Relevant bibliographies by topics / Cryptic lineage

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  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers

Academic literature on the topic 'Cryptic lineage'

Author: Grafiati
Published: 3 June 2025
Last updated: 31 July 2025

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Journal articles on the topic "Cryptic lineage"

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Gregory, Devon A., Clayton Rushford, Torin Hunter, et al. "Continued selection on cryptic SARS-CoV-2 observed in Missouri wastewater." PLOS Pathogens 19, no. 12 (2023): e1011688. http://dx.doi.org/10.1371/journal.ppat.1011688.

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Deep sequencing of wastewater to detect SARS-CoV-2 has been used during the COVID-19 pandemic to monitor viral variants as they appear and circulate in communities. SARS-CoV-2 lineages of an unknown source that have not been detected in clinical samples, referred to as cryptic lineages, are sometimes repeatedly detected from specific locations. We have continued to detect one such lineage previously seen in a Missouri site. This cryptic lineage has continued to evolve, indicating continued selective pressure similar to that observed in Omicron lineages.
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Puechmaille, Sébastien J., Benjamin Allegrini, Emma S.M. Boston, et al. "Genetic analyses reveal further cryptic lineages within the Myotis nattereri species complex." Mammalian Biology 77, no. 3 (2012): 224–28. https://doi.org/10.5281/zenodo.13415867.

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(Uploaded by Plazi for the Bat Literature Project) In recent years, new cryptic mammalian species have been discovered in Europe, many of which belong to the order Chiroptera. Within this order, some species such as Myotis nattereri contain several cryptic lineages/species, especially in the Mediterranean region. Here we present genetic, phylogenetic and morphological analysis on the Myotis nattereri species complex, focusing on France which is thought to be a contact zone for the different lineages/species. We sequenced the full Cytochrome b gene from individuals from 23 localities and invest
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Puechmaille, Sébastien J., Benjamin Allegrini, Emma S.M. Boston, et al. "Genetic analyses reveal further cryptic lineages within the Myotis nattereri species complex." Mammalian Biology 77, no. 3 (2012): 224–28. https://doi.org/10.5281/zenodo.13415867.

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(Uploaded by Plazi for the Bat Literature Project) In recent years, new cryptic mammalian species have been discovered in Europe, many of which belong to the order Chiroptera. Within this order, some species such as Myotis nattereri contain several cryptic lineages/species, especially in the Mediterranean region. Here we present genetic, phylogenetic and morphological analysis on the Myotis nattereri species complex, focusing on France which is thought to be a contact zone for the different lineages/species. We sequenced the full Cytochrome b gene from individuals from 23 localities and invest
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Puechmaille, Sébastien J., Benjamin Allegrini, Emma S.M. Boston, et al. "Genetic analyses reveal further cryptic lineages within the Myotis nattereri species complex." Mammalian Biology 77, no. 3 (2012): 224–28. https://doi.org/10.5281/zenodo.13415867.

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Abstract:
(Uploaded by Plazi for the Bat Literature Project) In recent years, new cryptic mammalian species have been discovered in Europe, many of which belong to the order Chiroptera. Within this order, some species such as Myotis nattereri contain several cryptic lineages/species, especially in the Mediterranean region. Here we present genetic, phylogenetic and morphological analysis on the Myotis nattereri species complex, focusing on France which is thought to be a contact zone for the different lineages/species. We sequenced the full Cytochrome b gene from individuals from 23 localities and invest
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Puechmaille, Sébastien J., Benjamin Allegrini, Emma S.M. Boston, et al. "Genetic analyses reveal further cryptic lineages within the Myotis nattereri species complex." Mammalian Biology 77, no. 3 (2012): 224–28. https://doi.org/10.5281/zenodo.13415867.

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Abstract:
(Uploaded by Plazi for the Bat Literature Project) In recent years, new cryptic mammalian species have been discovered in Europe, many of which belong to the order Chiroptera. Within this order, some species such as Myotis nattereri contain several cryptic lineages/species, especially in the Mediterranean region. Here we present genetic, phylogenetic and morphological analysis on the Myotis nattereri species complex, focusing on France which is thought to be a contact zone for the different lineages/species. We sequenced the full Cytochrome b gene from individuals from 23 localities and invest
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Puechmaille, Sébastien J., Benjamin Allegrini, Emma S.M. Boston, et al. "Genetic analyses reveal further cryptic lineages within the Myotis nattereri species complex." Mammalian Biology 77, no. 3 (2012): 224–28. https://doi.org/10.5281/zenodo.13415867.

