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Relevant bibliographies by topics / DNA visualization

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Academic literature on the topic 'DNA visualization'

Author: Grafiati

Published: 4 June 2021

Last updated: 27 July 2025

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Journal articles on the topic "DNA visualization"

1

Richards, Clive, and Yuri Engelhardt. "The DNA of information design for charts and diagrams." Information Design Journal 25, no. 3 (2019): 277–92. http://dx.doi.org/10.1075/idj.25.3.05ric.

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Abstract A comprehensive framework is presented for analyzing and specifying an extensive range of visualizations, such as statistical charts, maps, family trees, Venn diagrams, flow charts, texts using indenting, technical drawings and scientific illustrations. This paper describes how the fundamental ‘DNA’ building blocks of visual encoding and composition can be combined into ‘visualization patterns’ that specify these and other types of visualizations. We offer different ways of specifying each visualization pattern, including through a DNA tree diagram and through a rigorously systematic

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WASHIZU, Masao. "DNA Manipulation through Visualization." Journal of the Visualization Society of Japan 20, no. 76 (2000): 19–24. http://dx.doi.org/10.3154/jvs.20.19.

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Wu, Yan, Xiaojun Xie, Jihong Zhu, Lixin Guan, and Mengshan Li. "Overview and Prospects of DNA Sequence Visualization." International Journal of Molecular Sciences 26, no. 2 (2025): 477. https://doi.org/10.3390/ijms26020477.

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Due to advances in big data technology, deep learning, and knowledge engineering, biological sequence visualization has been extensively explored. In the post-genome era, biological sequence visualization enables the visual representation of both structured and unstructured biological sequence data. However, a universal visualization method for all types of sequences has not been reported. Biological sequence data are rapidly expanding exponentially and the acquisition, extraction, fusion, and inference of knowledge from biological sequences are critical supporting technologies for visualizati

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Griffith, Jack D. "Visualization of DNA and DNA-protein complexes by TEM." Proceedings, annual meeting, Electron Microscopy Society of America 48, no. 3 (1990): 970. http://dx.doi.org/10.1017/s0424820100162442.

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A large class of DNA and DNA-protein complexes of great interest to modern molecular biologists lie in a realm of size and complexity that it is too large for structural approaches using X ray diffraction or NMR techniques. Such complexes are usually highly irregular so that EM methods employing the formation of 2 dimensional crystals or dense-packing followed by image averaging are not usable. Examples of such complexes include topoisomerase II heterodimers bound to supercoiled DNA, plasmid DNAs being replicated by the battery of nearly 20 different proteins that initiate and carry out replic

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Berger, John A., Sanjit K. Mitra, Marco Carli, and Alessandro Neri. "Visualization and analysis of DNA sequences using DNA walks." Journal of the Franklin Institute 341, no. 1-2 (2004): 37–53. http://dx.doi.org/10.1016/j.jfranklin.2003.12.002.

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Jiang, Li, and Yongqing Yang. "Visualization of International Environmental DNA Research." Current Science 112, no. 08 (2017): 1659. http://dx.doi.org/10.18520/cs/v112/i08/1659-1664.

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Mao, Xiao-hong, Jing-hua Fu, Wei Chen, Qian You, Shiao-fen Fang, and Qun-sheng Peng. "Structural visualization of sequential DNA data." Journal of Zhejiang University SCIENCE C 12, no. 4 (2011): 263–72. http://dx.doi.org/10.1631/jzus.c1000091.

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Tanaka, Hiroyuki, and Tomoji Kawai. "Visualization of detailed structures within DNA." Surface Science 539, no. 1-3 (2003): L531—L536. http://dx.doi.org/10.1016/s0039-6028(03)00794-5.

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Graham, John S., Reid C. Johnson, and John F. Marko. "Direct Visualization of Fis-DNA Interactions." Biophysical Journal 98, no. 3 (2010): 206a. http://dx.doi.org/10.1016/j.bpj.2009.12.1098.

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Ding, Wubin, Jiwei Chen, Guoshuang Feng, et al. "DNMIVD: DNA methylation interactive visualization database." Nucleic Acids Research 48, no. D1 (2019): D856—D862. http://dx.doi.org/10.1093/nar/gkz830.

