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Journal articles on the topic 'DNA-based approach'

Author: Grafiati

Published: 7 June 2025

Last updated: 2 August 2025

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1

Gullaiya, Jyoti, Naresh Kumar, and Neeharika Srivastava. "Effect of formalin fixation on DNA: A Time-Based Approach." Indian Journal of Forensic Medicine and Pathology 14, no. 4 (2021): 825–30. http://dx.doi.org/10.21088/ijfmp.0974.3383.14421.7.

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Introduction:Tissue preservation is important. From it forensic scientist may extract sufficient DNA for profiling. The most commonly used preservative found in the literature is formalin. However, it causes severe side-effects on its users as well as the environment; we need to find its replacement. Method:This study examined whether formalin could preserve soft tissues (fresh) stored at 4°C for 100 days and how DNA can be extracted from it. Qualification and Quantification of the presevred samples were done. Result:The results revealed that tissues preserved in formalin failed to generate su

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2

Ameyaw, Y., and I. Kyere. "Analogy-based Instructional Approach a Panacea to Students' Performance in Studying Deoxyribonucleic Acid (DNA) Concepts." International Journal of Sciences Volume 7, no. 2018-05 (2018): 7–13. https://doi.org/10.5281/zenodo.3350311.

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The purpose of this study is to investigate the use of concept map to enhance academic performance of students in DNA concepts. Quasi experimental design was used for the study. Thirty-nine (39) students from Boakye Tromo Senior High/Technical School, Duayaw Nkwanta in the Brong Ahafo Region of Ghana were purposively selected and used for the study. Molecular Concept Achievement Test (MCAT) was developed, and used for both pre-test and post-test. The reliability coefficient of MCAT was established at 0.87 using Kudder-Richardson formula 20 (KR 20). All the thirty nine (39) students were taught

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3

SMITH, LLOYD M., ROBERT M. CORN, ANNE E. CONDON, et al. "A Surface-Based Approach to DNA Computation." Journal of Computational Biology 5, no. 2 (1998): 255–67. http://dx.doi.org/10.1089/cmb.1998.5.255.

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4

Roy, Pradipta, Swati Sinha, and Debashis De. "Algorithmic Approach for DNA Based Multiplexer Design." Journal of Bioinformatics and Intelligent Control 3, no. 3 (2014): 179–85. http://dx.doi.org/10.1166/jbic.2014.1084.

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5

Nykypanchuk, Dmytro, Mathew M. Maye, Daniel van der Lelie, and Oleg Gang. "DNA-Based Approach for Interparticle Interaction Control." Langmuir 23, no. 11 (2007): 6305–14. http://dx.doi.org/10.1021/la0637566.

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6

Zhu, Enqiang, Xianhang Luo, Chanjuan Liu, and Congzhou Chen. "An Operational DNA Strand Displacement Encryption Approach." Nanomaterials 12, no. 5 (2022): 877. http://dx.doi.org/10.3390/nano12050877.

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DeoxyriboNucleic Acid (DNA) encryption is a new encryption method that appeared along with the research of DNA nanotechnology in recent years. Due to the complexity of biology in DNA nanotechnology, DNA encryption brings in an additional difficulty in deciphering and, thus, can enhance information security. As a new approach in DNA nanotechnology, DNA strand displacement has particular advantages such as being enzyme free and self-assembly. However, the existing research on DNA-strand-displacement-based encryption has mostly stayed at a theoretical or simulation stage. To this end, this paper

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7

Kaufmann, Beate, Or Willinger, Nanami Kikuchi, et al. "An Oligo-Library-Based Approach for Mapping DNA–DNA Triplex Interactions In Vitro." ACS Synthetic Biology 10, no. 8 (2021): 1808–20. http://dx.doi.org/10.1021/acssynbio.1c00122.

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8

Karakose, Mehmet, and Ugur Cigdem. "QPSO-Based Adaptive DNA Computing Algorithm." Scientific World Journal 2013 (2013): 1–8. http://dx.doi.org/10.1155/2013/160687.