Full text
Abstract:
(Uploaded by Plazi for the Bat Literature Project) In recent years, new cryptic mammalian species have been discovered in Europe, many of which belong to the order Chiroptera. Within this order, some species such as Myotis nattereri contain several cryptic lineages/species, especially in the Mediterranean region. Here we present genetic, phylogenetic and morphological analysis on the Myotis nattereri species complex, focusing on France which is thought to be a contact zone for the different lineages/species. We sequenced the full Cytochrome b gene from individuals from 23 localities and invest
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Puechmaille, Sébastien J., Benjamin Allegrini, Emma S.M. Boston, et al. "Genetic analyses reveal further cryptic lineages within the Myotis nattereri species complex." Mammalian Biology 77, no. 3 (2012): 224–28. https://doi.org/10.5281/zenodo.13415867.

Full text
Abstract:
(Uploaded by Plazi for the Bat Literature Project) In recent years, new cryptic mammalian species have been discovered in Europe, many of which belong to the order Chiroptera. Within this order, some species such as Myotis nattereri contain several cryptic lineages/species, especially in the Mediterranean region. Here we present genetic, phylogenetic and morphological analysis on the Myotis nattereri species complex, focusing on France which is thought to be a contact zone for the different lineages/species. We sequenced the full Cytochrome b gene from individuals from 23 localities and invest
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Parker, Matthew A. "Cryptic species within Amphicarpaea bracteata (Leguminosae): evidence from isozymes, morphology, and pathogen specificity." Canadian Journal of Botany 74, no. 10 (1996): 1640–50. http://dx.doi.org/10.1139/b96-199.

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All North American plants of the genus Amphicarpaea are currently classified into a single variable species (Amphicarpaea bracteata). However, an isozyme analysis of 33 populations from a 1000-km region revealed the presence of two divergent lineages (I, II) that shared no alleles in common at 7 of 18 loci examined. These lineages coexisted on both a local and a regional scale with virtually no hybridization: among nearly 1000 plants analyzed, only a single hybrid individual was found that had alleles from both lineages. A multivariate analysis of seven leaf traits showed that these lineages w
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Liebeke, Manuel, Michael W. Bruford, Robert K. Donnelly, et al. "Identifying biochemical phenotypic differences between cryptic species." Biology Letters 10, no. 9 (2014): 20140615. http://dx.doi.org/10.1098/rsbl.2014.0615.

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Molecular genetic methods can distinguish divergent evolutionary lineages in what previously appeared to be single species, but it is not always clear what functional differences exist between such cryptic species. We used a metabolomic approach to profile biochemical phenotype (metabotype) differences between two putative cryptic species of the earthworm Lumbricus rubellus . There were no straightforward metabolite biomarkers of lineage, i.e. no metabolites that were always at higher concentration in one lineage. Multivariate methods, however, identified a small number of metabolites that tog
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Karlin, Eric F., Sean C. Robinson, and Peter E. Smouse. "Genetic diversity within and across gametophytic ploidy levels in a Sphagnum cryptic species complex." Australian Journal of Botany 68, no. 1 (2020): 49. http://dx.doi.org/10.1071/bt19143.

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We deploy Shannon analysis of five ancestrally (ANCE) diagnostic microsatellite loci to explore the patterns of ‘deep’ allelic genetic diversity within the peat moss Sphagnum ×australe Mitt. s.l. cryptic species complex across its Australasian distribution. There is both notable divergence among and considerable allelic overlap within the three allopolyploid lineages of this complex, two gametophytically allodiploid (R1S1 and R2S2) and one gametophytically allotriploid (FR1*S1*). Detailed biogeographic patterns reflect historical differences in genetic isolation and interbreeding. Lineage I (R
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Dissertations / Theses on the topic "Cryptic lineage"

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Daga, Sergio. "CRISPR/Cas9 gene therapy on urine-derived-podocyte-lineage cells and novel biomarker identification: new perspectives in Alport Syndrome (ATS)." Doctoral thesis, Università di Siena, 2019. http://hdl.handle.net/11365/1072659.

