Relevant bibliographies by topics / DNA. Telomere. DNA-drug interactions

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  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters
  5. Conference papers

Academic literature on the topic 'DNA. Telomere. DNA-drug interactions'

Author: Grafiati
Published: 4 June 2021
Last updated: 1 February 2022

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Journal articles on the topic "DNA. Telomere. DNA-drug interactions"

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Imran, Siti A. M., Muhammad Dain Yazid, Wei Cui, and Yogeswaran Lokanathan. "The Intra- and Extra-Telomeric Role of TRF2 in the DNA Damage Response." International Journal of Molecular Sciences 22, no. 18 (2021): 9900. http://dx.doi.org/10.3390/ijms22189900.

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Telomere repeat binding factor 2 (TRF2) has a well-known function at the telomeres, which acts to protect the telomere end from being recognized as a DNA break or from unwanted recombination. This protection mechanism prevents DNA instability from mutation and subsequent severe diseases caused by the changes in DNA, such as cancer. Since TRF2 actively inhibits the DNA damage response factors from recognizing the telomere end as a DNA break, many more studies have also shown its interactions outside of the telomeres. However, very little has been discovered on the mechanisms involved in these i
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Price, C. M. "Telomere structure in Euplotes crassus: characterization of DNA-protein interactions and isolation of a telomere-binding protein." Molecular and Cellular Biology 10, no. 7 (1990): 3421–31. http://dx.doi.org/10.1128/mcb.10.7.3421.

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The nucleoprotein structure of telomeres from Euplotes crassus was studied by using nuclease and chemical footprinting. The macronuclear telomeres were found to exist as DNA-protein complexes that are resistant to micrococcal nuclease digestion. Each complex encompassed 85 to 130 base pairs of macronuclear DNA and appeared to consist of two structural domains that are characterized by dissimilar DNA-protein interactions. Dimethyl sulfate footprinting demonstrated that very sequence-specific and salt-stable interactions occur in the most terminal region of each complex. DNase I footprinting ind
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Price, C. M. "Telomere structure in Euplotes crassus: characterization of DNA-protein interactions and isolation of a telomere-binding protein." Molecular and Cellular Biology 10, no. 7 (1990): 3421–31. http://dx.doi.org/10.1128/mcb.10.7.3421-3431.1990.

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The nucleoprotein structure of telomeres from Euplotes crassus was studied by using nuclease and chemical footprinting. The macronuclear telomeres were found to exist as DNA-protein complexes that are resistant to micrococcal nuclease digestion. Each complex encompassed 85 to 130 base pairs of macronuclear DNA and appeared to consist of two structural domains that are characterized by dissimilar DNA-protein interactions. Dimethyl sulfate footprinting demonstrated that very sequence-specific and salt-stable interactions occur in the most terminal region of each complex. DNase I footprinting ind
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Corriveau, Mark, Michael R. Mullins, Diane Baus, Michael E. Harris, and Derek J. Taylor. "Coordinated Interactions of Multiple POT1-TPP1 Proteins with Telomere DNA." Journal of Biological Chemistry 288, no. 23 (2013): 16361–70. http://dx.doi.org/10.1074/jbc.m113.471896.

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Telomeres are macromolecular nucleoprotein complexes that protect the ends of eukaryotic chromosomes from degradation, end-to-end fusion events, and from engaging the DNA damage response. However, the assembly of this essential DNA-protein complex is poorly understood. Telomere DNA consists of the repeated double-stranded sequence 5′-TTAGGG-3′ in vertebrates, followed by a single-stranded DNA overhang with the same sequence. Both double- and single-stranded regions are coated with high specificity by telomere end-binding proteins, including POT1 and TPP1, that bind as a heterodimer to single-s
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Gineitis, Arunas A., Irina A. Zalenskaya, Peter M. Yau, E. Morton Bradbury, and Andrei O. Zalensky. "Human Sperm Telomere–Binding Complex Involves Histone H2b and Secures Telomere Membrane Attachment." Journal of Cell Biology 151, no. 7 (2000): 1591–98. http://dx.doi.org/10.1083/jcb.151.7.1591.

