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Journal articles on the topic 'DNA History'

Author: Grafiati

Published: 4 June 2021

Last updated: 6 February 2022

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1

Brosh, Robert M., and Steven W. Matson. "History of DNA Helicases." Genes 11, no. 3 (2020): 255. http://dx.doi.org/10.3390/genes11030255.

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Since the discovery of the DNA double helix, there has been a fascination in understanding the molecular mechanisms and cellular processes that account for: (i) the transmission of genetic information from one generation to the next and (ii) the remarkable stability of the genome. Nucleic acid biologists have endeavored to unravel the mysteries of DNA not only to understand the processes of DNA replication, repair, recombination, and transcription but to also characterize the underlying basis of genetic diseases characterized by chromosomal instability. Perhaps unexpectedly at first, DNA helicases have arisen as a key class of enzymes to study in this latter capacity. From the first discovery of ATP-dependent DNA unwinding enzymes in the mid 1970’s to the burgeoning of helicase-dependent pathways found to be prevalent in all kingdoms of life, the story of scientific discovery in helicase research is rich and informative. Over four decades after their discovery, we take this opportunity to provide a history of DNA helicases. No doubt, many chapters are left to be written. Nonetheless, at this juncture we are privileged to share our perspective on the DNA helicase field – where it has been, its current state, and where it is headed.

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2

Tyagi, P., and M. Bhide. "History of DNA Sequencing." Folia Veterinaria 64, no. 2 (2020): 66–73. http://dx.doi.org/10.2478/fv-2020-0019.

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AbstractThe nucleotides are the building blocks of nucleic acids and determining their sequential arrangement had always been an integral part of biological research. Since the past seven decades, researchers from multi-disciplinary fields has been working together to innovate the best sequencing methods. Various methods had been proposed, from some oligonucleotides to the whole genome sequencing, and the growth had gone through adolescence to the mature phase where it is now capable of sequencing the whole genome at a low cost and within a short time frame. DNA sequencing has become a key technology in every discipline of biology and medicine. This review aims to highlight the evolution of DNA sequencing techniques and the machines used, including their principles and key achievements.

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3

Slatkin, Montgomery, and Fernando Racimo. "Ancient DNA and human history." Proceedings of the National Academy of Sciences 113, no. 23 (2016): 6380–87. http://dx.doi.org/10.1073/pnas.1524306113.

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We review studies of genomic data obtained by sequencing hominin fossils with particular emphasis on the unique information that ancient DNA (aDNA) can provide about the demographic history of humans and our closest relatives. We concentrate on nuclear genomic sequences that have been published in the past few years. In many cases, particularly in the Arctic, the Americas, and Europe, aDNA has revealed historical demographic patterns in a way that could not be resolved by analyzing present-day genomes alone. Ancient DNA from archaic hominins has revealed a rich history of admixture between early modern humans, Neanderthals, and Denisovans, and has allowed us to disentangle complex selective processes. Information from aDNA studies is nowhere near saturation, and we believe that future aDNA sequences will continue to change our understanding of hominin history.

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4

Reardon, Jenny, and Kim TallBear. "“Your DNA Is Our History”." Current Anthropology 53, S5 (2012): S233—S245. http://dx.doi.org/10.1086/662629.

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5

Cooper, Robert A. "Ancient DNA & Human History." American Biology Teacher 81, no. 5 (2019): 378–79. http://dx.doi.org/10.1525/abt.2019.81.5.378.

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6

Johannes, Frank. "DNA methylation makes mutational history." Nature Plants 5, no. 8 (2019): 772–73. http://dx.doi.org/10.1038/s41477-019-0491-z.

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7

Kannan, Sampath K., and Tandy J. Warnow. "Inferring Evolutionary History From DNA Sequences." SIAM Journal on Computing 23, no. 4 (1994): 713–37. http://dx.doi.org/10.1137/s0097539791222171.

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8

Dhillon, Manpreet Singh. "Pre-History of DNA ‘Fingerprinting’ in India." Research Journal of Humanities and Social Sciences 10, no. 3 (2019): 882. http://dx.doi.org/10.5958/2321-5828.2019.00145.1.

