Relevant bibliographies by topics / DNA binding

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  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers
  6. Reports

Academic literature on the topic 'DNA binding'

Author: Grafiati
Published: 4 June 2021
Last updated: 25 July 2025

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Journal articles on the topic "DNA binding"

1

PRENDERGAST, GEORGE, and EDWARD B. ZIFF. "DNA-binding motif." Nature 341, no. 6241 (1989): 392. http://dx.doi.org/10.1038/341392a0.

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Zilliacus, J., K. Dahlman-Wright, A. Wright, J. A. Gustafsson, and J. Carlstedt-Duke. "DNA binding specificity of mutant glucocorticoid receptor DNA-binding domains." Journal of Biological Chemistry 266, no. 5 (1991): 3101–6. http://dx.doi.org/10.1016/s0021-9258(18)49959-0.

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ZILLIACUS, JOHANNA, ANTHONY P. H. WRIGHT, ULF NORINDER, and JAN-ÅKE GUSTAFSSON. "DNA-Binding Specificity of Mutant Glucocorticoid Receptor DNA-Binding Domains." Annals of the New York Academy of Sciences 684, no. 1 Zinc-Finger P (1993): 253–56. http://dx.doi.org/10.1111/j.1749-6632.1993.tb32301.x.

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Dashwood, R. H., R. D. Combes, and J. Ashby. "DNA-binding studies with 6BT and 5I: implications for DNA-binding/carcinogenicity and DNA-binding/mutagenicity correlations." Mutation Research/Fundamental and Molecular Mechanisms of Mutagenesis 198, no. 1 (1988): 61–68. http://dx.doi.org/10.1016/0027-5107(88)90040-1.

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Nafisi, Shohreh, Maryam Adelzadeh, Zeinab Norouzi, and Mohammad Nabi Sarbolouki. "Curcumin Binding to DNA and RNA." DNA and Cell Biology 28, no. 4 (2009): 201–8. http://dx.doi.org/10.1089/dna.2008.0840.

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Nafisi, Shohreh, Mahyar Bonsaii, Valerie Alexis, and James Glick. "Binding of 2-Acetylaminofluorene to DNA." DNA and Cell Biology 30, no. 11 (2011): 955–62. http://dx.doi.org/10.1089/dna.2011.1229.

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Kashanian, Soheila, Sanaz Javanmardi, Arash Chitsazan, Kobra Omidfar, and Maliheh Paknejad. "DNA-Binding Studies of Fluoxetine Antidepressant." DNA and Cell Biology 31, no. 7 (2012): 1349–55. http://dx.doi.org/10.1089/dna.2012.1657.

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HOLTH, LAUREL T., JIAN-MIN SUN, AMANDA S. COUTTS, LEIGH C. MURPHY, and JAMES R. DAVIE. "Estrogen Receptor Diminishes DNA-Binding Activities of Chicken GATA-1 and CACCC-Binding Proteins." DNA and Cell Biology 16, no. 12 (1997): 1477–82. http://dx.doi.org/10.1089/dna.1997.16.1477.

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Kashanian, Soheila, and Sahar Heidary Zeidali. "DNA Binding Studies of Tartrazine Food Additive." DNA and Cell Biology 30, no. 7 (2011): 499–505. http://dx.doi.org/10.1089/dna.2010.1181.

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de Souza, Natalie. "The DNA-binding landscape." Nature Methods 7, no. 4 (2010): 254–55. http://dx.doi.org/10.1038/nmeth0410-254a.

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Dissertations / Theses on the topic "DNA binding"

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Pérez-Breva, Luis. "DNA binding economies." Thesis, Massachusetts Institute of Technology, 2007. http://hdl.handle.net/1721.1/42057.

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Thesis (Ph. D.)--Massachusetts Institute of Technology, Dept. of Electrical Engineering and Computer Science, 2007.<br>This electronic version was submitted by the student author. The certified thesis is available in the Institute Archives and Special Collections.<br>Includes bibliographical references (p. 195-204).<br>This thesis develops a new scalable modeling framework at the interface of game theory and machine learning to recover economic structures from limited slices of data. Inference using economic models has broad applicability in machine learning. Economic structures underlie a su
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Umurtak, H. B. "Studies on DNA-binding peptides]." Thesis, University of Southampton, 1989. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.235192.