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DNA (deoxyribonucleic acid) computing that is a new computation model based on DNA molecules for information storage has been increasingly used for optimization and data analysis in recent years. However, DNA computing algorithm has some limitations in terms of convergence speed, adaptability, and effectiveness. In this paper, a new approach for improvement of DNA computing is proposed. This new approach aims to perform DNA computing algorithm with adaptive parameters towards the desired goal using quantum-behaved particle swarm optimization (QPSO). Some contributions provided by the proposed

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Schön, Isa, and Koen Martens. "Phylogenetic Reconstructions of Ostracodes – A Molecular Approach." Paleontological Society Papers 9 (November 2003): 71–88. http://dx.doi.org/10.1017/s1089332600002151.

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Molecular work on ostracodes has thus far either used allozyme-based or DNA-based techniques. The application of allozyme-based methods has provided numerous data on population genetics and reproductive modes in ostracodes. With this technique, it has also been possible to construct phylogenies, although these have been restricted to distance-based methods. With the usage of DNA-based methods, a new era in ostracode research has begun. It is now possible to obtain accurate estimates for genetic diversities at very fine scales, even within individuals. The DNA-based approach is also very useful

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10

Gupta, Ritu, and Anchal Jain. "A New Image Encryption Algorithm based on DNA Approach." International Journal of Computer Applications 85, no. 18 (2014): 27–31. http://dx.doi.org/10.5120/14942-3440.

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11

Sharon, Eilon, Shai Lubliner, and Eran Segal. "A Feature-Based Approach to Modeling Protein–DNA Interactions." PLoS Computational Biology 4, no. 8 (2008): e1000154. http://dx.doi.org/10.1371/journal.pcbi.1000154.

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12

Waris, Mohammad Maqbool, Cesar Sanin, and Edward Szczerbicki. "Toward Smart Innovation Engineering: Decisional DNA-Based Conceptual Approach." Cybernetics and Systems 47, no. 1-2 (2016): 149–59. http://dx.doi.org/10.1080/01969722.2016.1128775.

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13

Carson, A., Z. Wang, X. Xiao, and S. A. Khan. "A DNA recombination-based approach to eliminate papillomavirus infection." Gene Therapy 12, no. 6 (2005): 534–40. http://dx.doi.org/10.1038/sj.gt.3302447.

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14

Nugent, Kimberly G., and Barry J. Saville. "Forensic analysis of hallucinogenic fungi: a DNA-based approach." Forensic Science International 140, no. 2-3 (2004): 147–57. http://dx.doi.org/10.1016/j.forsciint.2003.11.022.

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15

Pauli, Jonathan N., John P. Whiteman, Bruce G. Marcot, Terry M. McClean, and Merav Ben-David. "DNA-based approach to aging martens (Martes americanaandM. caurina)." Journal of Mammalogy 92, no. 3 (2011): 500–510. http://dx.doi.org/10.1644/10-mamm-a-252.1.

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16

Singh, Harneet, Karan Chugh, Harsh Dhaka, and A. K. Verma. "DNA based Cryptography: an Approach to Secure Mobile Networks." International Journal of Computer Applications 1, no. 19 (2010): 82–85. http://dx.doi.org/10.5120/399-595.

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17

Heller, Richard, Cathryn Lundberg, Chelsea Edelblute, Sezgi Arpag-Mcintosh, and Guilan Shi. "Immunotherapy for melanoma using nonviral plasmid DNA based approach." Journal of Immunology 200, no. 1_Supplement (2018): 122.4. http://dx.doi.org/10.4049/jimmunol.200.supp.122.4.

