Relevant bibliographies by topics / Dynamic Energy Budget (DEB) Model

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  2. Dissertations / Theses
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Academic literature on the topic 'Dynamic Energy Budget (DEB) Model'

Author: Grafiati
Published: 4 June 2025
Last updated: 1 August 2025

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Journal articles on the topic "Dynamic Energy Budget (DEB) Model"

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Liao, Baochao, Xiujuan Shan, Can Zhou, Yanan Han, Yunlong Chen, and Qun Liu. "A dynamic energy budget–integral projection model (DEB-IPM) to predict population-level dynamics based on individual data: a case study using the small and rapidly reproducing species Engraulis japonicus." Marine and Freshwater Research 71, no. 4 (2020): 461. http://dx.doi.org/10.1071/mf19158.

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The coupling of a dynamic energy budget (DEB) model with an integral projection model (IPM; i.e. generating a DEB-IPM) is a promising new method to predict the population-level dynamics of species based on individuals. In a single framework, the DEB component provides links to the individual-level physiological processes, and the IPM component provides an alternative way to investigate ecological changes in quantitative life history characteristics and population dynamics. In this paper we present a DEB-IPM to analyse a Japanese anchovy (Engraulis japonicus) population in Chinese seas. The cou
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Jager, Tjalling, and Chris Klok. "Extrapolating toxic effects on individuals to the population level: the role of dynamic energy budgets." Philosophical Transactions of the Royal Society B: Biological Sciences 365, no. 1557 (2010): 3531–40. http://dx.doi.org/10.1098/rstb.2010.0137.

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The interest of environmental management is in the long-term health of populations and ecosystems. However, toxicity is usually assessed in short-term experiments with individuals. Modelling based on dynamic energy budget (DEB) theory aids the extraction of mechanistic information from the data, which in turn supports educated extrapolation to the population level. To illustrate the use of DEB models in this extrapolation, we analyse a dataset for life cycle toxicity of copper in the earthworm Dendrobaena octaedra . We compare four approaches for the analysis of the toxicity data: no model, a
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Nisbet, Roger M., Edward McCauley, and Leah R. Johnson. "Dynamic energy budget theory and population ecology: lessons from Daphnia." Philosophical Transactions of the Royal Society B: Biological Sciences 365, no. 1557 (2010): 3541–52. http://dx.doi.org/10.1098/rstb.2010.0167.

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Dynamic energy budget (DEB) theory offers a perspective on population ecology whose starting point is energy utilization by, and homeostasis within, individual organisms. It is natural to ask what it adds to the existing large body of individual-based ecological theory. We approach this question pragmatically—through detailed study of the individual physiology and population dynamics of the zooplankter Daphnia and its algal food. Standard DEB theory uses several state variables to characterize the state of an individual organism, thereby making the transition to population dynamics technically
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Monaco, Cristián J., David S. Wethey, and Brian Helmuth. "A Dynamic Energy Budget (DEB) Model for the Keystone Predator Pisaster ochraceus." PLoS ONE 9, no. 8 (2014): e104658. http://dx.doi.org/10.1371/journal.pone.0104658.

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Lorena, António, Gonçalo M. Marques, S. A. L. M. Kooijman, and Tânia Sousa. "Stylized facts in microalgal growth: interpretation in a dynamic energy budget context." Philosophical Transactions of the Royal Society B: Biological Sciences 365, no. 1557 (2010): 3509–21. http://dx.doi.org/10.1098/rstb.2010.0101.

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A dynamic energy budget (DEB) model for microalgae is proposed. This model deviates from the standard DEB model as it needs more reserves to cope with the variation of assimilation pathways, requiring a different approach to growth based on the synthesizing unit (SU) theory for multiple substrates. It is shown that the model is able to accurately predict experimental data in constant and light-varying conditions with most of the parameter values taken directly from the literature. Also, model simulations are shown to be consistent with stylized facts (SFs) concerning N∶C ratio. These SFs are r
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Nisbet, R. M., M. Jusup, T. Klanjscek, and L. Pecquerie. "Integrating dynamic energy budget (DEB) theory with traditional bioenergetic models." Journal of Experimental Biology 215, no. 6 (2012): 892–902. http://dx.doi.org/10.1242/jeb.059675.