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Pokhrel, Pujan. "Prediction of DNA-Binding Proteins and their Binding Sites." ScholarWorks@UNO, 2018. https://scholarworks.uno.edu/honors_theses/114.

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DNA-binding proteins play an important role in various essential biological processes such as DNA replication, recombination, repair, gene transcription, and expression. The identification of DNA-binding proteins and the residues involved in the contacts is important for understanding the DNA-binding mechanism in proteins. Moreover, it has been reported in the literature that the mutations of some DNA-binding residues on proteins are associated with some diseases. The identification of these proteins and their binding mechanism generally require experimental techniques, which makes large scale
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Sando, Shinsuke. "RATIONAL DESIGN OF DNA-BINDING MOLECULES AND DNA PHOTOCLEAVERS." 京都大学 (Kyoto University), 2001. http://hdl.handle.net/2433/150700.

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Komori, Hirofumi. "Structural studies on DNA-binding proteins : DNA replication initiator and DNA photolyase." 京都大学 (Kyoto University), 2002. http://hdl.handle.net/2433/150005.

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Geary, Joella Suzanne. "DNA binding proteins of archaeal viruses." Thesis, Montana State University, 2008. http://etd.lib.montana.edu/etd/2008/geary/GearyJ1208.pdf.

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Archaea are single-celled organisms comprising the third domain of life. The Achaeal species Sulfolobus are infected by the Fuselloviridae virus family: SSV1, SSV2, SSV-RH, and SSV-K. The genomes of these viruses have been annotated and contain putative DNA-binding proteins. The purpose of this work is to identify DNA sequences bound by the SSV1 putative DNA-binding protein C43. C43 protein was cloned, expressed, purified, and assayed at various temperatures for interaction with three SSV1 DNA sequences. C43 binds the T5-promoter, T6-promoter, and C43-promoter sequentially and consistently. Ad
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Bisset, Louise Clair. "Fluorescence of a DNA-binding protein." Thesis, University of Newcastle Upon Tyne, 1996. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.320129.

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Bullen, Gemma Anne. "Anthracene tagged biomolecules for DNA binding." Thesis, University of Birmingham, 2015. http://etheses.bham.ac.uk//id/eprint/6369/.

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Within this thesis, the use of anthracene to perform various applications within biomolecules is assessed. Anthracene displays two interesting photo properties which make it an appealing molecule for incorporation; fluorescence and photodimerisation. The former is utilised to develop a single nucleotide polymorphism detection assay which is shown to allow for determination of the base present in a complementary strand of DNA. In addition to this, the photodimerisation properties of anthracene are used within a protein for the first time. This is utilised to develop a photoswitched binding prot
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Weinberg, Richard Lawrence. "The binding of p53 to DNA." Thesis, University of Cambridge, 2004. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.615988.

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Walavalkar, Ninad. "Structural basis of DNA binding complexes." VCU Scholars Compass, 2013. http://scholarscompass.vcu.edu/etd/3162.

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The nucleosome remodeling and deacetylase (NuRD) complex is an abundant deacetylase complex, which couples histone deacetylation and chromatin remodeling ATPase activities, and has a broad cellular and tissue distribution. Although the working model of how this complex forms and functions is not well known, we have demonstrated that the coiled-coil interaction between two proteins (MBD2 and p66α) is critical for DNA methylation dependent gene silencing in vivo. Chapter one: ‘Unique features of the anti-parallel, heterodimeric coiled-coil interaction between methyl-cytosine binding domain 2 (MB
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Books on the topic "DNA binding"

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J, Waring Michael, and Royal Society of Chemistry (Great Britain), eds. Sequence-specific DNA binding agents. RSC Publishing, 2006.

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Oliveira, Marcos T., ed. Single Stranded DNA Binding Proteins. Springer US, 2021. http://dx.doi.org/10.1007/978-1-0716-1290-3.

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Keck, James L., ed. Single-Stranded DNA Binding Proteins. Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-032-8.

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Waring, Michael J., ed. Sequence-specific DNA Binding Agents. Royal Society of Chemistry, 2006. http://dx.doi.org/10.1039/9781847555304.

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K, Docherty, ed. Gene transcription: DNA binding proteins. Wiley, 1996.