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9

Strasser, Bruno J., and Ulf Lagerkvist. "DNA: A History of a Thousand Heroes." BioScience 49, no. 3 (1999): 241. http://dx.doi.org/10.2307/1313519.

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10

Vicente, Mário, and Carina M. Schlebusch. "African population history: an ancient DNA perspective." Current Opinion in Genetics & Development 62 (June 2020): 8–15. http://dx.doi.org/10.1016/j.gde.2020.05.008.

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11

Mardis, Elaine R. "A brief history of (DNA sequencing) time." Nature Reviews Genetics 8, S1 (2007): S21. http://dx.doi.org/10.1038/nrg2240.

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12

Williamson, Don. "The curious history of yeast mitochondrial DNA." Nature Reviews Genetics 3, no. 6 (2002): 475–81. http://dx.doi.org/10.1038/nrg814.

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13

Oshida, Shigemi, Jian Tie, and Etsuko Iwakami. "History of DNA Analysis in Forensic Sciences." Journal of Nihon University Medical Association 68, no. 5 (2009): 278–83. http://dx.doi.org/10.4264/numa.68.278.

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14

Kanchan, Tanuj, Kewal Krishan, and Magdy A. Kharoshah. "DNA analysis for mysteries buried in history." Egyptian Journal of Forensic Sciences 5, no. 3 (2015): 73–74. http://dx.doi.org/10.1016/j.ejfs.2015.05.005.

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15

Woodruff, R. C. "Transposable DNA elements and life history traits." Genetica 86, no. 1-3 (1992): 143–54. http://dx.doi.org/10.1007/bf00133717.

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16

Wooding, S. "PRoMT: inferring demographic history from DNA sequences." Bioinformatics 16, no. 3 (2000): 298–99. http://dx.doi.org/10.1093/bioinformatics/16.3.298.

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17

Callaway, Ewen. "Ancient DNA reveals secrets of human history." Nature 476, no. 7359 (2011): 136–37. http://dx.doi.org/10.1038/476136a.

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18

Pennisi, E. "Using DNA to Reveal a Mosquito's History." Science 331, no. 6020 (2011): 1006–7. http://dx.doi.org/10.1126/science.331.6020.1006.

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19

Mao, Steve. "Writing a cell's history in its DNA." Science 360, no. 6385 (2018): 166.10–168. http://dx.doi.org/10.1126/science.360.6385.166-j.

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20

Dalton, Rex. "Ancient DNA set to rewrite human history." Nature 465, no. 7295 (2010): 148. http://dx.doi.org/10.1038/465148a.

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21

Nangreave, Jeanette, Dongran Han, Yan Liu, and Hao Yan. "DNA origami: a history and current perspective." Current Opinion in Chemical Biology 14, no. 5 (2010): 608–15. http://dx.doi.org/10.1016/j.cbpa.2010.06.182.

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22

Ooi, Steen K. T., and Timothy H. Bestor. "The Colorful History of Active DNA Demethylation." Cell 133, no. 7 (2008): 1145–48. http://dx.doi.org/10.1016/j.cell.2008.06.009.

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23

Holliday, Robin. "Roots: The history of the DNA heteroduplex." BioEssays 12, no. 3 (1990): 133–42. http://dx.doi.org/10.1002/bies.950120309.

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24

Gužvić, Miodrag. "The History of DNA Sequencing / ISTORIJAT SEKVENCIRANJA DNK." Journal of Medical Biochemistry 32, no. 4 (2013): 301–12. http://dx.doi.org/10.2478/jomb-2014-0004.

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Summary During the last decade, the cost of DNA sequencing technologies has decreased several orders of magnitude, with the proportional increase of speed and throughput. Human Genome Project took almost 15 years to complete the sequence of the human genome. With the second and third generation technologies, this can be done in the matter of days or hours. This progress and availability of sequencing instruments to virtually every researcher leads to replacing of many techniques with DNA sequencing and opens new venues of research. DNA sequencing is used to investigate basic biological phenomena, and is probably going to be increasingly used in the context of health care (preimplantation diagnostics, oncology, infectious diseases). Current trends are aiming towards the price of 1000$ for sequencing of one human genome. Without any doubt, we can expect improvement of existing and the development of fourth generation technologies in the coming years.