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Nisbet, R. M., M. Jusup, T. Klanjscek, and L. Pecquerie. "Integrating dynamic energy budget (DEB) theory with traditional bioenergetic models." Journal of Experimental Biology 215, no. 7 (2012): 1246. http://dx.doi.org/10.1242/jeb.071845.

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Rico-Villa, B., I. Bernard, R. Robert, and S. Pouvreau. "A Dynamic Energy Budget (DEB) growth model for Pacific oyster larvae, Crassostrea gigas." Aquaculture 305, no. 1-4 (2010): 84–94. http://dx.doi.org/10.1016/j.aquaculture.2010.04.018.

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Grossowicz, Michal, Gonçalo M. Marques, and George A. K. van Voorn. "A dynamic energy budget (DEB) model to describe population dynamics of the marine cyanobacterium Prochlorococcus marinus." Ecological Modelling 359 (September 2017): 320–32. http://dx.doi.org/10.1016/j.ecolmodel.2017.06.011.

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Vinga, S., A. R. Neves, H. Santos, B. W. Brandt, and S. A. L. M. Kooijman. "Subcellular metabolic organization in the context of dynamic energy budget and biochemical systems theories." Philosophical Transactions of the Royal Society B: Biological Sciences 365, no. 1557 (2010): 3429–42. http://dx.doi.org/10.1098/rstb.2010.0156.

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The dynamic modelling of metabolic networks aims to describe the temporal evolution of metabolite concentrations in cells. This area has attracted increasing attention in recent years owing to the availability of high-throughput data and the general development of systems biology as a promising approach to study living organisms. Biochemical Systems Theory (BST) provides an accurate formalism to describe biological dynamic phenomena. However, knowledge about the molecular organization level, used in these models, is not enough to explain phenomena such as the driving forces of these metabolic
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Dissertations / Theses on the topic "Dynamic Energy Budget (DEB) Model"

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Aldebert, Clément. "Uncertainty in predictive ecology : consequence of choices in model construction." Thesis, Aix-Marseille, 2016. http://www.theses.fr/2016AIXM4075/document.

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Les systèmes écologiques sont des systèmes complexes qui ne peuvent pas être d´écrits par un unique modèle mathématique. De nombreux modèles peuvent être construits pour un même système, selon les internets du modélisateur et ses choix dans la construction du modèle. Quel est l’impact de ces choix dans la construction du modèle sur les prédictions de la dynamique des systèmes écologiques et les informations qu’elles fournissent sur la résilience de ces systèmes est la question générale qui guide le travail présente dans cette thèse. Cette thèses focalise sur un choix entre formulations de modè
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Aldebert, Clément. "Uncertainty in predictive ecology : consequence of choices in model construction." Electronic Thesis or Diss., Aix-Marseille, 2016. http://www.theses.fr/2016AIXM4075.

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Les systèmes écologiques sont des systèmes complexes qui ne peuvent pas être d´écrits par un unique modèle mathématique. De nombreux modèles peuvent être construits pour un même système, selon les internets du modélisateur et ses choix dans la construction du modèle. Quel est l’impact de ces choix dans la construction du modèle sur les prédictions de la dynamique des systèmes écologiques et les informations qu’elles fournissent sur la résilience de ces systèmes est la question générale qui guide le travail présente dans cette thèse. Cette thèses focalise sur un choix entre formulations de modè
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Augustine, Starrlight. "Metabolic programming of zebrafish, Danio rerio uncovered : Physiological performance as explained by Dynamic Energy Budget Theory and life-cycle consequences of uranium induced perturbations." Thesis, Aix-Marseille, 2012. http://www.theses.fr/2012AIXM4708/document.