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Wibley, Jane Elizabeth. DNA binding proteins: Structures and predictions. University of Manchester, 1996.

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Kevin, Docherty, ed. Gene transcription: DNA binding proteins: Essential techniques. Wiley, 1996.

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Geoff, Kneale G., ed. DNA-protein interactions: Principles and protocols. Humana Press, 1994.

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Preston, Nicola Susan. Structure and DNA binding of HMG boxes. Universityof Portsmouth, School of Biological Sciences, 1996.

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Rodgers, David S. Circular dichroism: Theory and spectroscopy. Nova Science Publishers, 2011.

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Book chapters on the topic "DNA binding"

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ANITA, C., H. BIGGER, and ANTHONY DIPPLE. "Carcinogen-DNA Binding." In ACS Symposium Series. American Chemical Society, 1985. http://dx.doi.org/10.1021/bk-1985-0277.ch015.

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Zhitkovich, Anatoly. "Chromium Binding to DNA." In Encyclopedia of Metalloproteins. Springer New York, 2013. http://dx.doi.org/10.1007/978-1-4614-1533-6_3.

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Marceau, Aimee H. "Functions of Single-Strand DNA-Binding Proteins in DNA Replication, Recombination, and Repair." In Single-Stranded DNA Binding Proteins. Humana Press, 2012. http://dx.doi.org/10.1007/978-1-62703-032-8_1.

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Lambert, Bernard, and Jean-Bernard Le Pecq. "Pharmacology of DNA Binding Drugs." In DNA—Ligand Interactions. Springer US, 1987. http://dx.doi.org/10.1007/978-1-4684-5383-6_9.

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Waring, Michael. "Binding of Antibiotics to DNA." In Novartis Foundation Symposia. John Wiley & Sons, Ltd., 2007. http://dx.doi.org/10.1002/9780470514085.ch9.

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Dang, Chi V., and Linda A. Lee. "DNA Binding Properties of Myc." In c-Myc Function in Neoplasia. Springer Berlin Heidelberg, 1995. http://dx.doi.org/10.1007/978-3-662-22681-0_9.

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Kokubo, Tetsuro. "Chromodomain Helicase DNA Binding (CHD)." In Encyclopedia of Systems Biology. Springer New York, 2013. http://dx.doi.org/10.1007/978-1-4419-9863-7_1619.

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Samson, Rachel, and John N. Reeve. "DNA-Binding Proteins and Chromatin." In Archaea. ASM Press, 2014. http://dx.doi.org/10.1128/9781555815516.ch4.

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Lincoln, Per, L. Marcus Wilhelmsson, and Bengt Nordén. "Chapter 3. Slow DNA Binding." In DNA-targeting Molecules as Therapeutic Agents. Royal Society of Chemistry, 2018. http://dx.doi.org/10.1039/9781788012928-00045.

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Martin, Roger F. "DNA-Binding Bibenzimidazoles as Radioprotectors." In Radioprotectors. CRC Press, 2021. http://dx.doi.org/10.4324/9781003068181-8.

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Conference papers on the topic "DNA binding"

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Huang, Ruiyan, Xian Chen, Wangren Qiu, and Weizhong Lin. "Prediction of Protein-DNA Binding Sites Based on GraphSAGE." In 2024 5th International Conference on Computer, Big Data and Artificial Intelligence (ICCBD+AI). IEEE, 2024. https://doi.org/10.1109/iccbd-ai65562.2024.00009.

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Hu, Guangchun, Ruotong Liu, Fuchong Yuan, et al. "PDR: a language model for predicting protein-DNA binding sites." In Second International Conference on Big Data, Computational Intelligence and Applications (BDCIA 2024), edited by Sos S. Agaian. SPIE, 2025. https://doi.org/10.1117/12.3058868.

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Medina-Ortiz, David, Gabriel Cabas-Mora, Iván Moya, Nicole Soto-García, and Roberto Uribe-Paredes. "RUDEUS: A Machine Learning Classification System to Study DNA-Binding Proteins." In 16th International Conference on Knowledge Discovery and Information Retrieval. SCITEPRESS - Science and Technology Publications, 2024. http://dx.doi.org/10.5220/0012946500003838.