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Telomeres are unique chromatin domains located at the ends of eukaryotic chromosomes. Telomere functions in somatic cells involve complexes between telomere proteins and TTAGGG DNA repeats. During the differentiation of germ-line cells, telomeres undergo significant reorganization most likely required for additional specific functions in meiosis and fertilization. A telomere-binding protein complex from human sperm (hSTBP) has been isolated by detergent treatment and was partially purified. hSTBP specifically binds double-stranded telomeric DNA and does not contain known somatic telomere prote
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Mattern, Karin A., Susan J. J. Swiggers, Alex L. Nigg, Bob Löwenberg, Adriaan B. Houtsmuller, and J. Mark J. M. Zijlmans. "Dynamics of Protein Binding to Telomeres in Living Cells: Implications for Telomere Structure and Function." Molecular and Cellular Biology 24, no. 12 (2004): 5587–94. http://dx.doi.org/10.1128/mcb.24.12.5587-5594.2004.

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ABSTRACT Telomeric proteins have an essential role in the regulation of the length of the telomeric DNA tract and in protection against end-to-end chromosome fusion. Telomere organization and how individual proteins are involved in different telomere functions in living cells is largely unknown. By using green fluorescent protein tagging and photobleaching, we investigated in vivo interactions of human telomeric DNA-binding proteins with telomeric DNA. Our results show that telomeric proteins interact with telomeres in a complex dynamic fashion: TRF2, which has a dual role in chromosome end pr
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Postberg, J., S. A. Juranek, S. Feiler, H. Kortwig, F. Jonsson, and H. J. Lipps. "Association of the telomere-telomere-binding protein complex of hypotrichous ciliates with the nuclear matrix and dissociation during replication." Journal of Cell Science 114, no. 10 (2001): 1861–66. http://dx.doi.org/10.1242/jcs.114.10.1861.

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Telomeric interactions with the nuclear matrix have been described in a variety of eukaryotic cells and seem to be essential for specific nuclear localization. Macronuclear DNA of hypotrichous ciliates occurs in small gene-sized DNA molecules, each being terminated by telomeres. Each macronucleus contains over 10(8)individual DNA molecules. Owing to the high number of telomeres present in this nucleus it provides an excellent model to study telomere behaviour throughout the cell cycle. In this study we provide experimental evidence that the telomere-telomere-binding protein (TEBP) complex spec
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Hofr, Ctirad, Pavla Šultesová, Michal Zimmermann, et al. "Single-Myb-histone proteins from Arabidopsis thaliana: a quantitative study of telomere-binding specificity and kinetics." Biochemical Journal 419, no. 1 (2009): 221–30. http://dx.doi.org/10.1042/bj20082195.

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Proteins that bind telomeric DNA modulate the structure of chromosome ends and control telomere function and maintenance. It has been shown that AtTRB (Arabidopsis thaliana telomere-repeat-binding factor) proteins from the SMH (single-Myb-histone) family selectively bind double-stranded telomeric DNA and interact with the telomeric protein AtPOT1b (A. thaliana protection of telomeres 1b), which is involved in telomere capping. In the present study, we performed the first quantitative DNA-binding study of this plant-specific family of proteins. Interactions of full-length proteins AtTRB1 and At
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Barthwal, Ritu, and Zia Tariq. "Molecular Recognition of Parallel G-quadruplex [d-(TTGGGGT)]4 Containing Tetrahymena Telomeric DNA Sequence by Anticancer Drug Daunomycin: NMR-Based Structure and Thermal Stability." Molecules 23, no. 9 (2018): 2266. http://dx.doi.org/10.3390/molecules23092266.

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The anticancer drug daunomycin exerts its influence by multiple strategies of action to interfere with gene functioning. Besides inhibiting DNA/RNA synthesis and topoisomerase-II, it affects the functional pathway of telomere maintenance by the telomerase enzyme. We present evidence of the binding of daunomycin to parallel-stranded tetramolecular [d-(TTGGGGT)]4 guanine (G)-quadruplex DNA comprising telomeric DNA from Tetrahymena thermophilia by surface plasmon resonance and Diffusion Ordered SpectroscopY (DOSY). Circular Dichroism (CD) spectra show the disruption of daunomycin dimers, suggesti
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Holstein, Eva-Maria, Greg Ngo, Conor Lawless, et al. "Systematic Analysis of the DNA Damage Response Network in Telomere Defective Budding Yeast." G3 Genes|Genomes|Genetics 7, no. 7 (2017): 2375–89. http://dx.doi.org/10.1534/g3.117.042283.