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Ce travail de thèse s'est intéressé aux effets de l'uranium appauvri (U) sur le poisson zèbre, Danio rerio. L'hypothèse de travail majeure est que les effets de l'U peuvent se traduire par des modifications du métabolisme. Par conséquent nous avons caractérisé la performance physiologique par le biais de la théorie des bilans d'énergie dynamique (DEB) car c'est la seule théorie qui quantifie simultanément l'ingestion, l'assimilation, la croissance, la reproduction, la maturation, la maintenance et le vieillisse¬ment au cours du cycle de vie entier à des niveaux de nourriture variable. Un modèl
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De, Cubber Lola. "Etude des traits de vie de annélides polychète Arenicola marina et A. defodiens : développement d’un modèle de type "Dynamic Energy Budget" (DEB) et conservation de ces espèces." Thesis, Lille 1, 2019. http://www.theses.fr/2019LIL1R052.

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Les arénicoles sont des polychètes benthiques présentant un cycle de vie bentho-pélagique complexe avec deux phases de dispersion larvaire seulement partiellement décrit jusqu’à présent. Ces espèces sont intensément pêchées comme appât sur les plages de la Manche orientale, notamment au sein d’une aire marine protégée, le Parc naturel marin des estuaires picards et de la mer d’Opale. Sans mesures de gestion, cette activité pourrait entraîner une diminution des populations d’arénicoles tout en affectant les caractéristiques physiques des plages et la biodiversité associée. Tout d’abord, deux es
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Augustine, Starrlight. "Metabolic programming of zebra fish, Danio rerio, uncovered; physiological performance as explained by Dynamic Energy Budget theory and life cycle consequences of uranium induced perturbations." Phd thesis, Aix-Marseille Université, 2012. http://tel.archives-ouvertes.fr/tel-00761088.

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L'objectif de ces travaux de thèse était de caractériser la toxicité de l'uranium sur le métabolisme du poisson zèbre, Danio rerio. Puisque les effets de l'uranium se traduisent par des modifications de la performance du métabolisme, la question suivante se pose: que savons-nous du métabolisme du poisson zèbre témoin? Très peu de chose. En effet, nos connaissances à ce sujet sont assez limitées en dépit d'un grand nombre de travaux sur le développement de ce poisson. C'est pourquoi les trois premiers chapitres de ce manuscrit sont dédiés à la caractérisation du métabolisme témoin du Danio. J'a
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Mounier, Florence. "Modélisation mécaniste de la bioaccumulation de contaminants organiques (PCB et PFAS) chez les poissons dans le contexte du changement global : application aux juvéniles de sole commune de l’estuaire de la Gironde." Thesis, Bordeaux, 2019. http://www.theses.fr/2019BORD0046.

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Les estuaires sont des écosystèmes aquatiques particulièrement soumis au changement global et notamment à la pollution par de nombreux xénobiotiques pouvant présenter un risque écotoxicologique et sanitaire. En toxicologie environnementale et en évaluation des risques la bioaccumulation est un processus fondamental car elle contrôle les doses internes de toxiques potentiels. Or les flux de contamination et de décontamination des organismes dépendent de processus internes (e.g. nutrition, croissance) eux-mêmes dépendant des conditions environnementales (e.g. température, nourriture) qui peuvent
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Wang, Qin. "Review on Mechanistic Effect Models Used in Ecological Risk Assessment of Pesticides According to the European Food Safety Authority Guidance." Thesis, Högskolan i Halmstad, Akademin för ekonomi, teknik och naturvetenskap, 2018. http://urn.kb.se/resolve?urn=urn:nbn:se:hh:diva-38301.

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In ecological risk assessment, mechanistic effect models (MEMs) are thought to overcome the limitation of standard laboratory single species test by accurately extrapolating the models to population-level. This review introduces the basic theory of MEMs-dynamic energy budget theory which can connect with toxicokinetic/ toxicodynamic models to describe the interaction of toxicants and organisms. This review summarizes some typical MEMs which simulate different scenarios, pesticides and species, and compared their modelling performance according to the guidance on good effect models of European
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Book chapters on the topic "Dynamic Energy Budget (DEB) Model"

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M. Smallegange, Isabel, Lukas H.A. Edwards, and Amy Attle. "Population Performance and Resilience in Polychaetes as Environmental Indicators of Estuarine Ecosystems." In Estuaries - Dynamic Ecosystems at the Land-Sea Interface [Working Title]. IntechOpen, 2025. https://doi.org/10.5772/intechopen.1011169.