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Abstract Malignant melanoma is the deadliest form of skin cancer. New immunotherapy approaches including anti-CTLA4, anti-PD-1 and anti-PD1-L1 have improved this prognosis for several patients. While the results obtained with these therapies are encouraging, there is still a need to establish improved therapies. IL-12 is a potent cytokine mediating antitumor activity. However, it has only achieved modest antitumor effects in clinical trials, often accompanied by unacceptable adverse events. We evaluated if intratumoral delivery of a plasmid encoding IL-12 using gene electrotransfer (GET) could

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18

O. K. Berdewad, Laeequr Raheman, V. A. Jadhav. "A Hamilton Path-Based Approach to DNA Sequence Analysis." Tuijin Jishu/Journal of Propulsion Technology 44, no. 4 (2023): 5534–41. http://dx.doi.org/10.52783/tjjpt.v44.i4.1937.

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The Hamiltonian path is a famous algorithm for determining the existence or nonexistence of a graph. However, for certain types of graphs, we can apply certain conditions to determine its existence. In this paper, we discuss the results show that there can be at most (n-1)/2 edges disjoint Hamiltonian paths in a complete graph. Also, discussed examples of its applications in different fields. Furthermore, the application of Hamilton path in the DNA sequence has been investigated.

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19

Mukherjee, Pratyusa, Hitendra Garg, Chittaranjan Pradhan, Soumik Ghosh, Subrata Chowdhury, and Gautam Srivastava. "Best Fit DNA-Based Cryptographic Keys: The Genetic Algorithm Approach." Sensors 22, no. 19 (2022): 7332. http://dx.doi.org/10.3390/s22197332.

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DNA (Deoxyribonucleic Acid) Cryptography has revolutionized information security by combining rigorous biological and mathematical concepts to encode original information in terms of a DNA sequence. Such schemes are crucially dependent on corresponding DNA-based cryptographic keys. However, owing to the redundancy or observable patterns, some of the keys are rendered weak as they are prone to intrusions. This paper proposes a Genetic Algorithm inspired method to strengthen weak keys obtained from Random DNA-based Key Generators instead of completely discarding them. Fitness functions and the a

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20

Verma, Archana, Mr R.K.Bharti, and Prof R. K. Singh. "DNA sequence comparison based on Tabular Representation." INTERNATIONAL JOURNAL OF COMPUTERS & TECHNOLOGY 4, no. 1 (2013): 172–75. http://dx.doi.org/10.24297/ijct.v4i1c.3121.

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DNA sequence comparison remains as one of the critical steps in the analysis of phylogenetic relationships between species. In order to get quantitative comparison, we want to devise an algorithm that would use the tabular representation of DNA sequences. The tabular approach of representation captures the essence of the base composition and distribution of the sequence. In this contribution, we take the tabular notation for DNA sequences and then these tables are compared to find the similarity/dissimilarity measure of the sequences. We have developed algorithms for comparing DNA sequences. T

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21

Selvi, J. Helen Arokia, and T. Rajendran. "DNA Encoding and Chaos based Image Encryption Technique for Cloud Storage and Communications." Indian Journal Of Science And Technology 18, no. 9 (2025): 734–44. https://doi.org/10.17485/ijst/v18i9.3557.

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Objectives: To suggest an image encryption system that uses DNA encoding and chaotic maps with SHA -512 secret key to provide a secure, efficient, and deterministic mechanism for protecting digital RGB images from unwanted access, manipulation during transmission and cloud storage. Methods: This strategy uses the distinctive features of DNA encoding and chaotic systems to improve image encryption performance. The hybrid technique in the present study uses DNA Encoding with 4 rules and a chaotic mechanism with SHA-512 secret key for image encryption. This technique is compared with Advanced Enc

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22

Wang, Jocelyn, Erica Benedetti, Lucas Bethge, et al. "DNA vs. Mirror-Image DNA: A Universal Approach to Tune the Absolute Configuration in DNA-Based Asymmetric Catalysis." Angewandte Chemie 125, no. 44 (2013): 11760–63. http://dx.doi.org/10.1002/ange.201306232.

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23

Wang, Jocelyn, Erica Benedetti, Lucas Bethge, et al. "DNA vs. Mirror-Image DNA: A Universal Approach to Tune the Absolute Configuration in DNA-Based Asymmetric Catalysis." Angewandte Chemie International Edition 52, no. 44 (2013): 11546–49. http://dx.doi.org/10.1002/anie.201306232.