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Abstract Aberrant DNA methylation plays an important role in cancer progression. However, no resource has been available that comprehensively provides DNA methylation-based diagnostic and prognostic models, expression–methylation quantitative trait loci (emQTL), pathway activity-methylation quantitative trait loci (pathway-meQTL), differentially variable and differentially methylated CpGs, and survival analysis, as well as functional epigenetic modules for different cancers. These provide valuable information for researchers to explore DNA methylation profiles from different aspects in cancer.

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Dissertations / Theses on the topic "DNA visualization"

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Schubert, Frank. "Visualization, kinetics, and thermodynamics of DNA-protein interactions." [S.l.] : [s.n.], 2005. http://deposit.ddb.de/cgi-bin/dokserv?idn=976174790.

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Mearini, Giulia. "Sequence specific visualization of DNA in live mammalian cells." [S.l. : s.n.], 2005. http://deposit.ddb.de/cgi-bin/dokserv?idn=974208795.

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Amarh, Vincent. "Visualization of replication-dependent DNA double-strand break repair in Escherichia coli." Thesis, University of Edinburgh, 2017. http://hdl.handle.net/1842/29596.

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Chromosomal replication is a source of spontaneous DNA double-strand breaks (DSBs). In E. coli, DSBs are repaired by homologous recombination using an undamaged sister template. During repair, the RecA protein polymerizes on single-stranded DNA generated at the site of the DSB and catalyses the search for sequence homologies on the undamaged sister template. This study utilized fluorescence microscopy to investigate the spatial and temporal dynamics of the RecA protein at the site of a replication-dependent DSB generated at the lacZ locus of the E. coli chromosome. The DSB was generated by Sbc

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Song, Yajing. "Advances in DNA Detection on Paper Chips." Licentiate thesis, KTH, Genteknologi, 2013. http://urn.kb.se/resolve?urn=urn:nbn:se:kth:diva-133614.

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DNA detection has an increasing importance in our everyday lives, with applications ranging from microbial diagnostics to forensic analysis. Currently, as the associated costs decrease, DNA diagnostic techniques are routinely used not only in research laboratories, but also in clinical and forensic practice. The present thesis aims to unravel the potential of cellulose filter paper to be a viable candidate for DNA array support. There are two papers in this study. In Paper I, we studied the method of functionalizing the surface of filter paper and the possibility to detect DNA on acitve paper

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Kawamoto, Yusuke. "Synthesis and Biological Evaluation of Pyrrole-Imidazole Polyamide Probes for Visualization of Telomeres." Kyoto University, 2018. http://hdl.handle.net/2433/232264.

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Badawi, Hawazin Faiz. "DT-DNA: Devising a DNA Paradigm for Modeling Health Digital Twins." Thesis, Université d'Ottawa / University of Ottawa, 2021. http://hdl.handle.net/10393/41906.

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The potential of Digital twin (DT) technology outside of the industrial field has been recognized by researchers who have promoted the vision of applying DTs technology beyond manufacturing, to purposes such as enhancing human well-being and improving quality of life (QoL). The expanded definition of DTs to incorporate living and nonliving physical entities into the definition of DTs was a key motivation behind the model introduced in this thesis for building health digital twins of citizens. In contrast with DTs that have been developed in more industrial fields, this type of digital twins mo

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Hemminger, Orin L. "Visualizing and Understanding Complex Micro/Nanofluidic Flow Behavior." The Ohio State University, 2010. http://rave.ohiolink.edu/etdc/view?acc_num=osu1275398565.

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Anton, Tobias [Verfasser], and Heinrich [Akademischer Betreuer] Leonhardt. "Repurposing Cas9 as a programmable DNA-binding platform for genome visualization, targeted epigenetic manipulation and exploration of local chromatin composition / Tobias Anton ; Betreuer: Heinrich Leonhardt." München : Universitätsbibliothek der Ludwig-Maximilians-Universität, 2017. http://d-nb.info/1160876126/34.

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MATTEI, Aldo. "Fingerprint Enhancement by means of Electromagnetic Radiation: a Pilot Study to Drive Future Researches." Doctoral thesis, Università degli studi di Ferrara, 2011. http://hdl.handle.net/11392/2389238.

