corals are at high risk, since large areas of suitable habitat will experience suboptimal conditions by the end of the century. The main objective of this study was to explore the fate of the deep-water coral community in time of environmental change. To better understand the impact of climate change this study focused in two of the most important elements of deep-sea coral habitat, the reef forming coral Lophelia pertusa and the octocoral community, particularly the gorgonian Callogorgia delta. By means of controlled experiments, I examined the effects of long- and short-term exposures to seawater simulating future scenarios of ocean acidification on calcification and feeding efficiency. Finally In order to understand how the environment influences the community assembly, and ultimately how species cope with particular ecological filters, I integrated different aspects of biology such functional diversity and ecology into a more evolutionary context in the face of changing environment. My results suggest that I) deep-water corals responds negatively to future OA by lowering the calcification rates, II) not all individuals respond in the same way to OA with high intra-specific variability providing a potential for adaptation in the long-term III) there is a disruption in the balance between accretion and dissolution that in the long term can shift from net accretion to net dissolution, and IV) there is an evolutionary implication for certain morphological features in the coral community that can give an advantage under stresfull conditions. Nevertheless, the suboptimal conditions that deep-water corals will experience by the end of the century could potentially threaten their persistence, with potentially negative consequences for the future stability of this already fragile ecosystem.<br>Temple University--Theses

El análisis de estructuras paleokársticas ha atraído, en los últimos años, el interés de numerosos investigadores a la información que aportan a la geología aplicada y la paleogeomorfología. Estudios recientes se han centrado en la aplicación de técnicas de exploración del subsuelo debido a la escasez de afloramientos. En la presente Memoria se analizan íntegramente las formas de hundimiento pretéritas que afloran discontinuamente con gran detalle, en los acantilados de las costas meridional (plataforma de Llucmajor) y oriental (plataforma de Santanyí) de Mallorca, a lo largo de más de 75 km de línea de costa, afectando a las rocas carbonáticas del Mioceno superior. El estudio se ha centrado en la distribución geográfica, evolución geológica y las características geomorfológicas de estos paleocolapsos, con especial énfasis en su génesis, su relación con la arquitectura y distribución de las facies, así como en las formas y productos asociados.<br/><br/>Los paleocolapsos han sido descritos en su contexto litoestratigráfico y estructural dentro de las mencionadas plataformas carbonáticas, siendo este trabajo una contribución al conocimiento del karst en estas unidades geológicas y su relación con las fluctuaciones marinas. La karstogénesis queda reflejada en estas formas pretéritas donde se han observado depósitos y formas de disolución ligadas a la dinámica kárstica controlada, en el caso que nos ocupa, por las fluctuaciones del nivel del mar: brechas, sedimentos detríticos, cementos, así como distintos tipos y volúmenes de porosidad. La mayor parte de estas formas (sobre un total de 177), cuyas dimensiones en sección varían desde pocos metros hasta afloramientos con 28 m de altura y más de 100 m en la horizontal, se ubican en la plataforma de Santanyí a excepción de dos estructuras ubicadas en la plataforma de Llucmajor.<br/><br/>El análisis geológico y su relación con los paleocolapsos muestra como en la plataforma de Llucmajor éstos afectan a las facies de la Unidad Complejo Arrecifal (facies de back reef y frente arrecifal). Sin embargo, en la plataforma de Santanyí, los paleocolapsos afectan tanto a parte del Complejo Arrecifal (facies de back reef), como a la totalidad de la Unidad Calizas de Santanyí. A partir del estudio de la arquitectura de facies del Complejo Arrecifal en la plataforma de Llucmajor se ha establecido el modelo deposicional en la plataforma de Santanyí. Sin embargo, ésta última se encuentra compartimentada como consecuencia del control de dos fallas en dirección de orientación E-O en S'Algar y Na Magrana, donde se localiza el contacto entre facies de lagoon externo y talud arrecifal. No obstante, la cartografía y análisis de los lineamientos en dicha plataforma ha permitido identificar dos familias principales con dos direcciones dominantes; NE-SO y NO-SE, siendo la dirección E-O menos representativa. Se han observado fracturas distensivas y pequeñas fallas inversas miocenas asociadas al proceso de colapso, así como fracturas y fallas postmiocenas, y fracturas cuaternarias.