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Understanding how estuarine populations respond to environmental changes is crucial for estuarine ecosystem management. Life history theory, particularly the fast-slow and parity continuums, offers a framework to predict population performance and resilience. However, applying these continuums to estuarine, environmental indicator species like spionida polychaetes remain underexplored. We investigated the applicability of the fast-slow and parity continuums as trait-based indicators of performance and resilience in seven estuarine polychaete species (Axiothella serrata, Boccardia proboscidea,
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"Multivariate DEB models." In Dynamic Energy and Mass Budgets in Biological Systems. Cambridge University Press, 2000. http://dx.doi.org/10.1017/cbo9780511565403.008.

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Conference papers on the topic "Dynamic Energy Budget (DEB) Model"

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Reddinger, Jean-Paul. "LQR Gain Tuning for On-Demand Performance Using Reinforcement Learning." In Vertical Flight Society 74th Annual Forum & Technology Display. The Vertical Flight Society, 2018. http://dx.doi.org/10.4050/f-0074-2018-12916.

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A reinforcement learning agent is trained to optimally scale the weighting matrices of a linear quadratic regulator for full state feedback control. Training is done using the model-free Deep Deterministic Policy Gradient on a dynamic simulation of the linearized model of an AeroQuad Cyclone ARF quadrotor. In the first task, the reinforcement learning agent is designed to produce an optimal control response for a step input of between 0 and 20 meters. The optimality target is randomly varied between incentivizing low power and incentivizing rapid settling times, and the agent is able to learn
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Kitazawa, Daisuke, and Piet Ruardij. "Modelling of Competition for Space and Food Among Mussels Under a Coastal Floating Platform." In ASME 2005 24th International Conference on Offshore Mechanics and Arctic Engineering. ASMEDC, 2005. http://dx.doi.org/10.1115/omae2005-67397.

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A competition model among mussels (Mytilus galloprovincialis) was developed to predict the environmental impacts of mussels under a coastal floating platform, which is called Mega-Float. The model describes the dynamics of mussels as controlled by competition for space and food availability. The model consists of a physiological growth submodel based on the Dynamic Energy Budget (DEB) model and a competition submodel for space and food. First, the parameter values in the physiological submodel are calibrated by using observations on growth of mussels (Mytilus galloprovincialis) cultivated in t
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Pannier, Christopher P., Kira Barton, David Hoelzle, and Zhi Wang. "A Model of Liquid-Drop Spreading for Electrohydrodynamic Jet Printing." In ASME 2015 Dynamic Systems and Control Conference. American Society of Mechanical Engineers, 2015. http://dx.doi.org/10.1115/dscc2015-9995.

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Electrohydrodynamic jet (E-jet) printing is a recent technique for high resolution additive micromanufacturing. With high resolution comes sensitivity to small disturbances, which has kept this technique from reaching its industrial potential. Closed loop control of E-jet printing can overcome these disturbances, but it requires an improved understanding of ink droplet spreading on the substrate and a physical model to predict printed feature locations and geometries from process inputs and disturbances. This manuscript examines a model of ink droplet spreading that uses assumptions that are i
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Brandalero, Marcelo, and Antonio Carlos Beck. "MuTARe: A Multi-Target, Adaptive Reconfigurable Architecture." In XX Simpósio em Sistemas Computacionais de Alto Desempenho. Sociedade Brasileira de Computação - SBC, 2019. http://dx.doi.org/10.5753/wscad_estendido.2019.8706.

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Power consumption, earlier a design constraint only in embedded systems, has become the major driver for architectural optimizations in all domains, from the cloud to the edge. Application-specific accelerators provide a low-power processing solution by efficiently matching the hardware to the application; however, since in many domains the hardware must execute efficiently a broad range of fast-evolving applications, unpredictable at design time and each with distinct resource requirements, alternatives approaches are required. Besides that, the same hardware must also adapt the computational
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Wathnani, Abdulkarim F., and Abdullah A. Boti. "Power Consumption Forecast Tool Based on Machine Learning Model Utilizing Plant Capacity Production." In ADIPEC. SPE, 2022. http://dx.doi.org/10.2118/211022-ms.

