Relevant bibliographies by topics / Crystallization – Experiments – Software

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  1. Journal articles
  2. Dissertations / Theses
  3. Book chapters

Academic literature on the topic 'Crystallization – Experiments – Software'

Author: Grafiati
Published: 4 June 2021
Last updated: 10 February 2022

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Journal articles on the topic "Crystallization – Experiments – Software"

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Watts, David, Jochen Müller-Dieckmann, Gohar Tsakanova, Victor S. Lamzin, and Matthew R. Groves. "Quantitive evaluation of macromolecular crystallization experiments using 1,8-ANS fluorescence." Acta Crystallographica Section D Biological Crystallography 66, no. 8 (July 10, 2010): 901–8. http://dx.doi.org/10.1107/s0907444910020664.

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Modern X-ray structure analysis and advances in high-throughput robotics have allowed a significant increase in the number of conditions screened for a given sample volume. An efficient evaluation of the increased amount of crystallization trials in order to identify successful experiments is now urgently required. A novel approach is presented for the visualization of crystallization experiments using fluorescence from trace amounts of a nonspecific dye. The fluorescence images obtained strongly contrast protein crystals against other phenomena, such as precipitation and phase separation. Nov
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Mele, Katarina, Rongxin Li, Vincent J. Fazio, and Janet Newman. "Quantifying the quality of the experiments used to grow protein crystals: theiQCsuite." Journal of Applied Crystallography 47, no. 3 (May 29, 2014): 1097–106. http://dx.doi.org/10.1107/s1600576714009728.

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Millions of crystallization trials are set up each year, with no clear metrics for determining if the experiments were correctly dispensed. This article reports the development of a software tool (iQC–image Quality Control) that recognizes factors associated with suboptimal experimental control during the setting up of protein crystallization trials. In its simplest form,iQCreturns a report that gives an overall rating to the quality of an experimental setup. TheiQCsoftware is able to identify many common problems observed in setting up crystallization trials – droplets that have associated sp
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Wilson, Julie, and Ian Berry. "The use of gradient direction in pre-processing images from crystallization experiments." Journal of Applied Crystallography 38, no. 3 (May 13, 2005): 493–500. http://dx.doi.org/10.1107/s0021889805007442.

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Robots are now used routinely to perform crystallization experiments and many laboratories now have imaging systems to record the results. These images must be evaluated rapidly and the results fed back into optimization procedures. Software to analyse the images is being developed; described here are methods to restrict the area of the image to be analysed in order to speed up processing. Properties of the gradient of greyscale images are used to identify first the well and then the crystallization drop for various crystallization trays and different imaging systems. Methods are discussed to
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Audic, Stéphane, Fabrice Lopez, Jean-Michel Claverie, Olivier Poirot, and Chantal Abergel. "SAmBA: An interactive software for optimizing the design of biological macromolecules crystallization experiments." Proteins: Structure, Function, and Genetics 29, no. 2 (October 1997): 252–57. http://dx.doi.org/10.1002/(sici)1097-0134(199710)29:2<252::aid-prot12>3.0.co;2-n.

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Yamada, Yusuke, Naohiro Matsugaki, Masahiko Hiraki, Ryuichi Kato, and Toshiya Senda. "In-situ diffraction experiments at the Photon Factory MX beamlines." Acta Crystallographica Section A Foundations and Advances 70, a1 (August 5, 2014): C500. http://dx.doi.org/10.1107/s2053273314094996.

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Crystallization trial is one of the most important but time-consuming steps in macromolecular crystallography. Once a crystal appears in a certain crystallization condition, the crystal is typically harvested from the crystallization drop, soaked into a cryoprotection buffer, flash-cooled with a liquid nitrogen or cold gas flow and finally evaluated its diffraction quality by an X-ray beam. During these long process, crystal may be damaged and the result from the diffraction experiment does not necessarily reflect a nature of the crystal. On in-situ diffraction experiment, where a crystal in a
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Kang, Yue, Chao Liu, Yuzhu Zhang, and Hongwei Xing. "Influence of Crystallization Behavior of Gas Quenching Blast Furnace Slag on the Preparation of Amorphous Slag Beads." Crystals 10, no. 1 (January 10, 2020): 30. http://dx.doi.org/10.3390/cryst10010030.

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Slag beads with different crystal content could be obtained through the gas quenching blast furnace slag (BFS) process. In order to increase the additional value of the slag beads as much as possible, it was necessary to restrain the crystallization of the slag beads as much as possible. In this paper, the mineral types and crystallization temperatures of BFS with different basicities and cooling rates were studied by using Factsage thermodynamic software, XRD, and differential scanning calorimeter (DSC) experiments, which obtained the gas quenching temperature and the cooling rate needed to r
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Junius, Niels, Esko Oksanen, Maxime Terrien, Christophe Berzin, Jean-Luc Ferrer, and Monika Budayova-Spano. "A crystallization apparatus for temperature-controlled flow-cell dialysis with real-time visualization." Journal of Applied Crystallography 49, no. 3 (April 22, 2016): 806–13. http://dx.doi.org/10.1107/s1600576716004635.