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Abstract Functional telomeres are critically important to eukaryotic genetic stability. Scores of proteins and pathways are known to affect telomere function. Here, we report a series of related genome-wide genetic interaction screens performed on budding yeast cells with acute or chronic telomere defects. Genetic interactions were examined in cells defective in Cdc13 and Stn1, affecting two components of CST, a single stranded DNA (ssDNA) binding complex that binds telomeric DNA. For comparison, genetic interactions were also examined in cells with defects in Rfa3, affecting the major ssDNA b
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Dissertations / Theses on the topic "DNA. Telomere. DNA-drug interactions"

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Tuntiwechapikul, Wirote. "Studies of a G-quadruplex-specific cleaving reagent, expansion of long repetitive DNA sequences, and a cytosine-specific alkylating aza-enediyne /." Full text (PDF) from UMI/Dissertation Abstracts International, 2001. http://wwwlib.umi.com/cr/utexas/fullcit?p3055255.

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Bourns, Brenda. "Development and characterization of a new assay to examine telomere-protein interactions in vivo /." Thesis, Connect to this title online; UW restricted, 1997. http://hdl.handle.net/1773/6336.

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Ray, Sujay. "Interactions of DNA binding proteins with G-Quadruplex structures at the single molecule level." Kent State University / OhioLINK, 2014. http://rave.ohiolink.edu/etdc/view?acc_num=kent1415185457.

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Jasti, Madhuri. "Identification and characterization of tac5, a telomerase activation mutant, characterization of DNA damage responses and assessment of interactions between telomere-related proteins in Arabidopsis thaliana." [College Station, Tex. : Texas A&M University, 2007. http://hdl.handle.net/1969.1/ETD-TAMU-1238.

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Dale, L. D. "Studies of drug/DNA interactions in vitro." Thesis, Open University, 1989. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.234900.

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Santos, Gabriel Arantes Galvão Dias dos. "Caracterização molecular da atividade de interação da proteína RPA-1 com os telômeros de Leishmania spp." Universidade Estadual Paulista (UNESP), 2018. http://hdl.handle.net/11449/153962.

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Submitted by Gabriel Arantes Galvão Dias dos Santos (arantes_gabriel@hotmail.com) on 2018-05-14T15:21:05Z No. of bitstreams: 1 Dissertação pós defesa.pdf: 3303163 bytes, checksum: 01b3ceab15b6016a9aaca279d39ebdc5 (MD5)<br>Approved for entry into archive by Sulamita Selma C Colnago null (sulamita@btu.unesp.br) on 2018-05-14T17:46:54Z (GMT) No. of bitstreams: 1 santos_gagd_me_bot.pdf: 3303163 bytes, checksum: 01b3ceab15b6016a9aaca279d39ebdc5 (MD5)<br>Made available in DSpace on 2018-05-14T17:46:54Z (GMT). No. of bitstreams: 1 santos_gagd_me_bot.pdf: 3303163 bytes, checksum: 01b3ceab15b6016a9
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Crow, S. "Investigating reversible drug-DNA interactions in the major groove." Thesis, University of Cambridge, 2001. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.598193.

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In this work a newly developed application of the PCR has been employed in conjunction with footprinting techniques to probe the molecular determinants of the drug-DNA recognition process. Hitherto this methodology has been mainly used to study minor groove association; here it has been adapted to study the major groove instead. 1. A critical review of the literature suggested the 5-methyl group of thymine and the N7 of guanine as possible determinants in major groove recognition. Novel nucleoside triphosphates were obtained that contained specific alterations at these positions. Some were kno
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Gadsby, Elizabeth Deibler. "Drug/DNA interactions and condensation investigated with atomic force microscopy." Diss., Available online, Georgia Institute of Technology, 2004:, 2004. http://etd.gatech.edu/theses/available/etd-06182004-073934/unrestricted/gadsby%5Felizabeth%5Fd%5F200407%5Fphd.pdf.pdf.

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Thesis (Ph. D.)--School of Chemistry and Biochemistry, Georgia Institute of Technology, 2005. Directed by Lawrence A. Bottomley.<br>William D. Hunt, Committee Member ; Nicholas V. Hud, Committee Member ; L. Andrew Lyon, Committee Member ; Lawrence A. Bottomley, Committee Chair ; Loren D. Williams, Committee Member. Vita. Includes bibliographical references.
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Ḥamdān, ʿImād. "Free solution capillary electrophoresis in the study of drug DNA interactions." Thesis, University of Strathclyde, 1998. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.249881.