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25

Ajmone-Marsan, P. "DNA footprints of livestock domestication and evolutionary history." Advances in Animal Biosciences 1, no. 3 (2011): 538–45. http://dx.doi.org/10.1017/s204047001000542x.

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The observation of animal and plant breeding greatly influenced Darwin's thought. During the maturation of his theory of evolution, he realised that anthropogenic selection was the driving force shaping domestic animal phenotypes to meet human needs. A concept that was transferred to natural species after the reading of Malthus’ book on the struggle for existence. After the definition of his theory, Darwin continuously searched in domestic plant and animals confirmation of his hypotheses on the transmission of traits and evolution of species. He also observed that some morphological and physiological traits were shared among unrelated domestic animal species but were absent in the wild ancestors. The Russian scientist Dmitri Belyaev proved that these traits emerged as a consequence of domestication by recording their appearance in silver fox selected for tame behaviour, an experiment that is ongoing since about 50 years. Nowadays, genomic technologies allow scientists to explore the molecular basis of these traits and to reconstruct the evolutionary history of domestic animals. The availability of high-density single nucleotide polymorphisms panels permits the detection of signatures left by natural and artificial selection along the genome of domestic animals. The analysis of genomic and mitochondrial DNA contributes substantial information for the identification of sites of primary domestication, Neolithic routes of world colonisation and later voyages linked to human migration events. The understanding of all changes occurring following domestication and anthropogenic selection may help in understanding natural selection and molecular evolution occurring in all living organisms.

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26

Tyler-Smith, C., T. Zerjal, Y. Xue, et al. "Y-chromosomal DNA variation and human population history." International Congress Series 1239 (January 2003): 281–82. http://dx.doi.org/10.1016/s0531-5131(02)00805-1.

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27

Dempsey, Alan, and Andrew G. Bowie. "Innate immune recognition of DNA: A recent history." Virology 479-480 (May 2015): 146–52. http://dx.doi.org/10.1016/j.virol.2015.03.013.

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28

Stevens, Hallam. "Genetimes and lifetimes: DNA, new media, and history." Memory Studies 8, no. 4 (2015): 390–406. http://dx.doi.org/10.1177/1750698015581074.

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29

Upton, Mark. "Unknown facet of next gen DNA sequencing history." Genomics 110, no. 4 (2018): 277–79. http://dx.doi.org/10.1016/j.ygeno.2017.12.012.

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30

Braun, Robyn. "Truth Machine: The Contentious History of DNA Fingerprinting." Annals of Science 67, no. 1 (2010): 145–47. http://dx.doi.org/10.1080/00033790902981254.

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31

Friedberg, Errol C. "A brief history of the DNA repair field." Cell Research 18, no. 1 (2007): 3–7. http://dx.doi.org/10.1038/cr.2007.113.

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32

Milius, Susan. "Cat history: DNA study finds domestic-cat kin." Science News 171, no. 26 (2009): 403–4. http://dx.doi.org/10.1002/scin.2007.5591712603.

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33

Morozova, Irina, Alexey Evsyukov, Andrey Kon'kov, Alexandra Grosheva, Olga Zhukova, and Sergey Rychkov. "Russian ethnic history inferred from mitochondrial DNA diversity." American Journal of Physical Anthropology 147, no. 3 (2011): 341–51. http://dx.doi.org/10.1002/ajpa.21649.

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34

ISHIKAWA, SHIZUKO. "History of cultivation apples carved in mitochondrion DNA." Kagaku To Seibutsu 31, no. 9 (1993): 609–11. http://dx.doi.org/10.1271/kagakutoseibutsu1962.31.609.

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35

Whitaker, Amy M., та Bret D. Freudenthal. "History of DNA polymerase β X-ray crystallography". DNA Repair 93 (вересень 2020): 102928. http://dx.doi.org/10.1016/j.dnarep.2020.102928.