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Alport syndrome (ATS) is an inherited genetic disorder characterized by glomerular basement membrane (GBM) abnormalities up to end-stage renal disease. Usually, in the most severe forms nephropathy is associated with involvement of eyes and ears because of COL4 chains expression being restricted to kidney, ear and eye. Podocytes, key component of the glomerular structure, are the only cells in the kidney able to produce the COLIVα3-α4-α5 heterotrimer and thus, they are extensively defined as key-players in the pathogenesis of the renal disease. We have demonstrated how it is possible to isol
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Bryant, Litticia M. "Cryptic diversity and evolutionary relationships among Australian closed-forest Melomys (Rodentia: Muridae) and related Australo-Papuan mosaic-tailed rats." Thesis, Queensland University of Technology, 2013. https://eprints.qut.edu.au/60846/1/Litticia_Bryant_Thesis.pdf.

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This thesis investigates patterns of evolution in a group of native Australo-Papuan rodents. Past climatic change and associated sea level fluctuations, and fragmentation of wet forests in eastern Australia has facilitated rapid radiation, diversification and speciation in this group. This study adds to our understanding of the evolution of Australia’s rainforest fauna and describes the evolutionary relationships of a new genus of Australian rodent.
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Apanasovich, Tatiyana Vladimirovna. "Testing for spatial correlation and semiparametric spatial modeling of binary outcomes with application to aberrant crypt foci in colon carcinogenesis experiments." Diss., Texas A&M University, 2004. http://hdl.handle.net/1969.1/2674.

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In an experiment to understand colon carcinogenesis, all animals were exposed to a carcinogen while half the animals were also exposed to radiation. Spatially, we measured the existence of aberrant crypt foci (ACF), namely morphologically changed colonic crypts that are known to be precursors of colon cancer development. The biological question of interest is whether the locations of these ACFs are spatially correlated: if so, this indicates that damage to the colon due to carcinogens and radiation is localized. Statistically, the data take the form of binary outcomes (corresponding to the exi
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Bertrand, Claudia. "A MULTIGENE APPROACH FOR INVESTIGATING DNA BARCODE LINEAGES IN PROVISIONAL CRYPTIC SPECIES OF LEPIDOPTERA IN COSTA RICA." Thesis, 2012. http://hdl.handle.net/10214/3560.

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DNA barcoding has illuminated genetically distinct lineages within what appears to be one morphological species. For example, a large-scale DNA barcode analysis of Lepidoptera in the Área de Conservación Guanacaste has revealed that 8% of the morphospecies show more than one DNA barcode lineage. To assess the evolutionary significance of five of these lineages I conducted further molecular analyses by sequencing mitochondrial cytochrome b, nuclear Elongation Factor 1α and ribosomal Internal Transcribed Spacer 2, and compare their gene phylogenies with the provisional species tree hypothesized
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Pereira-da-Conceicoa, Lyndall L., Benjamin W. Price, Helen Margaret Barber-James, Nigel P. Barker, Moor Ferdy C. De, and Martin Herrer Villet. "Cryptic variation in an ecological indicator organism: mitochondrial and nuclear DNA sequence data confirm distinct lineages of Baetis harrisoni Barnard (Ephemeroptera: Baetidae) in Southern Africa." 2012. http://hdl.handle.net/10962/d1005976.

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Baetis harrisoni Barnard is a mayfly frequently encountered in river studies across Africa, but the external morphological features used for identifying nymphs have been observed to vary subtly between different geographic locations. It has been associated with a wide range of ecological conditions, including pH extremes of pH 2.9–10.0 in polluted waters. We present a molecular study of the genetic variation within B. harrisoni across 21 rivers in its distribution range in southern Africa.
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Pereira-da-Conceicoa, Lyundall L., Benjamin W. Price, Helen Margaret Barber-James, Nigel P. Barker, Moor Ferdy C. De, and Martin Herrer Villet. "Cryptic variation in an ecological indicator organism: mitochondrial and nuclear DNA sequence data confirm distinct lineages of Baetis harrisoni Barnard (Ephemeroptera: Baetidae) in southern Africa." 2012. http://hdl.handle.net/10962/d1010990.