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Wu, Siwen, Jinbo Xu, and Jun-tao Guo. "Prediction of single-stranded DNA binding proteins with protein language model." In 2024 IEEE International Conference on Bioinformatics and Biomedicine (BIBM). IEEE, 2024. https://doi.org/10.1109/bibm62325.2024.10821845.

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Song, Jiazhi, Chuyi Song, Chenrui Zhang, and Jingqing Jiang. "A Channel-Attention Convolutional Neural Network for Protein-DNA Binding Residue Prediction." In 2024 International Conference on New Trends in Computational Intelligence (NTCI). IEEE, 2024. https://doi.org/10.1109/ntci64025.2024.10776294.

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Srhar, Sania, Amna Arshad, and Ahsan Raza. "Protien-DNA binding sites Prediction." In 2021 International Conference on Innovative Computing (ICIC). IEEE, 2021. http://dx.doi.org/10.1109/icic53490.2021.9692990.

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Joby, George, K. Vrinda, Govindan Chandana, Surendran Arundhathy, and Biju Avany. "DNA RNA binding protein prediction." In MULTIMEDIA UNIVERSITY ENGINEERING CONFERENCE 2023 (MECON2023). AIP Publishing, 2024. http://dx.doi.org/10.1063/5.0230564.

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Bhardwaj, N., R. E. Langlois, Guijun Zhao, and Hui Lu. "Structure Based Prediction of Binding Residues on DNA-binding Proteins." In 2005 IEEE Engineering in Medicine and Biology 27th Annual Conference. IEEE, 2005. http://dx.doi.org/10.1109/iembs.2005.1617004.

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Fan, Yue, Mark A. Kon, and Charles DeLisi. "Ensemble Machine Methods for DNA Binding." In 2008 Seventh International Conference on Machine Learning and Applications. IEEE, 2008. http://dx.doi.org/10.1109/icmla.2008.114.

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Andersson, Johanna, Shiming Li, Per Lincoln, and Joakim Andréasson. "Light controlled DNA-binding of spiropyrans." In XIVth Symposium on Chemistry of Nucleic Acid Components. Institute of Organic Chemistry and Biochemistry, Academy of Sciences of the Czech Republic, 2008. http://dx.doi.org/10.1135/css200810305.

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Reports on the topic "DNA binding"

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Hanke, Andreas. DNA Conforming Dynamics and Protein Binding. Defense Technical Information Center, 2006. http://dx.doi.org/10.21236/ada461014.

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Chiang, Shu-Yuan. DNA Binding Drugs Targeting the Regulatory DNA Binding Site of the ETS Domain Family Transcription Factor. Defense Technical Information Center, 1998. http://dx.doi.org/10.21236/ada352305.

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Wood, Sheila J. Predictive Binding Parameters for DNA-DNA Association within a Fluid Stream. Defense Technical Information Center, 1997. http://dx.doi.org/10.21236/ada328050.

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Hanke, Andreas. Regulation of DNA Metabolism by DNA-Binding Proteins Probed by Single Molecule Spectroscopy. Defense Technical Information Center, 2006. http://dx.doi.org/10.21236/ada459264.

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Wang, Yong-Dong. DNA Binding Drugs Targeting the Regulatory DNA Binding Site of the ETS Domain Family Transcription Factor Associated With Human Breast Cancer. Defense Technical Information Center, 2000. http://dx.doi.org/10.21236/ada392560.

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Wang, Yong-Dong. DNA Binding Drugs Targeting the Regulatory DNA Binding Site of the ETS Domain Family Transcription Factor Associated With Human Breast Cancer. Defense Technical Information Center, 1999. http://dx.doi.org/10.21236/ada381309.

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Yaswen, Paul. Functional Analysis of BORIS, A Novel DNA Binding Protein. Defense Technical Information Center, 2006. http://dx.doi.org/10.21236/ada448330.

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Yaswen, Paul. Functional Analysis of BORIS, a Novel DNA Binding Protein. Defense Technical Information Center, 2005. http://dx.doi.org/10.21236/ada435433.

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Chen, Fu-Ming. Sequence-Specific and Synergistic Binding of Drugs to DNA. Defense Technical Information Center, 1995. http://dx.doi.org/10.21236/ada306436.

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Chen, Fu-Ming. Sequence-Specific and Synergistic Binding of Drugs to DNA. Defense Technical Information Center, 1999. http://dx.doi.org/10.21236/ada392011.

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