Relevant bibliographies by topics / DNA semantics

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  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers

Academic literature on the topic 'DNA semantics'

Author: Grafiati
Published: 5 June 2025
Last updated: 2 August 2025

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Journal articles on the topic "DNA semantics"

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Petersen, Rasmus L., Matthew R. Lakin, and Andrew Phillips. "A strand graph semantics for DNA-based computation." Theoretical Computer Science 632 (June 2016): 43–73. http://dx.doi.org/10.1016/j.tcs.2015.07.041.

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JI, SUNGCHUL. "The Linguistics of DNA: Words, Sentences, Grammar, Phonetics, and Semantics." Annals of the New York Academy of Sciences 870, no. 1 MOLECULAR STR (1999): 411–17. http://dx.doi.org/10.1111/j.1749-6632.1999.tb08916.x.

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Ciobanu, Gabriel, and Eneia Nicolae Todoran. "Correct metric semantics for a language inspired by DNA computing." Concurrency and Computation: Practice and Experience 28, no. 11 (2015): 3042–60. http://dx.doi.org/10.1002/cpe.3585.

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Fellermann, Harold, and Luca Cardelli. "Programming chemistry in DNA-addressable bioreactors." Journal of The Royal Society Interface 11, no. 99 (2014): 20130987. http://dx.doi.org/10.1098/rsif.2013.0987.

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We present a formal calculus, termed the chemtainer calculus , able to capture the complexity of compartmentalized reaction systems such as populations of possibly nested vesicular compartments. Compartments contain molecular cargo as well as surface markers in the form of DNA single strands. These markers serve as compartment addresses and allow for their targeted transport and fusion, thereby enabling reactions of previously separated chemicals. The overall system organization allows for the set-up of programmable chemistry in microfluidic or other automated environments. We introduce a simp
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Baldari, Cosima T. "DNA methylation and TLR9 ligands: Not only a matter of semantics." Immunology Letters 121, no. 1 (2008): 84–85. http://dx.doi.org/10.1016/j.imlet.2008.08.003.

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Li, Hongliang, and Bin Liu. "BioSeq-Diabolo: Biological sequence similarity analysis using Diabolo." PLOS Computational Biology 19, no. 6 (2023): e1011214. http://dx.doi.org/10.1371/journal.pcbi.1011214.

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As the key for biological sequence structure and function prediction, disease diagnosis and treatment, biological sequence similarity analysis has attracted more and more attentions. However, the exiting computational methods failed to accurately analyse the biological sequence similarities because of the various data types (DNA, RNA, protein, disease, etc) and their low sequence similarities (remote homology). Therefore, new concepts and techniques are desired to solve this challenging problem. Biological sequences (DNA, RNA and protein sequences) can be considered as the sentences of “the bo
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Kuska, B. "Bring in da noise, bring in da junk--the semantics of junk DNA." JNCI Journal of the National Cancer Institute 90, no. 15 (1998): 1125–27. http://dx.doi.org/10.1093/jnci/90.15.1125.

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Xue, Guanlan, and Jinglian Chen. "Application of regional culture in wooden furniture styling design based on extension semantics and shape grammar: Taking Su-Style stool as an example." BioResources 20, no. 1 (2024): 248–67. http://dx.doi.org/10.15376/biores.20.1.248-267.

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In view of the current problems of insufficient furniture innovation and uniform styling, this article introduces regional culture to conduct innovative strategic research on existing wooden furniture styling, trying to explore the connection between furniture and culture. Based on the methods of extension semantics and shape grammar, the traditional Chinese furniture Su-style stool is used as an example to demonstrate its feasibility. This work mainly applies extension semantics to illustrate regional culture and combines shape grammar to integrate the cultural elements and furniture shapes,
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Zou, Wei Hua. "Analyze the Method of Generative Design in New Chinese Furniture." Advanced Materials Research 433-440 (January 2012): 1582–86. http://dx.doi.org/10.4028/www.scientific.net/amr.433-440.1582.