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Fingerprints are a worldwide well known tool for law enforcement agencies to reach the individualization of people convicted of a crime. Moreover, all major countries have huge fingerprint databases and efficient automated systems (AFIS) to perform electronic screening of fingerprints marks recovered by crime scene investigation. Fingerprints are permanent and even if, from a scientific point of view, they could not be considered unique, friction ridge is highly selective and allows a discrimination between different individuals with a very high proficiency. Up to now, the most common techniq

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Halladjian, Sarkis. "Spatially Integrated Abstraction of Genetic Molecules." Electronic Thesis or Diss., université Paris-Saclay, 2020. http://www.theses.fr/2020UPASG056.

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Le génome humain est principalement constitué d'ADN, une macromolécule constituée d'une longue séquence linéaire de bases, étroitement serrée pour s'insérer dans le noyau relativement petit. L'empaquetage donne lieu à de multiples niveaux hiérarchiques d'organisation. Des recherches récentes ont montré que, parallèlement à la séquence linéaire, l'agencement spatial du génome joue un rôle important dans la fonction et l'activité du génome. La visualisation des aspects li-né-aires et spatiaux des données du génome est donc nécessaire. Dans cette thèse, nous nous concentrons sur le concept d'abst

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Books on the topic "DNA visualization"

1

Kruger, Erin. Forensic Image: Scientific Visualization and DNA. Taylor & Francis Group, 2019.

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Kruger, Erin. Forensic Image: Scientific Visualization and DNA. Taylor & Francis Group, 2018.

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Ramnath, Rajendranath Pepe. Genetics of Vision: The DNA of Purposeful Visualization. Independent Publisher, 2008.

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Wang, Jason T. L., Bruce A. Shapiro, and Dennis Shasha, eds. Pattern Discovery in Biomolecular Data. Oxford University Press, 1999. http://dx.doi.org/10.1093/oso/9780195119404.001.0001.

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Finding patterns in biomolecular data, particularly in DNA and RNA, is at the center of modern biological research. These data are complex and growing rapidly, so the search for patterns requires increasingly sophisticated computer methods. Pattern Discovery in Biomolecular Data provides a clear, up-to-date summary of the principal techniques. Each chapter is self-contained, and the techniques are drawn from many fields, including graph theory, information theory, statistics, genetic algorithms, computer visualization, and vision. Since pattern searches often benefit from multiple approaches,

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Jiu shi yao ni da dan si kao: Si kao ge ju cai shi cheng gong guan jian. Shi chao chu ban you xian gong si, 2006.

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Borba, Marcelo C., and Monica E. Villarreal. Humans-with-Media and the Reorganization of Mathematical Thinking: Information and Communication Technologies, Modeling, Visualization and Experimentation (Mathematics Education Library). Springer, 2005.

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Lehman, Frank. Neo-Riemannian Theory at the Movies. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780190606398.003.0004.

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This chapter is dedicated to explaining the methodology of neo-Riemannian theory (NRT) and analysis. The historical background of NRT is introduced, and an inventory of transformations, including the well-known neo-Riemannian operators (L, P, and R) is laid out in a user-friendly manner. Important issues for NRT, including harmonic combinatoriality, parsimony, tonal agnosticism, and spatiality, are all introduced and connected to the analysis of film music. Special attention is given to the associative content of triadic relationships, with two progressions of particular interest to film compo

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Kent, Allen. Encyclopedia of Library and Information Science: Volume 66 - Supplement 29 - Automated System for the Generation of Document Indexes to Volume Visualization ... of Library and Information Science). CRC, 2000.

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9

Austin, Dan, and Bryan Mann. Powerlifting. 2nd ed. Human Kinetics, 2022. http://dx.doi.org/10.5040/9781718225473.

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“Reading Powerlifting is like having Bryan Mann right there training with you. The book gives you everything you need to know. It's the best book on training I've read in a long time!” —C.J. Murphy, Owner of Total Performance Sports (TPSMethod.com) and Coach at Team EliteFTS “In powerlifting, you can choose to learn from academic advice or practical advice from a champion. Which one is better? Well, now you don't have to choose, because with Powerlifting by Dr. Bryan Mann and Coach Dan Austin you get the best of both worlds in one book. I wish I had this source when I was competing.” —Coach Tr

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Book chapters on the topic "DNA visualization"

1

Jin, Xuelin, and Kyubong Jo. "Single-Molecule DNA Visualization." In Handbook of Chemical Biology of Nucleic Acids. Springer Nature Singapore, 2023. http://dx.doi.org/10.1007/978-981-19-9776-1_53.

