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Journal articles on the topic 'DNA analyses'

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1

Ovesná, J., K. Poláková, and L. Leišová. "DNA analyses and their applications in plant breeding." Czech Journal of Genetics and Plant Breeding 38, No. 1 (2012): 29–40. http://dx.doi.org/10.17221/6108-cjgpb.

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In recent years, molecular markers have been developed based on the more detailed knowledge of genome structure. Considerable emphasis has been laid on the use of molecular markers in practical breeding and genotype identification. This review attempts to give an account of different molecular markers currently available for genome mapping and for tagging different traits – restriction fragment length polymorphisms (RFLPs), random amplified polymorphic DNAs (RAPDs), amplified fragment length polymorphisms (AFLPs) and microsatellites. Other markers, expressed sequence tags (ESTs) and
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2

GOTO-YAMAMOTO, Nami. "Taxonomic Analysis Koshu Grape with Polymorphic DNA Analyses." JOURNAL OF THE BREWING SOCIETY OF JAPAN 106, no. 3 (2011): 116–20. http://dx.doi.org/10.6013/jbrewsocjapan.106.116.

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3

Paijmans, Johanna L. A., M. Thomas P. Gilbert, and Michael Hofreiter. "Mitogenomic analyses from ancient DNA." Molecular Phylogenetics and Evolution 69, no. 2 (2013): 404–16. http://dx.doi.org/10.1016/j.ympev.2012.06.002.

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4

IHARA, Toshihiro. "Multiplexed DNA Analyses Using Nanoparticles." Kobunshi 56, no. 4 (2007): 213. http://dx.doi.org/10.1295/kobunshi.56.213.

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5

Hoheisel, Jörg D. "Standardisation of DNA-array analyses." Nature Genetics 23, S3 (1999): 51. http://dx.doi.org/10.1038/14326.

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6

Clarke, B. C., L. B. Moran, and R. Appels. "DNA analyses in wheat breeding." Genome 32, no. 2 (1989): 334–39. http://dx.doi.org/10.1139/g89-450.

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A simplified procedure of sample preparation for the isolation of DNA (accessible to restriction fragment length polymorphism, RFLP, mapping) from wheat leaf material is presented. The procedure utilizes a sap extractor and approximately 500 samples can be processed in 1 week. The ability to handle this number of samples makes it feasible to interact with a plant breeding programme when a particularly valuable DNA marker is available. Three examples of analysing large populations are presented to demonstrate the application of the modified procedure to isolating DNA from wheat leaves.Key words
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7

Pääbo, Svante, Hendrik Poinar, David Serre, et al. "Genetic Analyses from Ancient DNA." Annual Review of Genetics 38, no. 1 (2004): 645–79. http://dx.doi.org/10.1146/annurev.genet.37.110801.143214.

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8

SCHULZE, FRANK, ERNST BOEHNLEIN, and PETER GRUSS. "Mutational Analyses of the Moloney Murine Sarcoma Virus Enhancer." DNA 4, no. 3 (1985): 193–202. http://dx.doi.org/10.1089/dna.1985.4.193.

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9

Willems, A., R. Coopman, and M. Gillis. "Phylogenetic and DNA-DNA hybridization analyses of Bradyrhizobium species." International Journal of Systematic and Evolutionary Microbiology 51, no. 1 (2001): 111–17. http://dx.doi.org/10.1099/00207713-51-1-111.

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10

Zeng, Hu, Bo He, Chengqi Yi, and Jinying Peng. "Liquid biopsies: DNA methylation analyses in circulating cell-free DNA." Journal of Genetics and Genomics 45, no. 4 (2018): 185–92. http://dx.doi.org/10.1016/j.jgg.2018.02.007.

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11

Li, Bojian, Sun Chen, Kun Sun, Rang Xu, and Yurong Wu. "Genetic Analyses Identified a SALL4 Gene Mutation Associated with Holt–Oram Syndrome." DNA and Cell Biology 37, no. 4 (2018): 398–404. http://dx.doi.org/10.1089/dna.2017.4094.