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24

Ambrosetti, Elena, Giulio Bernardinelli, Ian T. Hoffecker, et al. "A DNA Nanoassembly-Based Approach to Map Membrane Protein Nanoenvironments." Biophysical Journal 120, no. 3 (2021): 273a—274a. http://dx.doi.org/10.1016/j.bpj.2020.11.1741.

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25

Wu, Jiadong, Chunlei Chen, and Bo Hong. "A GPU-Based Approach to Accelerate Computational Protein-DNA Docking." Computing in Science & Engineering 14, no. 3 (2012): 20–29. http://dx.doi.org/10.1109/mcse.2011.118.

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26

Di Pinto, Angela, Valentina Terio, Patrizia Marchetti, et al. "DNA-based approach for species identification of goat-milk products." Food Chemistry 229 (August 2017): 93–97. http://dx.doi.org/10.1016/j.foodchem.2017.02.067.

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27

Puri, Neelu, Mark S. Eller, H. Randolph Byers, Sarah Dykstra, John Kubera, and Barbara A. Gilchrest. "Telomere‐based DNA damage responses: a new approach to melanoma." FASEB Journal 18, no. 12 (2004): 1373–81. http://dx.doi.org/10.1096/fj.04-1774com.

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28

Han, Min Su, Abigail K. R. Lytton-Jean, and Chad A. Mirkin. "A Gold Nanoparticle Based Approach for Screening Triplex DNA Binders." Journal of the American Chemical Society 128, no. 15 (2006): 4954–55. http://dx.doi.org/10.1021/ja0606475.

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29

Chen, Jiun-Shyan, Hailong Teng, and Aiichiro Nakano. "Wavelet-based multi-scale coarse graining approach for DNA molecules." Finite Elements in Analysis and Design 43, no. 5 (2007): 346–60. http://dx.doi.org/10.1016/j.finel.2006.12.004.

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30

Tu, Xiaomin, and Ming Zheng. "A DNA-based approach to the carbon nanotube sorting problem." Nano Research 1, no. 3 (2008): 185–94. http://dx.doi.org/10.1007/s12274-008-8022-7.

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31

Jin, Y., G. E. Zouein, and S. C. Y. Lu. "A synthetic DNA based approach to design of adaptive systems." CIRP Annals 58, no. 1 (2009): 153–56. http://dx.doi.org/10.1016/j.cirp.2009.03.064.

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32

Xie, Hua, Bowei Li, Jianhua Qin, Zhende Huang, Yisheng Zhu, and Bingcheng Lin. "A splicing model-based DNA-computing approach on microfluidic chip." ELECTROPHORESIS 30, no. 20 (2009): 3514–18. http://dx.doi.org/10.1002/elps.200900323.

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33

Popov, Vladimir. "An Approach to Design of DNA Smart Programmable Membranes." Advanced Materials Research 934 (May 2014): 173–76. http://dx.doi.org/10.4028/www.scientific.net/amr.934.173.

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DNA molecules can be considered as a smart material. In particular, synthetic DNA can reliably self-organize. In this paper, we consider an approach to design of active DNA membranes with two stable states. Our approach is based on the usage of SAT-solvers to find proper set of DNA tiles.

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34

Frigerio, Jessica, Giulia Agostinetto, Valerio Mezzasalma, Fabrizio De Mattia, Massimo Labra, and Antonia Bruno. "DNA-Based Herbal Teas’ Authentication: An ITS2 and psbA-trnH Multi-Marker DNA Metabarcoding Approach." Plants 10, no. 10 (2021): 2120. http://dx.doi.org/10.3390/plants10102120.