<br/><br/>El estudio de la geometría en sección de los paleocolapsos pone de relieve que la formas en "V", "U" y conoidales son las más comunes. Han sido identificadas dos partes diferentes en un paleocolapso tipo: una inferior donde se observa la paleocavidad ubicada en la base del paleocolapso (lagoon externo y/o frente arrecifal), con una geometría irregular de dimensiones entre 1 m y 9 m rellena por sedimentos adyacentes y suprayacentes a ésta; y una parte superior, coincidente con los bordes de la estructura (lagoon interno/Calizas de Santanyí) buzando con inflexión conoidal hacia la paleocavidad.<br/><br/>Se han identificado cuatro tipos de brechas (crackle, crackle-laminae-split, de mosaico y caótica) en las estructuras de paleocolapso asociadas cada una de ellas a distintos niveles estratigráficos y, en algunos paleocolapsos, con una gradación vertical y lateral. Son característicos de estos depósitos los sedimentos detríticos (matriz) y los cementos asociados (vadosos y freáticos). En general, el cemento domina sobre la matriz en la zona inferior del paleocolapso, mientras que por encima, es la matriz la que domina sobre el cemento. El análisis por difracción de Rayos X de la matriz indica para la muestra total que la calcita es el mineral principal y el cuarzo el mineral secundario. En la fracción arcilla, la moscovita, la illita y la caolinita son los minerales más comunes. De ello, junto con el estudio de láminas delgadas en estos depósitos, donde se han observado tamaños de grano en el cuarzo superior a 2 mm, se deduce un ambiente de sedimentación subsuperfical y otro subaéreo de lo que se extrae un origen, proceso de transporte y sedimentación diversos, así como la evolución cristaloquímica en determinados minerales. Los cementos son de naturaleza calcítica, con contenidos relativamente altos en magnesio para los freáticos y bajos para los vadosos. Para el estudio de la porosidad en los paleocolapsos se ha procedido a su clasificación en dos tipos principales, interclasto e intraclasto, a partir de las cuales se ha estudiado la macro y microporosidad. La brecha caótica de colapso es la que presenta volúmenes de porosidad más elevados y tipologías diversas. <br/><br/>El análisis de isótopos estables muestra una gran homogeneidad entre la composición isotópica de los cementos, con valores en &#948;18O y &#948;13C ligeros, lo que indica condiciones análogas de precipitación, con dominio de aguas dulces sobre las saladas. Tanto la marca del oxígeno como del carbono parecen indicar que los cementos se depositaron en un período interglaciar coincidente con algún estadio isotópico impar.<br/><br/>El estudio de la arquitectura de facies de la plataforma de Llucmajor ha permitido elaborar un modelo genético de ocurrencia para los paleocolapsos y su ubicación espacio-temporal. Dicho modelo, ha sido corroborado por la relación entre la distribución de facies y paleocolapsos en la plataforma de Santanyí, por la observación en algunos paleocolapsos de sedimentos a techo de la Unidad Calizas de Santanyí que sellan la estructura, así como por el tipo de brechas características de colapsos sinsedimentarios (brecha crackle-laminae-split), que muestran una deformación dúctil de los materiales cuando éstos no estaban completamente consolidados, dando lugar a formas laxas de bajo ángulo. Los procesos genéticos que dieron lugar a los paleocolapsos kársticos están directamente relacionados con la alta frecuencia de fluctuación del nivel del mar durante el Mioceno superior, la misma que controló la arquitectura de facies y la posición del nivel freático. Las oscilaciones del nivel freático causaron la alternancia de dominios freáticos y vadosos así como, de agua dulce y agua salada en la interfase, provocando la disolución de los parches coralinos y el posterior hundimiento del techo de las cavidades. <br/><br/>El estudio integral de todos estos aspectos junto con el análisis de una red de paleocauces y una playa fósil, ha permitido realizar una reconstrucción paleogeográfica desde el Messiniense en la plataforma de Santanyí e identificar estructuras de paleocolapso postmiocenas y cuaternarias. Con estos datos se ha procedido a la comparación de los paleocolapsos kársticos con otras estructuras similares en el País Vasco y Las Islas de Malta, de lo que se extraen analogías y diferencias, determinadas fundamentalmente por el orden de fluctuación del nivel del mar. <br/><br/>Por último, se discute el papel de los paleocolapsos kársticos como elementos que contribuyen en cierta medida a la ocurrencia de hidrocarburos en plataformas carbonáticas, pudiendo ser excelentes reservorios debido al gran número de afloramientos, el volumen de roca afectada y a su elevada porosidad y permeabilidad.