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12

Sun, Hong, Hai-Ying Zou, Xin-Yi Cai, et al. "Network Analyses of the Differential Expression of Heat Shock Proteins in Glioma." DNA and Cell Biology 39, no. 7 (2020): 1228–42. http://dx.doi.org/10.1089/dna.2020.5425.

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13

Zakrýs, Bożena, Ireneuz Moraczewski, and Robert Kucharski. "The species concept in Euglena in the light of DNA polymorphism analyses." Algological Studies/Archiv für Hydrobiologie, Supplement Volumes 86 (October 19, 1997): 51–79. http://dx.doi.org/10.1127/algol_stud/86/1997/51.

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14

Lodolo, E. J., F. T. Rossouw, and N. P. Ferreira. "Mitochondrial DNA Analyses of the Lipomycetaceae." Systematic and Applied Microbiology 13, no. 1 (1990): 1–7. http://dx.doi.org/10.1016/s0723-2020(11)80172-4.

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15

Galbraith, David W. "DNA Microarray Analyses in Higher Plants." OMICS: A Journal of Integrative Biology 10, no. 4 (2006): 455–73. http://dx.doi.org/10.1089/omi.2006.10.455.

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16

Barbič, Andrej, and Donald M. Crothers. "Comparison of Analyses of DNA Curvature." Journal of Biomolecular Structure and Dynamics 21, no. 1 (2003): 89–97. http://dx.doi.org/10.1080/07391102.2003.10506907.

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17

Sahin, Kaniye, Sibel Yilmaz, Aslihan Temel, and Nermin Gozukirmizi. "DNA methylation analyses of monozygotic twins." Current Opinion in Biotechnology 22 (September 2011): S105. http://dx.doi.org/10.1016/j.copbio.2011.05.334.

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18

Natal, M., M. Nagae, Y. Aoki, K. Sagisaka, and S. Uehara. "Prenatal paternity testing with DNA analyses." International Journal of Legal Medicine 106, no. 3 (1993): 160–62. http://dx.doi.org/10.1007/bf01225240.

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19

Schiebelhut, Lauren M., Sarah S. Abboud, Liza E. Gómez Daglio, Holly F. Swift, and Michael N. Dawson. "A comparison of DNA extraction methods for high-throughput DNA analyses." Molecular Ecology Resources 17, no. 4 (2016): 721–29. http://dx.doi.org/10.1111/1755-0998.12620.

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20

Rohland, Nadin, Heike Siedel, and Michael Hofreiter. "Nondestructive DNA extraction method for mitochondrial DNA analyses of museum specimens." BioTechniques 36, no. 5 (2004): 814–21. http://dx.doi.org/10.2144/04365st05.

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21

De Windt, Aloys, Myriam Rai, Leena Kytömäki, et al. "Gene Set Enrichment Analyses Revealed Several Affected Pathways in Niemann-Pick Disease Type C Fibroblasts." DNA and Cell Biology 26, no. 9 (2007): 665–71. http://dx.doi.org/10.1089/dna.2006.0570.

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22

Zhou, Chuang, Yi Liu, Lu Qiao, et al. "Genome-Wide Analyses Provide Insights into the Scavenging Lifestyle of the Striped Hyena (Hyaena hyaena)." DNA and Cell Biology 39, no. 10 (2020): 1872–85. http://dx.doi.org/10.1089/dna.2020.5537.

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23

Hu, Ping, Yuanyuan Gao, Ying Huang, et al. "Gene Expression-Based Immune Cell Infiltration Analyses of Prostate Cancer and Their Associations with Survival Outcome." DNA and Cell Biology 39, no. 7 (2020): 1194–204. http://dx.doi.org/10.1089/dna.2020.5371.

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24

HORAI, Satoshi. "Mitochondrial DNA Analyses of Human and primates." Primate Research 2, no. 1 (1986): 51–54. http://dx.doi.org/10.2354/psj.2.51.

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25

FAN, Aiping, Zhijuan CAO, Huan LI, Masaaki KAI, and Jianzhong LU. "Chemiluminescence Platforms in Immunoassay and DNA Analyses." Analytical Sciences 25, no. 5 (2009): 587–97. http://dx.doi.org/10.2116/analsci.25.587.