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Medicinal plants have been widely used in traditional medicine due to their therapeutic properties. Although they are mostly used as herbal infusion and tincture, employment as ingredients of food supplements is increasing. However, fraud and adulteration are widespread issues. In our study, we aimed at evaluating DNA metabarcoding as a tool to identify product composition. In order to accomplish this, we analyzed fifteen commercial products with DNA metabarcoding, using two barcode regions: psbA-trnH and ITS2. Results showed that on average, 70% (44–100) of the declared ingredients have been

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35

Heredia, Frances L., Abiel Roche-Lima, and Elsie I. Parés-Matos. "A novel artificial intelligence-based approach for identification of deoxynucleotide aptamers." PLOS Computational Biology 17, no. 8 (2021): e1009247. http://dx.doi.org/10.1371/journal.pcbi.1009247.

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The selection of a DNA aptamer through the Systematic Evolution of Ligands by EXponential enrichment (SELEX) method involves multiple binding steps, in which a target and a library of randomized DNA sequences are mixed for selection of a single, nucleotide-specific molecule. Usually, 10 to 20 steps are required for SELEX to be completed. Throughout this process it is necessary to discriminate between true DNA aptamers and unspecified DNA-binding sequences. Thus, a novel machine learning-based approach was developed to support and simplify the early steps of the SELEX process, to help discrimin

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36

Abdullah, Abdullah A., Adel S. Eesa, and Ahmed M. Abdo. "New Data Hiding Approach Based on Biological Functionality of DNA Sequence." Science Journal of University of Zakho 7, no. 4 (2019): 184–89. http://dx.doi.org/10.25271/sjuoz.2019.7.4.647.

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Data hiding or steganography has been used ever since a secret message was needed to be transferred. Data hiding methods need a medium to be cover for secret message that is to be sent. Different mediums are used such as image, video, audio, and last decade the deoxyribose nucleic acid (DNA). In this paper, a new data hiding approach based on the DNA sequence is proposed. Unlike many existing methods, the proposed method does not change the biological functionality of the DNA reference sequence when the sequence is translated into amino acids. The proposed method is consisting of two steps: th

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37

Habib, Md Mortuza, Ruddro Roy, Md Mojidul Islam, Mehedi Hassan, Md Muztahidul Islam, and Md Biplob Hossain. "Study of Graphene-MoS2 Based SPR Biosensor with Graphene Based SPR Biosensor: Comparative Approach." International Journal of Natural Sciences Research 7, no. 1 (2019): 1–9. http://dx.doi.org/10.18488/journal.63.2019.71.1.9.

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In this paper, we compare the sensitivity of graphene-MoS2 based surface plasmon resonance (SPR) biosensor to graphene based SPR biosensor. Here, graphene is used as biomolecular recognition element (BRE) because of its high adsorption ability and optical characteristics which helps to improve sensor sensitivity, on the other hand MoS2 is used for it has larger band gap, high fluroscence quenching ability, higher optical absorption efficiency which improves further sensor sensitivity. In DNA hybridization event, numerically achieved results show that single layer of graphene-MoS2 based SPR bio

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38

Muttaqin, Muhammad Rafi, Yeni Herdiyeni, Agus Buono, Karlisa Priandana, Iskandar Zulkarnaen Siregar, and Wisnu Ananta Kusuma. "Biological constraint in digital data encoding: A DNA based approach for image representation." International Journal of Advances in Intelligent Informatics 11, no. 3 (2025): 379. https://doi.org/10.26555/ijain.v11i3.1747.

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Digital data encoding is crucial for communication and data storage, but conventional techniques, such as ASCII and binary coding, have drawbacks in terms of processing speed and storage capacity. A potential substitute with parallel processing and high-capacity storage is DNA-based data encoding. The goal of this research is to develop a digital data encoding technique based on DNA, while considering biological constraints such as homopolymer and GC-content. The process involves converting image pixel values into binary format, followed by encoding into DNA sequences, ensuring they meet biolo

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39

Niu, Ling Ling, and Ann M. Fallon. "Retrieval of Flanking DNA Using a PCR-Based Approach with Restriction Enzyme-Digested Genomic DNA Template." BioTechniques 26, no. 4 (1999): 630–34. http://dx.doi.org/10.2144/99264bm08.