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Jin, Xuelin, and Kyubong Jo. "Single-Molecule DNA Visualization." In Handbook of Chemical Biology of Nucleic Acids. Springer Nature Singapore, 2022. http://dx.doi.org/10.1007/978-981-16-1313-5_53-1.

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Engelhardt, Yuri, and Clive Richards. "The DNA Framework of Visualization." In Diagrammatic Representation and Inference. Springer International Publishing, 2020. http://dx.doi.org/10.1007/978-3-030-54249-8_51.

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Jin, Xuelin, Y. Tehee Kim, and Kyubong Jo. "DNA Visualization Using Fluorescent Proteins." In Methods in Molecular Biology. Springer US, 2022. http://dx.doi.org/10.1007/978-1-0716-2667-2_11.

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Shah, Nameeta, Scott E. Dillard, Gunther H. Weber, and Bernd Hamann. "Volume Visualization of Multiple Alignment of Large Genomic DNA." In Mathematics and Visualization. Springer Berlin Heidelberg, 2009. http://dx.doi.org/10.1007/b106657_17.

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Rizman Žalik, Krista. "Visualization and Clustering of DNA Sequences." In Lecture Notes in Electrical Engineering. Springer US, 2009. http://dx.doi.org/10.1007/978-0-387-84814-3_70.

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Sawaguchi, T., S. Nakamura, X. Wang, and A. Sawaguchi. "Visualization of Epigenetic Toxicological DNA Changes." In 16th Congress of the International Society for Forensic Haemogenetics (Internationale Gesellschaft für forensische Hämogenetik e.V.), Santiago de Compostela, 12–16 September 1995. Springer Berlin Heidelberg, 1996. http://dx.doi.org/10.1007/978-3-642-80029-0_58.

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Cox, David N., and Alan L. Tharp. "Toward a Visualization of DNA Sequences." In Advances in Experimental Medicine and Biology. Springer New York, 2010. http://dx.doi.org/10.1007/978-1-4419-5913-3_48.

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Reinhart, Marius, Corella S. Casas-Delucchi, and M. Cristina Cardoso. "Spatiotemporal Visualization of DNA Replication Dynamics." In Imaging Gene Expression. Humana Press, 2013. http://dx.doi.org/10.1007/978-1-62703-526-2_15.

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Lyubchenko, Yuri L. "AFM Visualization of Protein–DNA Interactions." In Single-molecule Studies of Proteins. Springer New York, 2012. http://dx.doi.org/10.1007/978-1-4614-4921-8_4.

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Conference papers on the topic "DNA visualization"

1

Wenxiu, Ma, Li Yuanheng, Xue Xingwei, Pei Keke, and Guo Yifan. "Research on 3D Visualization of Human Body Actions." In 2024 11th International Conference on Dependable Systems and Their Applications (DSA). IEEE, 2024. https://doi.org/10.1109/dsa63982.2024.00058.

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Schkolne, S., H. Ishii, and P. Schroder. "Immersive design of DNA molecules with a tangible interface." In IEEE Visualization 2004. IEEE, 2004. http://dx.doi.org/10.1109/visual.2004.47.

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Dimitrova, Nevenka, Yee Him Cheung, and Michael Zhang. "Analysis and visualization of DNA spectrograms." In the 14th annual ACM international conference. ACM Press, 2006. http://dx.doi.org/10.1145/1180639.1180861.

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Bobkov, G. A., M. I. Berezovskaya, M. O. Potudanskaya, and M. S. Rubel. "DIFFERENT TYPES OF DNA-NANOSENSORS VISUALIZATION." In OpenBio-2023. ИПЦ НГУ, 2023. http://dx.doi.org/10.25205/978-5-4437-1526-1-47.

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Inflammation of tissues lining the brain and spinal cord is known as meningitis. Neisseria meningitidis is typically to blame for it and can be fatal within 24 hours of infection. Here we offer a rapid detection of this pathogen suitable for Point-of-care diagnostics. We used isothermal amplification and different types of multicomponent detection systems.