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26

Glazer, Alexander N., and Richard A. Mathies. "Energy-transfer fluorescent reagents for DNA analyses." Current Opinion in Biotechnology 8, no. 1 (1997): 94–102. http://dx.doi.org/10.1016/s0958-1669(97)80163-2.

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27

Zahn, Laura M. "DNA analyses of an early East Asian." Science 370, no. 6516 (2020): 543.20–545. http://dx.doi.org/10.1126/science.370.6516.543-t.

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28

Ludwig, A., U. Arndt, L. Debus, E. Rosello, and A. Morales. "Ancient mitochondrial DNA analyses of Iberian sturgeons." Journal of Applied Ichthyology 25, no. 1 (2009): 5–9. http://dx.doi.org/10.1111/j.1439-0426.2009.01184.x.

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29

Cowell, R. G., S. L. Lauritzen, and J. Mortera. "A gamma model for {DNA} mixture analyses." Bayesian Analysis 2, no. 2 (2007): 333–48. http://dx.doi.org/10.1214/07-ba214.

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30

Müller-Germann, Isabell, Bernhard Vogel, Heike Vogel, et al. "Quantitative DNA Analyses for Airborne Birch Pollen." PLOS ONE 10, no. 10 (2015): e0140949. http://dx.doi.org/10.1371/journal.pone.0140949.

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31

Ramirez, Dario C., Sandra E. Gomez-Mejiba, and Ronald P. Mason. "Immuno-spin trapping analyses of DNA radicals." Nature Protocols 2, no. 3 (2007): 512–22. http://dx.doi.org/10.1038/nprot.2007.5.

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32

Kuveljić, Jovana, Tamara Đurić, Ivan Jovanović, Maja Živković, and Aleksandra Stanković. "Basic use of DNA analyses in medicine." Srce i krvni sudovi 32, no. 4 (2013): 104–9. http://dx.doi.org/10.5937/siks1302104k.

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33

Kanaya, Eiko, Yohtaro Uchiyama, Eiko Ohtsuka, Yoshio Ueno, Morio Ikehara, and Shigenori Kanaya. "Kinetic analyses of DNA-linked ribonucleases H with different sizes of DNA." FEBS Letters 354, no. 2 (1994): 227–31. http://dx.doi.org/10.1016/0014-5793(94)01131-1.

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34

Agurell, Eva, Ronggui Li, Ulf Rannug, Ulf Norming, Bernhard Tribukait, and Claes Ramel. "Detection of DNA alterations in human bladder tumors by DNA fingerprint analyses." Cancer Genetics and Cytogenetics 61, no. 1 (1992): 53–60. http://dx.doi.org/10.1016/0165-4608(92)90371-e.

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35

Gamero, Joaquín-Jose, Jose-Luis Romero, Juan-Luis Peralta, Monica Carvalho, Maria-Conceiçao Vide, and Francisco Corte-Real. "Some social and ethical aspects of DNA analyses and DNA profile databases." International Congress Series 1288 (April 2006): 777–79. http://dx.doi.org/10.1016/j.ics.2005.10.045.

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36

Xiao, Shengjue, Yufei Zhou, Qi Wu, et al. "FCER1G and PTGS2 Serve as Potential Diagnostic Biomarkers of Acute Myocardial Infarction Based on Integrated Bioinformatics Analyses." DNA and Cell Biology 40, no. 8 (2021): 1064–75. http://dx.doi.org/10.1089/dna.2020.6447.

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37

Kruse, Kai, Sven Sewitz, and M. Madan Babu. "A complex network framework for unbiased statistical analyses of DNA–DNA contact maps." Nucleic Acids Research 41, no. 2 (2012): 701–10. http://dx.doi.org/10.1093/nar/gks1096.

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38

Kikkawa, Hitomi S., Ritsuko Sugita, and Shinichi Suzuki. "Discrimination of Grass Hay Samples by DNA Analyses." Japanese Journal of Forensic Science and Technology 15, no. 2 (2010): 151–58. http://dx.doi.org/10.3408/jafst.15.151.

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39

Maruyama, Y., andriy Kovalenko, and F. Hirata. "1P128 Hydration structure of DNA : 3D-RISM analyses." Seibutsu Butsuri 44, supplement (2004): S61. http://dx.doi.org/10.2142/biophys.44.s61_4.