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Compared with the method of common design, the generative design that considering more application of semantics is more suitable for the design of new Chinese furniture. Make a comprehensive survey upon the design example in new Chinese furniture, its generative design develops mainly towards two directions: One is towards the design about the characteristics of DNA, the design compromising the classic elements in Chinese furniture and modern life style, cultural consciousness, social perception; while the other is about the arrangement pattern of DNA, the design harmonizing the classical form
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Schulte, Marion. "The semantic development of borrowed derivational morphology." Diachronica 36, no. 1 (2019): 66–99. http://dx.doi.org/10.1075/dia.17016.sch.

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Abstract This study investigates the effects of borrowing on the semantics of a derivational suffix. It presents a case study that compares the borrowed Middle English suffix -ery to Middle French -erie, paying special attention to their respective semantic structures and analysing them with semantic maps. The semantic structure of the borrowed suffix -ery is very similar to that of its origin -erie and there is no evidence for semantic reduction as a result of the borrowing process. This stability is linked to sociolinguistic aspects of the contact situation. Substantial semantic changes do o
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Dissertations / Theses on the topic "DNA semantics"

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OriÃ, Reinaldo Barreto. "APOE genotyping and its association with cognitive deficits in children with diarrhea and malnutrition in the Northeast-Brazil." Universidade Federal do CearÃ, 2004. http://www.teses.ufc.br/tde_busca/arquivo.php?codArquivo=20.

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CoordenaÃÃo de AperfeiÃoamento de Pessoal de NÃvel Superior<br>Polymorphisms in the apolipoprotein E (APOE) have constituted the major rationale to identify potential risk groups for developing late-onset Alzheimer's disease and help to predict recovery of cognitive function after brain injury. However, the APOE impact on cognitive development in children living in poor areas of the developing world, where we have discovered profound significant associations of early childhood diarrhea (at 0-2 yo) with lasting impairments of growth, cognition and school performance, is not known. Therefore, we
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Sykulski, Maciej. "Data analysis and modeling in human genomics." Doctoral thesis, 2014.

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Human genomics undergoes fast development thanks to new genome research technologies, such as aCGH (array Comparative Genomic Hybridization), or Next Generation Sequencing. Large amounts of data from patients potentially contain a lot of information about potential diseases, or susceptibility thereto, about mechanism of emergence of genetic diseases, and about mechanisms of evolution. Extracting such information requires careful data processing, constructing of proper statistical models, in order to analyze emerging hypotheses and discriminate between them. The basis for the used methods are a
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Books on the topic "DNA semantics"

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Chuchu, Jaludin, and Jaludin Chuchu. Semantik dan pengajaran bahasa. Dewan Bahasa dan Pustaka Brunei, Kementerian Kebudayaan, Belia dan Sukan, 2008.

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Wijana, I. Dewa Putu. Semantik: Teori dan analisis. Yuma Pustaka, 2008.

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Wijana, I. Dewa Putu. Semantik: Teori dan analisis. Yuma Pustaka, 2008.

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Bakar, Mukhlis Abu. Pengantar sintaksis dan semantik bahasa Melayu. Pustaka Nasional, 2002.

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Muis, Muhammad. Perluasan makna kata dan istilah dalam bahasa Indonesia. Pusat Bahasa, Kementerian Pendidikan Nasional, 2010.

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Wijana, I. Dewa Putu. Analisis wacana pragmatik: Kajian teori dan analisis. 2nd ed. Yuma Pustaka, 2010.

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Sudaryono. Negasi dalam bahasa Indonesia: Suatu tinjauan sintaktik dan semantik. Pusat Pembinaan dan Pengembangan Bahasa, Departemen Pendidikan dan Kebudayaan, 1993.

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Bakar, Mukhlis Abu. Struktur dan makna dalam bahasa: Pengantar sintaksis dan semantik bahasa Melayu. 2nd ed. Pustaka Nasional, 2010.