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Nutiu, Razvan Li Yingfu. "Fluorescent functional DNA for bioanalysis, drug discovery and nanotechnology." *McMaster only, 2006.

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Books on the topic "DNA. Telomere. DNA-drug interactions"

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Nakamoto, Kazuo. Drug-DNA interactions: Structure and spectra. John Wiley & Sons, 2008.

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Neidle, Stephen, and Michael J. Waring, eds. Molecular Aspects of Anticancer Drug-DNA Interactions. Macmillan Education UK, 1993. http://dx.doi.org/10.1007/978-1-349-12356-8.

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Neidle, Stephen, and Michael Waring, eds. Molecular Aspects of Anticancer Drug-DNA Interactions. Macmillan Education UK, 1994. http://dx.doi.org/10.1007/978-1-349-13330-7.

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Hepel, Maria. Interactions of herbicide atrazine with DNA. Nova, 2010.

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Drug-DNA interaction protocols. 2nd ed. Humana Press, Springer Science+Business Media, 2010.

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Martin, Patrick N. Design, synthesis, kinetics and biological evaluation of acridine baseed DNA intercalators. University College Dublin, 1996.

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Sobell, Henry M. Premeltons in DNA: A unifying polymer physics concept to understand DNA physical chemistry and molecular biology. Explanatory Publications (Henry M. Sobell), 2009.

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Vekshin, N. L. Biophysics of DNA-antibiotic complexes. Nova Science Publishers, 2010.

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Methods for studying nucleic acid/drug interactions. Taylor & Francis, 2012.

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Ramsden, Justine L. Development of a TSM biosensor for the determination of dna-drug interactions: A novel method to assist drug development. De Montfort University, 2003.

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Book chapters on the topic "DNA. Telomere. DNA-drug interactions"

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Ralph, Raymond K., Warren Judd, Yves Pommier, and Kurt W. Kohn. "DNA Topoisomerases." In Molecular Aspects of Anticancer Drug-DNA Interactions. Macmillan Education UK, 1994. http://dx.doi.org/10.1007/978-1-349-13330-7_1.

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Wilson, W. David. "Cooperative effects in drug-DNA interactions." In Progress in Drug Research/Fortschritte der Arzneimittelforschung/Progrès des recherches pharmaceutiques. Birkhäuser Basel, 1987. http://dx.doi.org/10.1007/978-3-0348-9289-6_5.

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Raner, G., J. Goodisman, and J. C. Dabrowiak. "Porphyrins as Probes of DNA Structure and Drug—DNA Interactions." In ACS Symposium Series. American Chemical Society, 1989. http://dx.doi.org/10.1021/bk-1989-0402.ch005.

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Hartley, John A. "Selectivity in Alkylating Agent-DNA Interactions." In Molecular Aspects of Anticancer Drug-DNA Interactions. Macmillan Education UK, 1993. http://dx.doi.org/10.1007/978-1-349-12356-8_1.

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Comess, Kenneth M., and Stephen J. Lippard. "Molecular Aspects of Platinum-DNA Interactions." In Molecular Aspects of Anticancer Drug-DNA Interactions. Macmillan Education UK, 1993. http://dx.doi.org/10.1007/978-1-349-12356-8_5.

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Wang, Andrew H. J. "Structure-Activity Studies of Anthracycline-DNA Complexes." In Molecular Aspects of Anticancer Drug-DNA Interactions. Macmillan Education UK, 1993. http://dx.doi.org/10.1007/978-1-349-12356-8_2.

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Tomasz, Maria. "The Mitomycins: Natural Cross-linkers of DNA." In Molecular Aspects of Anticancer Drug-DNA Interactions. Macmillan Education UK, 1994. http://dx.doi.org/10.1007/978-1-349-13330-7_8.

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Wang, Hao, and Charles A. Laughton. "Molecular Modelling Methods to Quantitate Drug-DNA Interactions." In Methods in Molecular Biology. Humana Press, 2009. http://dx.doi.org/10.1007/978-1-60327-418-0_8.