<br>Paleokarst tend to differ from studies of recent and modern karst landforms though is important the genetic understanding of the karst processes for analysis a paleokarst structure. Paleokarst systems form an important class of carbonate record and they have a pronounced lateral and vertical spatial complexity that results from a complex history of formation. Most of the known karst systems are epigenetic and they are the result of near-surface karst processes during periods of subaerial exposure and latter burial compaction and diagénesis. Scale, porosity types and spatial complexities of these paleokarst systems depends on the carbonate rock solubility, paleoclimatic conditions, lowering of base level either by tectonic uplift or sea-level fall and time of subaerial exposure. Uplift, in addition, commonly induces fracturing and faulting that further control karst development. Ascertaining and predicting paleokarstic heterogeneities within carbonate rocks are strategic to fluids field development and optimum production. With current subsurface methods, however, most of the smaller-scale stratigraphic architecture and diagenetic facies are difficult to define. Predictive models for exploration and development are best made from outcrop studies of well-exposed examples. Accuracy for prediction of these models depends on the detailed understanding of the genetic factors controlling their geometries, scale, pore networks and spatial complexities of these potential karstic store. Miocene carbonates (Upper Tortonian-Lower Messinian) in Mallorca Island are composed of reefal (Reef Complex) and shallow water carbonates (Santanyí Limestone) that prograded across platforms surrounding paleoislands. The contact between the Reef Complex and the Santanyí Limestone is a subaerial erosion surface with paleokarst features. The shallow-water carbonates beds both the lagoonal beds of the Reef Complex and basal beds of the Santanyí Limestone, are affected by paleocollapse structures produced by roof collapse of caverns developed in the underlying Reefal Complex. These paleocollapse structures affecting to the carbonate platform allows to propose a genetic model to explain the origin of these paleosink, that are related to early diagenetic processes induced by high-frequency sea-level fluctuations, the same sea-level fluctuations that controlled the facies architecture of the carbonate platforms.<br/><br/>Cartography and study of lineaments and fractures on Santanyí Platform have permitted identified two principals groups with two main directions: NE-SO and NO-SE. Have been observed distensiva fractures and Miocene small inverse faults related with de breackdwon phenomena. Moreover, postmiocenes and quaternary faults and fractures have been recognized.<br/><br/>The geometry of paleocollapse structures is commonly (in section) as "V", "U" or funnel. The size is variable from few meters of long to thousands meters, and few meters of weigh to thirteen meters. Breccias has been classified as crackle, crackle-laminae-split, mosaic and chaotic types. Chaotic breccias grade from matrix-free, clasts-supported breccias to matrix-supported breccias. The matrix mineralogy is compose in the total sample for calcite in the major part and quartz in less quantity. However, same structures present quartz as principal mineral. To the clay fraction, caolinite, illite and moscovite are the most general mineral present.<br/><br/>The geochimical sediment (carbonate) are filling a part of interclaste breccias porosity. This is commonly phreatic speleothems. Isotopic studies of this sediments show &#948;18O and &#948;13C contents negatives. This fact could indicate a fresh water environment deposition

Carbonate minerals play a very important role in nature, they represent some of the most diverse and common mineral species on the Planet. They are directly involved in the carbon dioxide (CO2) cycle acting as relatively stable long term chemical storage reservoirs, moderating both global warming trends and oceanaquatic chemistry through carbonate buffering systems. A range of synthetic metal carbonates have been synthesised for analysis under multiple experimental conditions, in order to study the variation in physical and chemical properties such as phase specificity, metal substitution, hydration/hydroxy carbonate formation under varying partial pressures of CO2 and thermal stability. Synthetic samples were characterised by a variety of instrumental analysis techniques in order to investigate chemical purity and phase specificity. Some of the techniques included, vibrational spectroscopy (IR/Raman), thermal analysis (TGA-MS) (thermal Raman), X-Ray diffraction (XRD) and electron microscopy (SEM-EDX). From the instrumental characterisation techniques, it was found that single phase smithsonite, hydrozincite, calcite and nesquehonite could successfully be synthesised under the conditions used. Minor impurities of other minerals and / or phases were found to form under specific chemical or physical conditions such as in the case of hydrozincite / simonkolleite if zinc chloride was used during hydrothermal synthesis.