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36

Cho, Irene, Lucas Horn, Tashauna M. Felix, et al. "Age- and Diet-Specific Effects of Variation at S6 Kinase on Life History, Metabolic, and Immune Response Traits in Drosophila melanogaster." DNA and Cell Biology 29, no. 9 (2010): 473–85. http://dx.doi.org/10.1089/dna.2009.0997.

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37

Wang, Dianming, Yiyang Zhang, and Dongsheng Liu. "DNA nanochannels." F1000Research 6 (April 18, 2017): 503. http://dx.doi.org/10.12688/f1000research.10464.1.

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Transmembrane proteins are mostly nanochannels playing a highly important role in metabolism. Understanding their structures and functions is vital for revealing life processes. It is of fundamental interest to develop chemical devices to mimic biological channels. Structural DNA nanotechnology has been proven to be a promising method for the preparation of fine DNA nanochannels as a result of the excellent properties of DNA molecules. This review presents the development history and current situation of three different types of DNA nanochannel: tile-based nanotube, DNA origami nanochannel, and DNA bundle nanochannel.

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38

Marfuah, Siti, Beivy Jonathan Kolondam, and Trina Ekawati Tallei. "Potensi Environmental DNA (e-DNA) Untuk Pemantauan dan Konservasi Keanekaragaman Hayati." JURNAL BIOS LOGOS 11, no. 1 (2021): 75. http://dx.doi.org/10.35799/jbl.11.1.2021.31780.

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(Article History: Received January 6, 2021; Revised February 12, 2021; Accepted February 28, 2021) ABSTRAK Hilangnya spesies dan adanya spesies invasif dalam suatu habitat dapat menjadi ancaman bagi spesies asli dalam satu ekosistem. Untuk itu diperlukan teknik terkini yang mampu mendeteksi keberadaan suatu organisme. Salah satu teknik yang dapat mendeteksi organisme target di lingkungan secara cepat dan akurat yaitu environmental DNA (e-DNA).Tujuan dari ulasan artikel ini yaitu untuk mengeksplorasi kemampuan e-DNA secara ekogenomik untuk pemantauan dan konservasi keanekaragaman hayati. Ulasan artikel ini menggunakan data sekunder yang diperoleh dari berbagai database yang berbasis dalam jaringan. Hasil analisis memperlihatkan bahwa dengan menggunakan pendekatan e-DNA pemantauan dan konsevasi keanekaragaman hayati dapat dideteksi sesuai dengan taksonomi organisme dan penanda molekuler. Penanda molekuler Cytochrome c Oxidase subunit 1 (COI) mampu mendeteksi berbagai spesies baik langka dan invasif. Dengan demikian dapat disimpulkan bahwa pendekatan e-DNA dapat dijadikan sebagai metode untuk pemantauan dan konsevasi keanekaragaman hayati pada berbagai ekosistem.Kata - kata kunci: environmental DNA; keanekaragaman hayati dan konservasi; penanda molekuler ABSTRACTThe loss of species and the presence of invasive species in a habitat can be a threat to native species in an ecosystem. So we need the latest techniques that are able to detect the presence of an organism. One technique that can detect target organisms in the environment quickly and accurately is environmental DNA (e-DNA). The purpose of this review article is to explore the ecogenomic ability of e-DNA for monitoring and conservation of biodiversity. This article reviews using secondary data obtained from various network-based databases. The results of the analysis show that by using the e-DNA approach, monitoring and conservation of biological diversity can be detected according to the taxonomy of organisms and molecular markers. Cytochrome c Oxidase subunit 1 (COI) molecular markers are capable of detecting a variety of both rare and invasive species. Thus it can be concluded that the e-DNA approach can be used as a method for monitoring and conservation of biological diversity in various ecosystems.Keywords: environmental DNA; biodiversity and conservation; molecular markers

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39

Ellis, Joseph J. "Jefferson: Post-DNA." William and Mary Quarterly 57, no. 1 (2000): 125. http://dx.doi.org/10.2307/2674361.