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Many instrumentation developments in crystallization have concentrated on massive parallelization assays and reduction of sample volume per experiment to find initial crystallization conditions. Yet improving the size and diffraction quality of the crystals for diffraction studies often requires decoupling of crystal nucleation and growth. This in turn requires the control of variables such as precipitant and protein concentration, equilibration rate, and temperature, which are all difficult parameters to control in the existing setups. The success of the temperature-controlled batch method, o
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Frølich, Simon, and Henrik Birkedal. "MultiRef: software platform for Rietveld refinement of multiple powder diffractograms fromin situ, scanning or diffraction tomography experiments." Journal of Applied Crystallography 48, no. 6 (November 19, 2015): 2019–25. http://dx.doi.org/10.1107/s1600576715020099.

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Modern advanced diffraction experiments such asin situdiffraction, position-resolved diffraction or diffraction tomography generate extremely large data sets with hundreds to many thousands of diffractograms. Analyzing such data sets by Rietveld refinement is hampered by the logistics of running the Rietveld refinement program, extracting and analyzing the results, and possibly re-refining the data set based on an analysis of the preceding cycle of refinements. The complexity of the analysis may prevent some researchers either from performing the experiments or from conducting an exhaustive an
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Murthy, Tal, Yongcheng Wang, Colin Reynolds, and Titus J. Boggon. "Automated Protein Crystallization Trials Using the Thermo Scientific Matrix Hydra II eDrop." JALA: Journal of the Association for Laboratory Automation 12, no. 4 (August 2007): 213–18. http://dx.doi.org/10.1016/j.jala.2007.04.001.

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Obtaining suitable crystals for X-ray diffraction experiments is one of the rate-limiting steps in macromolecular crystallography. Robotic platforms that can increase throughput are highly desirable for crystal screening operations. The Thermo Scientific Matrix Hydra II eDrop is a liquid handling robot capable of dispensing sub-microliter and microliter volumes of solutions. Equipped with single-channel noncontact microdispenser, 96-channel syringe-based contact microdispenser and user-friendly ControlMate software, the Thermo Scientific Matrix Hydra II eDrop is appropriately designed for crys
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Tian, Runze, Yu Zhang, Anhua Xu, Xuemei Li, Yunlong Hou, and Bowen Tai. "Impact of Cooling on Water and Salt Migration of High-Chlorine Saline Soils." Geofluids 2021 (August 30, 2021): 1–12. http://dx.doi.org/10.1155/2021/8612762.

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Secondary salinization is a common problem in saline soil projects. In order to grasp the mechanism of water and salt migration of high-chlorine saline soil during the cooling process, the saline soils along the Qarhan-Golmud Highway in the Qinghai-Tibet Plateau were selected as test samples. Firstly, the basic physical parameter test and the soluble salt chemical experiment were carried out and obtained liquid and plastic limits, dry density, etc. Secondly, freezing temperature experiments and water-salt migration experiments under one-way cooling conditions were conducted according to the ac
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Dissertations / Theses on the topic "Crystallization – Experiments – Software"

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Mooranian, Mahsa. "My Crystal Diary (MCD) : an integrated software application for recording the observations and results of crystallisation experiments." University of Western Australia. School of Electrical, Electronic and Computer Engineering, 2008. http://theses.library.uwa.edu.au/adt-WU2008.0121.

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Recent technological advances in computer science have contributed to immense data generation in many critical areas of biology. These data can be used in intelligent information systems to better understand biological processes from the atomic details of biological molecules to the interaction of species in an ecosystem. This thesis presents My Crystal Diary (MCD), an integrated software application designed for use in an intelligent decision-support system for planning novel crystallisation experiments. PostgreSQL database server is the information repository containing both the experimental
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Book chapters on the topic "Crystallization – Experiments – Software"

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Yan, Yuhong, Yong Liang, Abhijeet Roy, and Xinge Du. "Web Service Enabled Online Laboratory." In Electronic Services, 1236–52. IGI Global, 2010. http://dx.doi.org/10.4018/978-1-61520-967-5.ch075.

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Online experimentation allows students from anywhere to operate remote instruments at any time. The current techniques constrain users to bind to products from one company and install client side software. We use Web services and Service Oriented Architecture to improve the interoperability and usability of the remote instruments. Under a service oriented architecture for online experiment system, a generic methodology to wrap commercial instruments using IVI and VISA standard as Web services is developed. We enhance the instrument Web services into stateful services so that they can manage user booking and persist experiment results. We also benchmark the performance of this system when SOAP is used as the wire format for communication and propose solutions to optimize performance. In order to avoid any installation at the client side, the authors develop Web 2.0 based techniques to display the virtual instrument panel and real time signals with just a standard Web browser. The technique developed in this article can be widely used for different real laboratories, such as microelectronics, chemical engineering, polymer crystallization, structural engineering, and signal processing.
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Journal articles
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