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40

Pang, Lanlan, Jishan Li, Jianhui Jiang, Guoli Shen, and Ruqin Yu. "DNA point mutation detection based on DNA ligase reaction and nano-Au amplification: A piezoelectric approach." Analytical Biochemistry 358, no. 1 (2006): 99–103. http://dx.doi.org/10.1016/j.ab.2006.06.038.

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41

Jain, Anchal, Pooja Agarwal, Rashi Jain, and Vyomesh Singh. "Chaotic Image Encryption Technique using S-box based on DNA Approach." International Journal of Computer Applications 92, no. 13 (2014): 30–34. http://dx.doi.org/10.5120/16070-5225.

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42

Zhang, Guo-Jun. "A novel approach to Au nanoparticle-based identification of DNA nanoarrays." Frontiers in Bioscience 12, no. 8-12 (2007): 4773. http://dx.doi.org/10.2741/2425.

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43

Rahmani, Mohamed Elhadi, Abdelmalek Amine, and Reda Mohamed Hamou. "Bagging Approach for Medical Plants Recognition Based on Their DNA Sequences." International Journal of Social Ecology and Sustainable Development 9, no. 4 (2018): 45–60. http://dx.doi.org/10.4018/ijsesd.2018100103.

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Many drugs in modern medicines originate from plants and the first step in drug production, is the recognition of plants needed for this purpose. This article presents a bagging approach for medical plants recognition based on their DNA sequences. In this work, the authors have developed a system that recognize DNA sequences of 14 medical plants, first they divided the 14-class data set into bi class sub-data sets, then instead of using an algorithm to classify the 14-class data set, they used the same algorithm to classify the sub-data sets. By doing so, they have simplified the problem of cl

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44

Hegarty, Bridget, Annabelle Pan, Ulla Haverinen-Shaughnessy, Richard Shaughnessy, and Jordan Peccia. "DNA Sequence-Based Approach for Classifying the Mold Status of Buildings." Environmental Science & Technology 54, no. 24 (2020): 15968–75. http://dx.doi.org/10.1021/acs.est.0c03904.

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45

Smolka, Bogdan, Konstantinos N. Plataniotis, Rastislav Lukac, and Anastasios N. Venesanopoulos. "Noise reduction in DNA microarray images based on digital path approach." IFAC Proceedings Volumes 36, no. 15 (2003): 17–22. http://dx.doi.org/10.1016/s1474-6670(17)33465-1.

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Veigas, Bruno, Carla Portugal, Rita Valério, Elvira Fortunato, João G. Crespo, and Pedro V. Baptista. "Scalable approach for the production of functional DNA based gold nanoprobes." Journal of Membrane Science 492 (October 2015): 528–35. http://dx.doi.org/10.1016/j.memsci.2015.06.042.

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47

Chakrabarti, Rajarshi. "Bubble dynamics in double stranded DNA: A Rouse chain based approach." Chemical Physics Letters 502, no. 1-3 (2011): 107–11. http://dx.doi.org/10.1016/j.cplett.2010.12.014.

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48

Kobayashi, Hiroko, Anthony A. Horner, Elena Martin-Orozco, and Eyal Raz. "Pre-priming: a novel approach to DNA-based vaccination and immunomodulation." Springer Seminars in Immunopathology 22, no. 1-2 (2000): 85–96. http://dx.doi.org/10.1007/s002810000026.

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Li, Dafa, Xiangrong Li, Hongtao Huang, and Xinxin Li. "The surface-based approach for DNA computation is unreliable for SAT." Biosystems 82, no. 1 (2005): 20–25. http://dx.doi.org/10.1016/j.biosystems.2005.05.007.

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Bakar, Rohani Binti Abu, Junzo Watada, and Witold Pedrycz. "DNA approach to solve clustering problem based on a mutual order." Biosystems 91, no. 1 (2008): 1–12. http://dx.doi.org/10.1016/j.biosystems.2007.06.002.

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