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Dunham, Margaret, Donya Quick, Yuhang Wang, Monnie McGee, and Jim Waddle. "Visualization of DNA/RNA Structure using Temporal CGRs." In Sixth IEEE Symposium on BioInformatics and BioEngineering (BIBE'06). IEEE, 2006. http://dx.doi.org/10.1109/bibe.2006.253331.

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Mamania, Ashish, Georges G. Grinstein, and Kenneth A. Marx. "GENVIS: a sequence visualization technique for genomic DNA." In Electronic Imaging: Science & Technology, edited by Georges G. Grinstein and Robert F. Erbacher. SPIE, 1996. http://dx.doi.org/10.1117/12.234669.

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Rafaels, Karin, John Kerrigan, Noshir Langrana, and David Lin. "Molecular Modeling as a Visualization Tool in Design of DNA Crosslinked Polyacrylamide." In ASME 2004 International Mechanical Engineering Congress and Exposition. ASMEDC, 2004. http://dx.doi.org/10.1115/imece2004-59930.

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Polymers such as polyacrylamide form a diverse class of biomaterials in use today. The experimental research performed by our group has demonstrated how a critical concentration of crosslinking DNA strands can lead to gel formation in the polyacrylamide. The removal or addition of DNA strands can reverse or significantly increase the stiffness and strength of the gel. DNA is a versatile material for the exploration of nanoscale structures because its hybridization chemistry is very specific. DNA crosslinked gels use end-modified DNA oligonucleotides in the gels. The ability to choose the base

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Rambally, Gerard. "A visualization approach to motif discovery in DNA sequences." In Proceedings 2007 IEEE SoutheastCon. IEEE, 2007. http://dx.doi.org/10.1109/secon.2007.342923.

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Glisovic, Natasa. "System for DNA visualization and clustering in searching through information." In 2010 11th International Symposium on Computational Intelligence and Informatics (CINTI). IEEE, 2010. http://dx.doi.org/10.1109/cinti.2010.5672254.

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Patra, J. C., Ee Luang Ang, P. K. Meher, and Qin Zhen. "A New SOM-based Visualization Technique for DNA Microarray Data." In The 2006 IEEE International Joint Conference on Neural Network Proceedings. IEEE, 2006. http://dx.doi.org/10.1109/ijcnn.2006.247044.

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Reports on the topic "DNA visualization"

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Muyle, Aline. Analysis of DNA Methylation. Instats Inc., 2024. http://dx.doi.org/10.61700/6ayq8hff26qxn1470.

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This three-day workshop provides comprehensive training in the analysis of DNA methylation, a key epigenetic modification influencing gene expression and controlling the spread of transposable elements in genomes. Led by Dr Aline Muyle, participants will gain theoretical knowledge and practical skills in data preprocessing, statistical analysis, and visualization using RStudio and various bioinformatic software using Bash scripts. The workshop is suited for researchers in Biostatistics, Biology, Genetics, Ecology, Evolution, Bioinformatics, Molecular Biology, and Medical Research.

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Shah, Nameeta, Olivier Couronne, Len A. Pennacchio, et al. Phylo-VISTA: An Interactive Visualization Tool for Multiple DNA Sequence Alignments. Office of Scientific and Technical Information (OSTI), 2004. http://dx.doi.org/10.2172/832965.

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Dogget, N., G. Myers, and C. J. Wills. Similarity landscapes: An improved method for scientific visualization of information from protein and DNA database searches. Office of Scientific and Technical Information (OSTI), 1998. http://dx.doi.org/10.2172/291003.

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Rodriguez Muxica, Natalia. Open configuration options Bioinformatics for Researchers in Life Sciences: Tools and Learning Resources. Inter-American Development Bank, 2022. http://dx.doi.org/10.18235/0003982.

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The COVID-19 pandemic has shown that bioinformatics--a multidisciplinary field that combines biological knowledge with computer programming concerned with the acquisition, storage, analysis, and dissemination of biological data--has a fundamental role in scientific research strategies in all disciplines involved in fighting the virus and its variants. It aids in sequencing and annotating genomes and their observed mutations; analyzing gene and protein expression; simulation and modeling of DNA, RNA, proteins and biomolecular interactions; and mining of biological literature, among many other c

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Liu, Chaoqun. Upgrade of the Computing and Visualization System for DNS/LES Research. Defense Technical Information Center, 2001. http://dx.doi.org/10.21236/ada387693.

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