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Jalaluddin, Nor Hashimah. Semantik dan akal budi Melayu / Nor Hashimah Jalaluddin. Penerbit Universiti Kebangsaan Malaysia, 2014.

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Jalaluddin, Nor Hashimah. Bahasa dalam perniagaan: Satu analisis semantik dan pragmatik. Dewan Bahasa dan Pustaka, 2003.

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Book chapters on the topic "DNA semantics"

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Bechhofer, Sean, Leslie Carr, Carole Goble, Simon Kampa, and Timothy Miles-Board. "The Semantics of Semantic Annotation." In On the Move to Meaningful Internet Systems 2002: CoopIS, DOA, and ODBASE. Springer Berlin Heidelberg, 2002. http://dx.doi.org/10.1007/3-540-36124-3_73.

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Garzon, Max H., Kiran Bobba, and Andrew Neel. "Efficiency and Reliability of Semantic Retrieval in DNA-Based Memories." In DNA Computing. Springer Berlin Heidelberg, 2004. http://dx.doi.org/10.1007/978-3-540-24628-2_15.

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Tsuboi, Yusei, Zuwairie Ibrahim, Nobuyuki Kasai, and Osamu Ono. "DNA Computing Approach to Construction of Semantic Model." In Lecture Notes in Computer Science. Springer Berlin Heidelberg, 2005. http://dx.doi.org/10.1007/11539117_158.

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Tsuboi, Yusei, Zuwairie Ibrahim, and Osamu Ono. "Demonstration of DNA-Based Semantic Model by Using Parallel Overlap Assembly." In Lecture Notes in Computer Science. Springer Berlin Heidelberg, 2005. http://dx.doi.org/10.1007/11538059_59.

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Hristovski, Dimitar, Andrej Kastrin, Borut Peterlin, and Thomas C. Rindflesch. "Combining Semantic Relations and DNA Microarray Data for Novel Hypotheses Generation." In Linking Literature, Information, and Knowledge for Biology. Springer Berlin Heidelberg, 2010. http://dx.doi.org/10.1007/978-3-642-13131-8_7.

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Khelif, Khaled, Rose Dieng-Kuntz, and Pascal Barbry. "Semantic Web Technologies for Interpreting DNA Microarray Analyses: The MEAT System." In Lecture Notes in Computer Science. Springer Berlin Heidelberg, 2005. http://dx.doi.org/10.1007/11581062_12.

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Jin, Peiquan, Lihua Yue, and Yuchang Gong. "Semantics and Modeling of Spatiotemporal Changes." In On The Move to Meaningful Internet Systems 2003: CoopIS, DOA, and ODBASE. Springer Berlin Heidelberg, 2003. http://dx.doi.org/10.1007/978-3-540-39964-3_58.

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Neel, Andrew, Max Garzon, and Phani Penumatsa. "Improving the Quality of Semantic Retrieval in DNA-Based Memories with Learning." In Lecture Notes in Computer Science. Springer Berlin Heidelberg, 2004. http://dx.doi.org/10.1007/978-3-540-30132-5_7.

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Sotnykova, Anastasiya. "Geodata Interoperation via Semantic Correspondences." In On the Move to Meaningful Internet Systems 2002: CoopIS, DOA, and ODBASE. Springer Berlin Heidelberg, 2002. http://dx.doi.org/10.1007/3-540-36124-3_88.

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O’Riain, Sean, and Peter Spyns. "Enhancing the Business Analysis Function with Semantics." In On the Move to Meaningful Internet Systems 2006: CoopIS, DOA, GADA, and ODBASE. Springer Berlin Heidelberg, 2006. http://dx.doi.org/10.1007/11914853_50.

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Conference papers on the topic "DNA semantics"

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Huang, Yingxiang, Minyan Lu, and Xun Long. "Semantic-Guided Adaptive Exploration Testing for GUI Software." In 2024 11th International Conference on Dependable Systems and Their Applications (DSA). IEEE, 2024. https://doi.org/10.1109/dsa63982.2024.00028.