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Baetis harrisoni Barnard is a mayfly frequently encountered in river studies across Africa, but the external morphological features used for identifying nymphs have been observed to vary subtly between different geographic locations. It has been associated with a wide range of ecological conditions, including pH extremes of pH 2.9–10.0 in polluted waters. We present a molecular study of the genetic variation within B. harrisoni across 21 rivers in its distribution range in southern Africa.
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"Phylogeography of Pogonomyrmex barbatus and P. rugosus Harvester Ants: A Complex Regional History of Ancient Vicariance and Recent Expansion in Arid- Adapted Insects, and Implications for the Success of Cryptic Hybrid Lineages with GCD." Master's thesis, 2012. http://hdl.handle.net/2286/R.I.15208.

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abstract: Here I present a phylogeographic study of at least six reproductively isolated lineages of harvester ants within the Pogonomyrmex barbatus and P. rugosus species group. The genetic and geographic relationships within this clade are complex: four of the identified lineages are divided into two pairs, and each pair has evolved under a mutualistic system that necessitates sympatry. These paired lineages are dependent upon one another because interlineage matings within each pair are the sole source of hybrid F1 workers; these workers build and sustain the colonies, facilitating the prod
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Books on the topic "Cryptic lineage"

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Monro, Alexandre K., and Simon J. Mayo, eds. Cryptic Species. Cambridge University Press, 2022. http://dx.doi.org/10.1017/9781009070553.

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Cryptic species are organisms which look identical, but which represent distinct evolutionary lineages. They are an emerging trend in organismal biology across all groups, from flatworms, insects, amphibians, primates, to vascular plants. This book critically evaluates the phenomenon of cryptic species and demonstrates how they can play a valuable role in improving our understanding of evolution, in particular of morphological stasis. It also explores how the recognition of cryptic species is intrinsically linked to the so-called 'species problem', the lack of a unifying species concept in bio
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Book chapters on the topic "Cryptic lineage"

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Groth, Jens. "Linear Algebra with Sub-linear Zero-Knowledge Arguments." In Advances in Cryptology - CRYPTO 2009. Springer Berlin Heidelberg, 2009. http://dx.doi.org/10.1007/978-3-642-03356-8_12.

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Biryukov, Alex, Christophe De Cannière, and Michaël Quisquater. "On Multiple Linear Approximations." In Advances in Cryptology – CRYPTO 2004. Springer Berlin Heidelberg, 2004. http://dx.doi.org/10.1007/978-3-540-28628-8_1.

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Niu, Zhongfeng, Siwei Sun, Yunwen Liu, and Chao Li. "Rotational Differential-Linear Distinguishers of ARX Ciphers with Arbitrary Output Linear Masks." In Advances in Cryptology – CRYPTO 2022. Springer Nature Switzerland, 2022. http://dx.doi.org/10.1007/978-3-031-15802-5_1.

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Kaliski, Burton S., and M. J. B. Robshaw. "Linear Cryptanalysis Using Multiple Approximations." In Advances in Cryptology — CRYPTO ’94. Springer Berlin Heidelberg, 1994. http://dx.doi.org/10.1007/3-540-48658-5_4.

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Boneh, Dan, and Richard J. Lipton. "Quantum Cryptanalysis of Hidden Linear Functions." In Advances in Cryptology — CRYPT0’ 95. Springer Berlin Heidelberg, 1995. http://dx.doi.org/10.1007/3-540-44750-4_34.

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Courtois, Nicolas T. "Feistel Schemes and Bi-linear Cryptanalysis." In Advances in Cryptology – CRYPTO 2004. Springer Berlin Heidelberg, 2004. http://dx.doi.org/10.1007/978-3-540-28628-8_2.

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Coppersmith, Don, Shai Halevi, and Charanjit Jutla. "Cryptanalysis of Stream Ciphers with Linear Masking." In Advances in Cryptology — CRYPTO 2002. Springer Berlin Heidelberg, 2002. http://dx.doi.org/10.1007/3-540-45708-9_33.

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Zeng, Kencheng, and Minqiang Hung. "On the Linear Syndrome Method in Cryptanalysis." In Advances in Cryptology — CRYPTO’ 88. Springer New York, 1990. http://dx.doi.org/10.1007/0-387-34799-2_32.

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Kwok, Richard T. C., and Beale Maurice. "Aperiodic Linear Complexities of de Bruijn Sequences." In Advances in Cryptology — CRYPTO’ 88. Springer New York, 1990. http://dx.doi.org/10.1007/0-387-34799-2_33.

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Fisch, Ben, Zeyu Liu, and Psi Vesely. "Orbweaver: Succinct Linear Functional Commitments from Lattices." In Advances in Cryptology – CRYPTO 2023. Springer Nature Switzerland, 2023. http://dx.doi.org/10.1007/978-3-031-38545-2_4.