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40

Sluis-Cremer, Nicolas, and Ellis S. Kempner. "Radiation Target Analyses of DNA Template/Primer Complexes." Biophysical Journal 90, no. 9 (2006): L61—L63. http://dx.doi.org/10.1529/biophysj.106.083261.

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41

Schrader, James A., and William R. Graves*. "DNA Analyses of the Genus Dirca L. (Leatherwoods)." HortScience 39, no. 4 (2004): 757C—757. http://dx.doi.org/10.21273/hortsci.39.4.757c.

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Long regarded as a genus of two species, Dirca L. was expanded to include a third North American shrub discovered in 1994 as one population in the Sierra Madre Oriental of Tamaulipas in northeastern Mexico. The designation of Dirca mexicana Nesom & Mayfield as a third species in the genus was based in part on geographical separation from Dirca palustris L. and Dirca occidentalis Gray, which occur farther north in eastern North America and in a small region of California, respectively. Morphologically, D. mexicana was regarded as more similar to D. occidentalis than to D. palustris. Our obj
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42

Oto, Michiei. "DNA analyses by capillary electrophoresis and DHPLC technique." SEIBUTSU BUTSURI KAGAKU 45, no. 1 (2001): 17–22. http://dx.doi.org/10.2198/sbk.45.17.

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43

Walker, G. C., L. Marsh, and L. A. Dodson. "Genetic Analyses of DNA Repair: Inference and Extrapolation." Annual Review of Genetics 19, no. 1 (1985): 103–26. http://dx.doi.org/10.1146/annurev.ge.19.120185.000535.

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44

ZHANG, X., and S. E. JACOBSEN. "Genetic Analyses of DNA Methyltransferases in Arabidopsis thaliana." Cold Spring Harbor Symposia on Quantitative Biology 71 (January 1, 2006): 439–47. http://dx.doi.org/10.1101/sqb.2006.71.047.

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45

Park, Joonghoon, Steven Davis, Tatsanee Suteevun, et al. "DNA Methylation Analyses in Lungs of Cloned Pigs." Biology of Reproduction 78, Suppl_1 (2008): 65–66. http://dx.doi.org/10.1093/biolreprod/78.s1.65c.

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46

Torigoe, H., T. Katayama, and Y. Umegaki. "Thermodynamic analyses of purine motif triplex DNA formation." Nucleic Acids Symposium Series 3, no. 1 (2003): 159–60. http://dx.doi.org/10.1093/nass/3.1.159.

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47

Cavallini, Andrea, and Lucia Natali. "Nuclear DNA variability withinPisum sativum (Leguminosae): Cytophotometric analyses." Plant Systematics and Evolution 173, no. 3-4 (1990): 179–85. http://dx.doi.org/10.1007/bf00940861.

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48

Dufva, C., and A. Nilsson. "Success rate of LT DNA analyses in casework." Forensic Science International: Genetics Supplement Series 3, no. 1 (2011): e271-e272. http://dx.doi.org/10.1016/j.fsigss.2011.08.132.

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49

Ronaghi, Mostafa, Malin Nygren, Joakim Lundeberg, and Pål Nyrén. "Analyses of Secondary Structures in DNA by Pyrosequencing." Analytical Biochemistry 267, no. 1 (1999): 65–71. http://dx.doi.org/10.1006/abio.1998.2978.

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50

von Kanel, Thomas, Dominik Gerber, André Schaller, et al. "Quantitative 1-Step DNA Methylation Analysis with Native Genomic DNA as Template." Clinical Chemistry 56, no. 7 (2010): 1098–106. http://dx.doi.org/10.1373/clinchem.2009.142828.

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Abstract Background: DNA methylation analysis currently requires complex multistep procedures based on bisulfite conversion of unmethylated cytosines or on methylation-sensitive endonucleases. To facilitate DNA methylation analysis, we have developed a quantitative 1-step assay for DNA methylation analysis. Methods: The assay is based on combining methylation-sensitive FastDigest® endonuclease digestion and quantitative real-time PCR (qPCR) in a single reaction. The first step consists of DNA digestion, followed by endonuclease inactivation and qPCR. The degree of DNA methylation is evaluated
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