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Dissertations / Theses on the topic 'Crosslinking mass spectrometry'

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1

Taverner, Thomas. "Protein complex architecture from mass spectrometry, crosslinking and informatics." Thesis, University of Cambridge, 2007. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.612836.

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2

Mak, Esther W. M. "Using Chemical Crosslinking and Mass Spectrometry for Protein Model Validation and Fold Recognition." Thesis, University of Waterloo, 2006. http://hdl.handle.net/10012/1228.

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The 3D structures of proteins may provide important clues to their functions and roles in complex biological pathways. Traditional methods such as X-ray crystallography and NMR are not feasible for all proteins, while theoretical models are typically not validated by experimental data. This project investigates the use of chemical crosslinkers as an experimental means of validating these models. Five target proteins were successfully purified from yeast whole cell extract: Transketolase (TKL1), inorganic pyrophosphatase (IPP1), amidotransferase/cyclase HIS7, phosphoglycerate kinase (PGK
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3

Braun, Craig Ronald. "Structural Characterization of BCL-2 Family Protein Interactions Using Photoreactive Stapled Peptides and Mass Spectrometry." Thesis, Harvard University, 2012. http://dissertations.umi.com/gsas.harvard:10139.

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Recent improvements in mass spectrometry instrumentation have stimulated the fusion of this technology with protein crosslinking to advance the structural proteomics field. However, analysis of complex datasets from crosslinking experiments remains a bottleneck. The majority of crosslinking studies for structural characterization of protein- protein interactions have been conducted with reagents specific for discrete amino acids. While this approach simplifies data analysis, the requirement for specific functionalities to be present at the interaction interface limits resolution. Herein, we re
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4

DAI, ZHENYU. "PROTEIN CROSSLINKING BY THE MAILLARD REACTION WITH ASCORBIC ACID AND GLUCOSE." Case Western Reserve University School of Graduate Studies / OhioLINK, 2007. http://rave.ohiolink.edu/etdc/view?acc_num=case1184176746.

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5

Müller, Fränze [Verfasser], Juri [Akademischer Betreuer] Rappsilber, Juri [Gutachter] Rappsilber, and Markus [Gutachter] Ralser. "Quantitative crosslinking mass spectrometry : development and application to protein conformation changes / Fränze Müller ; Gutachter: Juri Rappsilber, Markus Ralser ; Betreuer: Juri Rappsilber." Berlin : Technische Universität Berlin, 2020. http://d-nb.info/1213348498/34.

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6

Giese, Sven Hans-Joachim [Verfasser], Juri [Akademischer Betreuer] Rappsilber, Matthias [Gutachter] Selbach, and Juri [Gutachter] Rappsilber. "Computational methods and machine learning for crosslinking mass spectrometry data analysis / Sven Hans-Joachim Giese ; Gutachter: Matthias Selbach, Juri Rappsilber ; Betreuer: Juri Rappsilber." Berlin : Technische Universität Berlin, 2021. http://d-nb.info/1238140718/34.

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7

Ferrari, Állan Jhonathan Ramos 1991. "Caracterização estrutural da Stanniocalcina-1 por Proteômica Estrutural." [s.n.], 2015. http://repositorio.unicamp.br/jspui/handle/REPOSIP/250217.

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Orientador: Fábio Cesar Gozzo<br>Dissertação (mestrado) - Universidade Estadual de Campinas, Instituto de Química<br>Made available in DSpace on 2018-08-27T10:34:23Z (GMT). No. of bitstreams: 1 Ferrari_AllanJhonathanRamos_M.pdf: 2074796 bytes, checksum: a9fd65df7da4d527a33e2ef562c91f73 (MD5) Previous issue date: 2015<br>Resumo: A Stanniocalcina-1 (STC1) é um hormônio glicoproteico que apresenta padrão de expressão diferencial destacado em diversas patologias, notadamente em neoplasias, mas seus aspectos funcionais e estruturais são pouco explorados até o momento. Nesse sentido, a STC1 foi es
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8

Garcia, del Rio Diego Fernando. "Studying protein complexes for assessing the function of ghost proteins (Ghost in the Cell)." Electronic Thesis or Diss., Université de Lille (2022-....), 2023. https://pepite-depot.univ-lille.fr/ToutIDP/EDBSL/2023/2023ULILS115.pdf.

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Le cancer de l'ovaire (OvCa) est le cancer le plus mortel parmi les cancers féminins. Il est souvent diagnostiqué tardivement ou mal diagnostiqué, ce qui le rend difficile à traiter. Les options de traitement incluent la chirurgie ou la chimiothérapie, toutefois la résistance à la chimiothérapie est un problème majeur. Il est donc urgent de trouver de nouvelles cibles et de développer de nouvelles stratégies pour surmonter cette résistance.Dans ce contexte le protéome fantôme est une source potentiellement riche de biomarqueurs. Le protéome fantôme, ou protéome alternatif, est composé de proté
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9

Gafken, Philip R. "Characterization of UV-crosslinked protein-nucleic acid interfaces by Maldi MS and ESI MS/MS." Thesis, 2000. http://hdl.handle.net/1957/32805.