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Abstract This paper covers the fully implemented solution to forecast facilities’ power demand based on production flow rate. Objectives: Share how a systematic approach will forecast the demand and optimize resource allocation.Highlight how this approach enhanced reliability, planning, and, most important, the environmental impact through reducing the carbon footprint. Power consumption planning plays a crucial role in determining the resources required. An efficient and accurate forecast will be key to optimizing facility resources and support decision- making processes. The tool was develop
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McLaskey, Gregory. "Meter-Scale Laboratory Earthquakes Triggered by Fluid Injection and the Role of Background Stress in Mediating Runaway Ruptures." In 58th U.S. Rock Mechanics/Geomechanics Symposium. ARMA, 2024. http://dx.doi.org/10.56952/arma-2024-0508.

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ABSTRACT: I present large-scale laboratory experiments where water is injected directly into a stressed fault that is a saw-cut interface in a slab of granite (3 m by 1.5 m and 300 mm thick) in an attempt to examine the earthquake energy budget. The laboratory fault is subjected to 2-10 MPa stress levels, and exhibits slow and aseismic slip within a localized "nucleation zone" prior to rapid dynamic fault rupture. Slow slip associated with the nucleation of dynamic rupture is observed both for cases where water is injected onto the fault and where slip initiates spontaneously due to the extern
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Whalen, S. A., D. F. Bahr, C. D. Richards, and R. F. Richards. "Characterization of a Liquid-Vapor Phase-Change Actuator." In ASME 2005 International Mechanical Engineering Congress and Exposition. ASMEDC, 2005. http://dx.doi.org/10.1115/imece2005-82564.

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Factors affecting the efficiency of liquid-vapor phase-change actuators during dynamic operation are explored. To do this, a model actuator was specifically designed so that actuator geometry, material properties and operation could be easily varied in order to parametrically study their effects on actuator efficiency. A numerical model was developed so that the detailed energy budget within the device could be elucidated. It was found that device efficiency was maximized when the energy input into the actuator was equal to the energy required to dry out the evaporator. Membrane thermal mass a
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Lyu, Pin, Sung Goon Park, Lian Shen, and Hui Li. "A Coupled Wind-Wave-Turbine Solver for Offshore Wind Farm." In ASME 2018 1st International Offshore Wind Technical Conference. American Society of Mechanical Engineers, 2018. http://dx.doi.org/10.1115/iowtc2018-1046.

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The coupled wind-wave solver (Yang & Shen, 2011) is extended to offshore wind energy research, with the embedment of turbine model (Yang & Sotiropoulos, 2015). The composite solver consists of a high-order spectral method for surface waves, large-eddy simulation for offshore wind on wave-surface-fitted dynamic grid, and an actuator based model for the representation of blades and nacelles. The blades are discretized by line elements, and its bound motion with floating platform is considered. Some smoothed spectral operations are applied to alleviate Gibbs phenomenon brought by local ju
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Snider, Brenn, Wei Xiang, Billy Zhang, and Sergiu Lecut. "Optimizing the Prioritization of First-Time ILIs Using Quantitative Risk and Machine Learning." In 2022 14th International Pipeline Conference. American Society of Mechanical Engineers, 2022. http://dx.doi.org/10.1115/ipc2022-87309.

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Abstract Inline inspections (ILIs) are one of the most effective methods for managing the integrity of pipelines. However, many older pipelines were not designed to accommodate ILI tools. Pipeline operators often prioritize which pipelines to make inspectable on a risk-basis. While this risk-based approach has many merits, it does not necessarily result in the maximum risk reduction for a given budget as the risk-reduction from completing the inspection is not considered. An optimized prioritization strategy should consider both the uninspected risk and amount of risk reduction. Since post-ILI
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Reports on the topic "Dynamic Energy Budget (DEB) Model"

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Wijsman, Jeroen. Dynamic Energy Budget (DEB) modelBlue mussels (Mytilus edulis) : technical report INNOPRO project. Wageningen Marine Research, 2019. http://dx.doi.org/10.18174/470139.

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