Ce travail concerne l'évolution au cours du temps d'un système carbonaté sous l'effet de phénomènes de transport et de processus chimiques. La diagenèse carbonatée étudiée ici est la calcitisation, i.e., la transformation en calcite de l'aragonite constituant le squelette des coraux du genre Porites. En effet, le corail, qui sécrète son squelette en environnement marin peut subir au cours de son histoire une évolution au milieu sub-aérien suite à l'émersion du récif. Le squelette aragonitique alors confiné dans les lentilles d'eau douce, caractéristiques des aquifères coralliens, devient métastable et peut, à terme, être totalement calcitisé.<br />La compréhension de ces phénomènes est appréhendée par une approche pluridisciplinaire qui relève à la fois de la géologie (1) et de la physique des milieux poreux (2).<br />1. Géologie - Différents stades de calcitisation sont investigués sur des coraux fossiles datés de l'Holocène et du Pléistocène échantillonnés sur les terrasses soulevées de Nouvelle-Calédonie, Vanuatu et Wallis et Futuna (Pacifique Sud-Ouest). Les produits de la diagenèse sont observés et caractérisés par différentes techniques d'analyses (Diffraction de Rayons X, microscopie optique, imagerie de cathodoluminescence, spectroscopie Raman, Microscopie Electronique à Balayage, microsonde électronique...) pour argumenter l'origine de la calcite néoformée et identifier les processus mis en jeu, notamment l'implication ou non d'une étape de transport. <br />2. Physique des milieux poreux - Les données expérimentales révèlent l'existence d'hétérogénéités structurales à l'échelle de la lame mince. Pour expliquer ces hétérogénéités, on développe, à l'échelle microscopique, un modèle de transport réactif multicomposant incluant les processus représentatifs de la diagenèse du corail (diffusion de type traceur, migration, adsorption/désorption, réactions cinétiques et /ou à l'équilibre). Des simulations numériques préliminaires 1D sont présentées et discutées pour évaluer l'importance relative des phénomènes intervenant dans la précipitation de la calcite. Ce type de simulations numériques peut servir de point de départ à une procédure de changement d'échelles, permettant d'intégrer des paramètres supplémentaires (notamment plusieurs échelles de descriptions...). Ceci est illustré à l'aide de la prise de moyenne volumique, dans le cas d'un échantillon 3D de Porites subissant un processus de transport réactif fortement idéalisé.