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40

Plomin, Robert, and John Crabbe. "DNA." Psychological Bulletin 126, no. 6 (2000): 806–28. http://dx.doi.org/10.1037/0033-2909.126.6.806.

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41

CAMPANA, M. G., D. L. LISTER, C. M. WHITTEN, et al. "COMPLEX RELATIONSHIPS BETWEEN MITOCHONDRIAL AND NUCLEAR DNA PRESERVATION IN HISTORICAL DNA EXTRACTS*." Archaeometry 54, no. 1 (2011): 193–202. http://dx.doi.org/10.1111/j.1475-4754.2011.00606.x.

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42

Osborne, Daphne J. "Ancient DNA." Endeavour 19, no. 1 (1995): 47. http://dx.doi.org/10.1016/0160-9327(95)90013-6.

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43

Dutfield, Graham, and Uma Suthersanen. "DNA Music." Science & Technology Studies 18, no. 1 (2005): 5–29. http://dx.doi.org/10.23987/sts.55185.

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Patent regulation provides numerous examples of how policy decisions have consequences that run counter to what was intended. One reason that unintended consequences ensue arises from the fact that when powerful and organised business interests consider that a new reform inhibits their economic appropriation opportunities, they seek to make the perceived inadequacies of the law less harmful to their interests. They may achieve this through alternative legal means or by the adoption of new technologies. For certain reasons, regulating DNA patenting is especially vulnerable to unintended consequences. For businesses, one possible alternative to patents is to encode DNA sequences as music and use copyright and trade secrecy rather than patents. Of course, such alternative means of protection can have their own unintended consequences. If we are right in predicting that if molecular biology patenting is suppressed more and more, the legal and technological measures that lock up information will become increasingly attractive to industry, then one should tread very cautiously when reforming the patent system in this field. *Key words*: intellectual property, DNA patenting, biotechnology

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44

Gahlon, Hailey L. "A Brief History and Practical Applications in DNA Extraction." CHIMIA International Journal for Chemistry 74, no. 11 (2020): 907–8. http://dx.doi.org/10.2533/chimia.2020.907.

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In the late 1860s, DNA was first identified by the Swiss physician and biochemist Friedrich Miescher. Since this time, we have solved its structure, learned how DNA divides in our cells, and elucidated molecular mechanisms for the transmission of our hereditary information. Fundamental to all these discoveries is the ability to extract our DNA in high purity. In laboratories today, DNA extraction is a routine practice performed from readily available commercial kits. However, in the late 1800s, DNA extraction was an emerging method that required tedious laboratory approaches.

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45

Heather, James M., and Benjamin Chain. "The sequence of sequencers: The history of sequencing DNA." Genomics 107, no. 1 (2016): 1–8. http://dx.doi.org/10.1016/j.ygeno.2015.11.003.

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46

Wayne, Robert K., Jennifer A. Leonard, and Alan Cooper. "Full of Sound and Fury: History of Ancient DNA." Annual Review of Ecology and Systematics 30, no. 1 (1999): 457–77. http://dx.doi.org/10.1146/annurev.ecolsys.30.1.457.

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47

Barone, Joseph G., Arthur P. Christiano, and W. Steven Ward. "DNA organization in patients with a history of cryptorchidism." Urology 56, no. 6 (2000): 1068–70. http://dx.doi.org/10.1016/s0090-4295(00)00788-3.

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48

Gee, Henry. "Natural History Museum to build DNA database in London." Nature 336, no. 6201 (1988): 707. http://dx.doi.org/10.1038/336707b0.

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49

Glazko, Galina, Vladimir Makarenkov, Jing Liu, and Arcady Mushegian. "Evolutionary history of bacteriophages with double-stranded DNA genomes." Biology Direct 2, no. 1 (2007): 36. http://dx.doi.org/10.1186/1745-6150-2-36.

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50

Raff, Jennifer A., Deborah A. Bolnick, Justin Tackney, and Dennis H. O'Rourke. "Ancient DNA perspectives on American colonization and population history." American Journal of Physical Anthropology 146, no. 4 (2011): 503–14. http://dx.doi.org/10.1002/ajpa.21594.

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