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Erdem, Arzum, Ece Eksin, and Ece Kesici. "Biosensors for Detection of Anticancer Drug-DNA Interactions." In Biosensors and Nanotechnology. John Wiley & Sons, Inc., 2017. http://dx.doi.org/10.1002/9781119065036.ch15.

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Chan, Peggy P. Y., and Lishan Wang. "DNA-Lipid Amphiphiles for Drug and Gene Therapy." In Ionic Interactions in Natural and Synthetic Macromolecules. John Wiley & Sons, Inc., 2012. http://dx.doi.org/10.1002/9781118165850.ch14.

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Conference papers on the topic "DNA. Telomere. DNA-drug interactions"

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Wappett, Mark, Richard Ward, Paul Fisher, et al. "Abstract A41: Exploiting synthetic lethal interactions in the DNA damage response area and beyond in drug discovery." In Abstracts: AACR Precision Medicine Series: Synthetic Lethal Approaches to Cancer Vulnerabilities - May 17-20, 2013; Bellevue, WA. American Association for Cancer Research, 2013. http://dx.doi.org/10.1158/1535-7163.pms-a41.

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Sadler, J. Evan. "THE MOLECULAR BIOLOGY OF VON WILLEBRAND FACTOR." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1643930.

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Human von Willebrand factor (vWF) is a plasma glycoprotein that is synthesized by endothelial cells and megakaryocytes, and perhaps by syncytiotrophoblast of placenta. The biosynthesis of vWF is very complex, involving proteolytic processing, glycosyla-tion, disulfide bond formation, and sulfation. Mature vWF consists of a single subunit of ∼ 250,000 daltons that is assembled into multimer ranging from dimers to species of over 10 million daltons. vWF performs its essential hemostatic function through several binding interactions, forming a bridge between specific receptors on the platelet sur
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Yue, Min, Daniel E. Dedrick, Henry Lin, Srinath Satyanarayana, and Arunava Majumdar. "Microcantilever Arrays for Multiplexed Biomolecular Analysis." In ASME 2002 International Mechanical Engineering Congress and Exposition. ASMEDC, 2002. http://dx.doi.org/10.1115/imece2002-32807.

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An accurate, efficient, and quantitative method for detection of multiple biomolecules, such as DNA and proteins, would benefit many bio-medical applications. These applications include diagnostics of complex diseases such as cancer, drug discovery, and development of fundamental scientific knowledge regarding signaling pathways. We have developed a chip-level microcantilever array designed for high-throughput biomolecular analysis. In particular, biological reactions on one surface of a microcantilever beam change its surface tension due to intermolecular energetic and entropic interactions.
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Curnutt, Austin, Kaylee Smith, Emily Darrow, Keisha B. Walters, Erick S. Vasquez, and Santanu Kundu. "Physicochemical Characterization of Mammalian Mucus and Mucin Solutions in Response to pH and [Ca2+]." In ASME-JSME-KSME 2019 8th Joint Fluids Engineering Conference. American Society of Mechanical Engineers, 2019. http://dx.doi.org/10.1115/ajkfluids2019-4944.

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Abstract Mucus is a complex fluid that maintains moisture and simultaneously acts as a barrier and facilitates transport of select materials between the body and adjacent fluids. While mucus is comprised primarily of water, it is highly heterogeneous containing the biopolymer mucin along with lipids, salts, DNA, proteins, and cells. Complex mechanisms control the reversible network formation observed in mucus and mucin solutions. Some isolated relationships between biopolymer network structure, pH and ionic strength, and rheology have been identified; however, a complete understanding of the i
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Adnan, Ashfaq, and Wing Kam Liu. "Electrostatic Self-Assembly of Functionalized Nanodiamonds and Their Binding Capacity With Doxorubicin Drugs." In ASME 2010 First Global Congress on NanoEngineering for Medicine and Biology. ASMEDC, 2010. http://dx.doi.org/10.1115/nemb2010-13164.

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While cancers have no known cure, some of them can be successfully treated with the combination of surgery and systematic therapy. In general, systemic/widespread chemotherapy is usually injected into the bloodstream to attempt to target cancer cells. Such procedure often imparts devastating side effects because cancer drugs are nonspecific in activity, and transporting them throughout the bloodstream further reduces their ability to target the right region. This means that they kill both healthy and unhealthy cells. It has been observed that the physiological conditions of the fluids around l
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