A monthly resolved coral δ18O record from Sabine Bank, Vanuatu (SBV; 166.04° E, 15.94°S), extending from 2006 to 1929 CE, is used to assess the influence of sea surface salinity (SSS) on the oxygen isotopic composition of coral aragonite at this location. Monthly SSS anomalies at SBV between 2006 and 1970 are strongly correlated with monthly anomalies in sea surface temperature (SST) variations in the central Pacific cold tongue, as recorded by SST anomalies in the Niño 3.4 grid box (i.e., canonical record of ENSO variability, r = 0.68, p < 0.01; lag of 6 months). This relationship demonstrates that SSS in the waters offshore of Vanuatu respond to ENSO-driven changes in the coupled ocean-atmosphere system in the tropical Pacific. SBV coral δ18O is also strongly correlated with monthly instrumental SSS anomalies at Vanuatu (r = 0.71, p < 0.01), therefore SBV coral δ18O variations are driven by the ENSO-related changes in surface ocean conditions. A calibration-verification exercise using SBV coral δ18O values and instrumental SSS was performed over the period 2006-1970 CE. A statistically robust transfer function was determined and used to predict SSS at SBV back to 1929 CE. The coral δ18O and SSS relationship at Vanuatu is further evaluated via comparison with a coral δ18O record from Malo Channel, Vanuatu, a site that is 130 km to the east of SBV. The strong correlation between the two coral δ18O records (r = 0.70; p < 0.01) suggests that ENSO drives regional changes in SSS in this region and that such changes can be reconstructed using variations in skeletal δ18O of corals.<br>text

The development of coral reefs is largely restricted to areas within the tropics where favourable conditions for both coral and reef growth prevail. There is, however, a continuum from these typical, accretive reefs in the tropics to marginal, non-accretive, coral-dominated reef communities which occur at higher latitudes. High-latitude reefs function similarly in many regards to their tropical counterparts and are regulated by similar processes to a varying degree. In this study, the major biological and physico-chemical processes were assessed which directly or indirectly prevent the continued persistence of reefal frameworks and thus hinder reef accretion on high-latitude reefs in the iSimangaliso Wetland Park. These reefs have a high diversity of hard and soft corals with significant reef coverage, yet little evidence of any biogenic accretion has been observed. The scleractinian coral, Acropora austera, is one of the few corals which may be responsible for reef framework production. It exhibits a gregarious growth pattern, forming large, monospecific stands with an interlocking framework characteristic of the early stages of reef accretion. The framebuilding potential of A. austera and the continued persistence of such frameworks were thus determined by in situ monitoring of coral growth, mortality, bioerosion and several physico-chemical parameters. Growth rate and mortality of A. austera branches were measured at three sites of differing stand size and apparent age. This was achieved by repeated image analysis and by staining branches with the vital stain, Alizarin Red S. Both measures of growth yielded a similar linear extension rate of 24.5 mm/yr (n = 467), comparable to related species at similar latitudes. Mean branch mortality was as high as 50%, with clear differences manifested between each A. austera stand. Branch extension rates and branch mortality were inversely related between sites. Small, young stands exhibited significantly faster coral growth rates, lower mortality and a net increase in overall branch length over the study period, whilst the opposite was true of larger, more developed stands. In addition, bioerosion was determined at each site to assess its potential for carbonate removal and its destabilizing effect on reef frameworks. Bioerosion intensity was recorded as “percentage area damage” within cross-sections and “frequency of occurrence” of bioeroding organisms in coral rubble fragments (n = 120). The level of bioerosion was found to be substantial (up to 11.5% loss in weight of coral fragments over the 12-month study period) and was found to decrease significantly with a reduction in size of each A. austera stand. Aragonite saturation state is considered a major factor that limits the geographical range of coral reefs globally. Although previously thought to be limiting in Maputaland, mean ΩArag values of 4.40±0.29 were measured on the reefs in summer and 4.33±0.21 in winter and thus would not have limited reef development. Past studies have noted the turbulence on South African east coast reefs and its adverse effect on reef development. This was corroborated in this study with the measurement of considerable sediment re-suspension (0.17 g cm⁻² day⁻¹) and regular damage to both living coral and the reef framework caused by large swells. These results lead to the theory that Acropora austera stands senesce with increasing size and age. Although large coral frameworks are found on the Maputaland reefs, they do not persist in the long term. High rates of sediment re-suspension prevent infilling of the interstitial spaces and eventual cementation, while high levels of bioerosion lead to framework instability over time. Rough seas further hamper accretion by physical removal of both living coral and the coral-derived framework, thus removing recent growth. This process is suspected to cause an imbalance in the carbonate budget of these marginal reefs, ultimately favoring carbonate removal over carbonate deposition.<br>Thesis (M.Sc.)-University of KwaZulu-Natal, Westville, 2011.