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Conference papers on the topic "Cryptic lineage"

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Singh, Tarundeep, Sarthak Mishra, Deepak Pandey, Chandani Sharma, Sakshi Koli, and Kapil Joshi. "Crypto currency-bitcoin Price Predictor using Linear Regression and random forest." In 2024 International Conference on Electrical Electronics and Computing Technologies (ICEECT). IEEE, 2024. http://dx.doi.org/10.1109/iceect61758.2024.10738906.

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Holle, Andrew W., Juan Carlos Del Alamo, and Adam J. Engler. "Focal Adhesion Mechanotransduction Regulates Stiffness-Directed Differentiation." In ASME 2013 Summer Bioengineering Conference. American Society of Mechanical Engineers, 2013. http://dx.doi.org/10.1115/sbc2013-14676.

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Human mesenchymal stem cells (hMSCs) are capable of differentiating into mesodermal lineages, with their fate mirroring the tissue lineage possessing a matching in vivo stiffness. The precise mechanisms responsible for this mechanotransduction-induced change in fate are unknown beyond the requirement for force transmission from the extracellular niche through to the nucleus. As a result of cellular contraction, linker proteins connecting the cytoskeleton to the extracellular matrix (ECM) are exposed to differing levels of force and deform to different extents based on the adjacent ECM’s stiffn
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Aronowitz, Hana N. "Investigating cryptic speciation among lineages of hemlock adelgids (Hemiptera: Adelgidae)." In 2016 International Congress of Entomology. Entomological Society of America, 2016. http://dx.doi.org/10.1603/ice.2016.107870.

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Thirumalai, Chandrasegar, M. Senthilkumar, and B. Vaishnavi. "Physicians medicament using linear public key crypto system." In 2016 International Conference on Electrical, Electronics, and Optimization Techniques (ICEEOT). IEEE, 2016. http://dx.doi.org/10.1109/iceeot.2016.7755025.

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BICUDO, P. "EXOTIC PENTAQUARKS, CRYPTO-HEPTAQUARKS AND LINEAR THREE-HADRONIC MOLECULES." In Proceedings of the International Workshop. WORLD SCIENTIFIC, 2005. http://dx.doi.org/10.1142/9789812701855_0056.

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Habowski, Amber, Jessica Flesher, Jennifer Bates, et al. "Abstract 5723: Loss of stemness and lineage commitment in the intestinal crypt." In Proceedings: AACR Annual Meeting 2020; April 27-28, 2020 and June 22-24, 2020; Philadelphia, PA. American Association for Cancer Research, 2020. http://dx.doi.org/10.1158/1538-7445.am2020-5723.

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de la Piedra, Antonio, Marloes Venema, and Greg Alpár. "ACABELLA: Automated (Crypt)analysis of Attribute-Based Encryption Leveraging Linear Algebra." In CCS '23: ACM SIGSAC Conference on Computer and Communications Security. ACM, 2023. http://dx.doi.org/10.1145/3576915.3616576.

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Kachinsky, A. V., A. V. Ermakov, and V. A. Orlovich. "A New Method for Generation of a Variety of Narrow-Band Lines of High-Power Radiation in the UV Spectrum Region." In The European Conference on Lasers and Electro-Optics. Optica Publishing Group, 1998. http://dx.doi.org/10.1364/cleo_europe.1998.cwf1.

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The progress established over the last decade in creation of UV radiation sources and highly sensitive multichannel detectors made it possible to successfully conduct the experiments in UV Raman spectroscopy with application to fundamental and applied studies in biology and material science. Among these are studies of the protein structure and dynamics along with diamond film growth. In these experiments, CW or pulsed UV radiation sources are normally used. Argon-and Crypton-ion CW frequency-doubled lasers. Nd:YAG pulsed lasers with harmonic generators and non-linear optical converters, based
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Asghar, Laiba, Fawad Ahmed, Muhammad Shahbaz Khan, Arshad Arshad, and Jawad Ahmad. "Noise-Crypt: Image Encryption with Non-linear Noise, Hybrid Chaotic Maps, and Hashing." In 2023 International Conference on Engineering and Emerging Technologies (ICEET). IEEE, 2023. http://dx.doi.org/10.1109/iceet60227.2023.10526153.

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