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10

Jensen, Ole Norregaard. "Characterization of photochemically cross-linked protein-nucleic acid complexes by mass spectrometry." Thesis, 1994. http://hdl.handle.net/1957/35130.

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A novel protocol for the study of protein-nucleic acid interactions is presented and demonstrated to be feasible. The protocol combines photochemical crosslinking techniques and mass spectrometric methods into a new strategy for identifying protein domains or amino acid residues that are in close contact with nucleic acid in protein-nucleic acid complexes. Identifying nucleic acid binding domains in proteins provides a starting point for understanding structure-function relationships in protein-nucleic acid complexes. The protocol can be divided into three parts: 1) Cross linking of the protei
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11

Veeramachaneni, Rathna Jyothi. "Towards Structural Determination of Human α1-Glycine Receptor Allostery". 2016. http://digital.library.duq.edu/u?/etd,197204.

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Recent advances in technology have led to the determination of numerous notable structures of membrane proteins. While they provide valuable information about the structure of membrane proteins these studies often provide static images with potentially limited dynamics, and structural determination often requires truncation of flexible regions, and often utilizes bacterial homologs given the need for stable, heterologous overexpression. In order to better understand allostery at a molecular level, state-dependent crosslinking studies coupled with multidimensional mass spectrometry (MS) were co
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12

Stevens, Katherine Grace. "Mass Spectrometric Methods for the Analysis of Chemically Modified Proteins." Thesis, 2021. http://hdl.handle.net/2440/131957.

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Mass spectrometry has critical roles in analytical chemistry, biomedical research and the diagnosis and treatment of human disease. Its ability to unambiguously identify and quantify a diverse range of biomolecules, from small molecule metabolites to large intact protein complexes in complex biological matrices, has solidified this technique’s place in the clinical chemists’ laboratory. However, mass spectrometry’s wider adoption by biochemists and clinicians is hindered by the inherent volume and complexity of the data it can generate from a biological context, and the subsequent level of spe
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13

Weerasekera, Rasanjala Kumari. "The Development of Novel Protein Topology Mapping Strategies using Crosslinking, Cyanogen Bromide Cleavage, and Mass Spectrometry." Thesis, 2011. http://hdl.handle.net/1807/31969.

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Advances in protein topology mapping methods are urgently needed to complement the wealth of interactome data that is presently being generated at a rapid pace. Chemical crosslinking followed by mass spectrometry (MS) has evolved over the last decade as an attractive method for protein topology and interface mapping, and holds great promise as a counterpart to modern interactome studies in the field of proteomics. Furthermore, stabilization of proteins and protein complexes with crosslinking offers many advantages over high-resolution structural mapping methods, including the ability to study
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14

Soderblom, Erik James. "Collision-induced dissociative crosslinking reagents and methodology for the structural analysis of proteins and protein-protein interactions using tandem mass spectrometry." 2008. http://www.lib.ncsu.edu/theses/available/etd-10202008-142218/unrestricted/etd.pdf.

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15

Opitz, Nadine. "Analysis of the Asc1p/RACK1 microenvironment in Saccharomyces cerevisiae using proximity-dependent Biotin Identification (BioID) and high-resolution mass spectrometry." Doctoral thesis, 2016. http://hdl.handle.net/11858/00-1735-0000-0023-3F29-D.

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16

Rall, Nils Arne. "A Method for the Quantitative Analysis of Protein-Protein Interactions In Vivo." Doctoral thesis, 2016. http://hdl.handle.net/11858/00-1735-0000-0028-872D-1.

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17

Nguyen, Quynh Vy. "Développement d'un microréacteur à base d'enzyme protéolytique réticulée avec le glutaraldéhyde pour la cartographie peptidique." Thèse, 2008. http://hdl.handle.net/1866/7830.

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18

Doneanu, Catalin E. "Mass spectrometric analysis of UV-crosslinked protein-nucleic acid complexes." Thesis, 2002. http://hdl.handle.net/1957/31851.

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19

Serpa, Jason John. "Structure of prion β-oligomers as determined by structural proteomics". Thesis, 2017. https://dspace.library.uvic.ca//handle/1828/8548.

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The conversion of the native monomeric cellular prion protein (PrPC) into an aggregated pathological β-oligomeric (PrPβ) and an infectious form (PrPSc) is the central element in the development of prion diseases. The structure of the aggregates and the molecular mechanisms of the conformational change involved in this conversion are still unknown. My research hypothesis was that a specific structural rearrangement of normal PrPC monomers leads to the formation of new inter-subunit interaction interfaces in the prion aggregates, leading to aggregation. My approach was to use constraints obta
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