Coral reefs are largely restricted to shallow tropical seas, where water is warm, nutrient poor and well illuminated for photosynthesis and where sufficient calcium carbonate (aragonite) exists in seawater for the precipitation of coral skeletons (i.e. calcification). Extreme temperatures and salinities cause thermal and osmotic stress, while large amounts of sediment smother corals and block light. High concentrations of nutrients encourage algal growth at the expense of corals, while low seawater aragonite concentrations prevent net accretion of the reef framework. At local scales, the hydrodynamic regime influences reef growth, as corals are damaged by storms and wave surge. The typical abiotic environment in which reefs are found, and which determines reef distribution, is defined. The chapter also discusses marginal reefs, where corals live at the margins of their survival, for example in the warm, salty seas of the Persian Gulf and the relatively cold waters of Australia’s Lord Howe Island.

Coral reefs are tropical ecosystems but show global patterns. The Caribbean has about 60 reef-building coral species, while Southeast Asia has nearly 1,000, this number broadly diminishing with distance east and west from the Southeast Asian region. Diversity of corals also diminishes broadly with distance north and south of the equator. While basic patterns exist, there are several kinds of reef in the same sense that there are different kinds of forests, sometimes forming near-monocultures, sometimes with more diverse mixtures of species. Their key to success is that they house vast numbers of captive dinoflagellates that photosynthesize in a close symbiosis, which explains how these complex ecosystems persist in the absence of substantial fields of large, visible seaweeds. All deposit limestone in its aragonite form, in a way characteristic to each species, which has been used for distinguishing between species. The basic unit of a coral, the polyp, reproduces sexually, but more importantly by asexual budding, which allows for the growth of large colonies of polyps, all clones. Numerous other organisms have crucial associations with the coral polyp: bacteria and archaea especially, the whole forming what is now termed the coral holobiont. Aside from photosynthesis, corals have nematocysts in their tentacles to capture zooplankton food. Corals compete for space using these stinging cells also, amongst other methods. On any reef, soft corals are numerous, especially in the Caribbean, though these do not deposit limestone rock. Calcareous algae are crucial reef-building components too, particularly in the shallows.

The phylum Cnidaria or Coelenterates includes sea anemones, jellyfish, hydras, sea fans, and, of course, the corals. With few exceptions they are all marine organisms and most are inhabitants of shallow water. In spite of the great variation in shape, size, and mode of life, they all possess the same basic metazoan structural features: an internal space for digestion (gastrovascular cavity or coelenteran), a mouth, and a circle of tentacles, which are really just an extension of the body wall. The body wall in turn is composed of three layers: an outer layer of epidermis, an inner layer of cells lining the gastrovascular cavity, and, sandwiched between them, a so-called mesoglea (Barnes 1980). All these features are present in both of the basic structural types: the sessile polyp and the free-swiming medusa. During their life cycle, some cnidarians exhibit one or the other structural type whereas others pass through both. Most Cnidaria have no mineralized deposits. The ones that, to date, are known to have mineralized deposits are listed in Table 5.1. They are found in both the free-swimming medusae and the sessile polyps. Not surprisingly, these have very different types of mineralized deposits. In the medusae they are located exclusively within the statocyst where they constitute an important part of the organism’s gravity perception apparatus. Interestingly the statoconia of the Hydrozoa, examined to date for their major elemental compositions only, are all composed of amorphous Mg-Ca-phosphate, whereas those of the Scyphozoa and Cubozoa are composed of calcium sulfate. Calcium sulfate minerals (presumably gypsum) are not commonly formed by organisms and the only other known occurrence is in the Gamophyta among the Protoctista. Spangenberg (1976) and her colleagues have expertly documented this phenomenon in the Cnidaria. (For a more detailed discussion of mineralization and gravity perception see Chapter 11.) The predominant mineralized hard part associated with the sessile polyps is skeletal. These can take the form of skeletons composed of individual spicules, spicule aggregates, or massive skeletons. They are composed of aragonite, calcite, or both.