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Long, Xun, Jun Ai, Jieyu Zhao, and Yingxiang Huang. "A Vulnerability Propagation Impact Analysis Approach Based on Code Semantics with LLM." In 2024 11th International Conference on Dependable Systems and Their Applications (DSA). IEEE, 2024. https://doi.org/10.1109/dsa63982.2024.00036.

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Huang, Chongyang, Yi Zhu, Qiao Yu, Yi Ding, and Guosheng Hao. "Software Defect Prediction Model Based on Syntactic Semantics and Flow Information Features." In 2024 11th International Conference on Dependable Systems and Their Applications (DSA). IEEE, 2024. https://doi.org/10.1109/dsa63982.2024.00013.

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Zhang, Yutao, and Jun Ai. "Semantic-Weighted Word Error Rate Based on BERT for Evaluating Automatic Speech Recognition Models." In 2024 11th International Conference on Dependable Systems and Their Applications (DSA). IEEE, 2024. https://doi.org/10.1109/dsa63982.2024.00034.

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Todoran, Eneia Nicolae, and Nikolaos Papaspyrou. "Experiments with continuation semantics for DNA computing." In 2013 IEEE International Conference on Intelligent Computer Communication and Processing (ICCP). IEEE, 2013. http://dx.doi.org/10.1109/iccp.2013.6646117.

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Sharma, Puru, Cheng-Kai Lim, Dehui Lin, Yash Pote, and Djordje Jevdjic. "Efficiently Enabling Block Semantics and Data Updates in DNA Storage." In MICRO '23: 56th Annual IEEE/ACM International Symposium on Microarchitecture. ACM, 2023. http://dx.doi.org/10.1145/3613424.3614308.

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Chen, Simin, Hamed Khanpour, Cong Liu, and Wei Yang. "Learn to Reverse DNNs from AI Programs Automatically." In Thirty-First International Joint Conference on Artificial Intelligence {IJCAI-22}. International Joint Conferences on Artificial Intelligence Organization, 2022. http://dx.doi.org/10.24963/ijcai.2022/94.

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With the privatization deployment of DNNs on edge devices, the security of on-device DNNs has raised significant concern. To quantify the model leakage risk of on-device DNNs automatically, we propose NNReverse, the first learning-based method which can reverse DNNs from AI programs without domain knowledge. NNReverse trains a representation model to represent the semantics of binary code for DNN layers. By searching the most similar function in our database, NNReverse infers the layer type of a given function’s binary code. To represent assembly instructions semantics precisely, NNReverse pro
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Martinez, Ryan Marçal Saldanha Magaña, and Oto Araújo Vale. "Formal features for a syntactic-semantic classification of predicative adjectives in Brazilian Portuguese." In Simpósio Brasileiro de Tecnologia da Informação e da Linguagem Humana. Sociedade Brasileira de Computação, 2023. http://dx.doi.org/10.5753/stil.2023.233974.

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Syntactic-semantic classification of words relies ultimately on the selection of appropriate formal features. This is a bibliographic study discussing the applicability and relevance to Brazilian Portuguese of features proposed to correlate to semantics in large-scale work on predicative adjectives. These include distributional features of subjects, complements, prepositions, and copular verbs, as well as transformational features (i.e., those obtained by information-preserving rephrasing of sentences). The results of this bibliographic search suggest that 40 of the formal properties registere
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Fadzli, Syed Abdullah, and Rossitza Setchi. "Ontology-based indexing of annotated images using semantic DNA and vector space model." In 2011 International Conference on Semantic Technology and Information Retrieval (STAIR). IEEE, 2011. http://dx.doi.org/10.1109/stair.2011.5995762.

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Brinkschulte, Uwe, and Mathias Pacher. "Semantic Description of Artificial DNA for an Organic Computing Middleware Architecture." In the 1st International Workshop. ACM Press, 2019. http://dx.doi.org/10.1145/3366616.3368148.

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