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Relevant bibliographies by topics / End-to-end annealing

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Academic literature on the topic 'End-to-end annealing'

Author: Grafiati

Published: 4 June 2021

Last updated: 18 February 2022

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Journal articles on the topic "End-to-end annealing"

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Rothwell, S. W., W. A. Grasser, and D. B. Murphy. "End-to-end annealing of microtubules in vitro." Journal of Cell Biology 102, no. 2 (1986): 619–27. http://dx.doi.org/10.1083/jcb.102.2.619.

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Mixtures of pre-formed microtubules, polymerized from chicken erythrocyte and brain tubulin, rapidly anneal end-to-end in vitro in standard microtubule assembly buffer. The erythrocyte tubulin segments in annealed heteropolymers can be distinguished by an immunoelectron microscopic assay that uses an antibody specific for chicken erythrocyte beta-tubulin. An annealing process is consistent with the following observations: (a) Microtubule number decreases while the polymer mass remains constant. (b) As the total number of microtubules declines, the number of heteropolymers, and the number of se

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Huseby, Carol J., Ralf Bundschuh, and Jeff Kuret. "Tau Filament Length Distribution Reflects End-To-End Annealing." Biophysical Journal 108, no. 2 (2015): 62a. http://dx.doi.org/10.1016/j.bpj.2014.11.372.

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Uchida, A., G. Colakoglu, L. Wang, P. C. Monsma, and A. Brown. "Severing and end-to-end annealing of neurofilaments in neurons." Proceedings of the National Academy of Sciences 110, no. 29 (2013): E2696—E2705. http://dx.doi.org/10.1073/pnas.1221835110.

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Hehn, Thomas M., Julian F. P. Kooij, and Fred A. Hamprecht. "End-to-End Learning of Decision Trees and Forests." International Journal of Computer Vision 128, no. 4 (2019): 997–1011. http://dx.doi.org/10.1007/s11263-019-01237-6.

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Abstract Conventional decision trees have a number of favorable properties, including a small computational footprint, interpretability, and the ability to learn from little training data. However, they lack a key quality that has helped fuel the deep learning revolution: that of being end-to-end trainable. Kontschieder et al. (ICCV, 2015) have addressed this deficit, but at the cost of losing a main attractive trait of decision trees: the fact that each sample is routed along a small subset of tree nodes only. We here present an end-to-end learning scheme for deterministic decision trees and

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Çolakoğlu, Gülsen, and Anthony Brown. "Intermediate filaments exchange subunits along their length and elongate by end-to-end annealing." Journal of Cell Biology 185, no. 5 (2009): 769–77. http://dx.doi.org/10.1083/jcb.200809166.

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Actin filaments and microtubules lengthen and shorten by addition and loss of subunits at their ends, but it is not known whether this is also true for intermediate filaments. In fact, several studies suggest that in vivo, intermediate filaments may lengthen by end-to-end annealing and that addition and loss of subunits is not confined to the filament ends. To test these hypotheses, we investigated the assembly dynamics of neurofilament and vimentin intermediate filament proteins in cultured cells using cell fusion, photobleaching, and photoactivation strategies in combination with conventiona

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Andrianantoandro, Ernesto, Laurent Blanchoin, David Sept, J. Andrew McCammon, and Thomas D. Pollard. "Kinetic mechanism of end-to-end annealing of actin filaments 1 1Edited by M. F. Moody." Journal of Molecular Biology 312, no. 4 (2001): 721–30. http://dx.doi.org/10.1006/jmbi.2001.5005.

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Hugdahl, Jeffrey D., Carol L. Bokros, and Louis C. Morejohn. "End-to-End Annealing of Plant Microtubules by the p86 Subunit of Eukaryotic Initiation Factor-(iso)4F." Plant Cell 7, no. 12 (1995): 2129. http://dx.doi.org/10.2307/3870156.

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Caplow, M., J. Shanks, and B. P. Brylawski. "Differentiation between dynamic instability and end-to-end annealing models for length changes of steady-state microtubules." Journal of Biological Chemistry 261, no. 34 (1986): 16233–40. http://dx.doi.org/10.1016/s0021-9258(18)66704-3.

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Hugdahl, J. D., C. L. Bokros, and L. C. Morejohn. "End-to-end annealing of plant microtubules by the p86 subunit of eukaryotic initiation factor-(iso)4F." Plant Cell 7, no. 12 (1995): 2129–38. http://dx.doi.org/10.1105/tpc.7.12.2129.

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Guo, Fei, Jenan Saadatmand, Meijuan Niu, and Lawrence Kleiman. "Roles of Gag and NCp7 in Facilitating \batchmode \documentclass[fleqn,10pt,legalpaper]{article} \usepackage{amssymb} \usepackage{amsfonts} \usepackage{amsmath} \pagestyle{empty} \begin{document} \(\mathbf{tRNA}_{3}^{\mathbf{Lys}}\) \end{document} Annealing to Viral RNA in Human Immunodeficiency Virus Type 1." Journal of Virology 83, no. 16 (2009): 8099–107. http://dx.doi.org/10.1128/jvi.00488-09.

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ABSTRACT In protease-negative human immunodeficiency virus type 1 (HIV-1) [Pr(-)], the amount of \batchmode \documentclass[fleqn,10pt,legalpaper]{article} \usepackage{amssymb} \usepackage{amsfonts} \usepackage{amsmath} \pagestyle{empty} \begin{document} \(\mathrm{tRNA}_{3}^{\mathrm{Lys}}\) \end{document} annealed by Gag is modestly reduced (∼25%) compared to that annealed by mature nucleocapsid (NCp7) in protease-positive HIV-1 [Pr(+)]. However, the \batchmode \documentclass[fleqn,10pt,legalpaper]{article} \usepackage{amssymb} \usepackage{amsfonts} \usepackage{amsmath} \pagestyle{empty} \begin

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Dissertations / Theses on the topic "End-to-end annealing"

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Pritchard, Adaleigh Elizabeth. "Modeling End-to-End Annealing of Intermediate Filaments." The Ohio State University, 2014. http://rave.ohiolink.edu/etdc/view?acc_num=osu1397743583.

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Book chapters on the topic "End-to-end annealing"

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Giacovazzo, Carmelo. "Charge flipping and VLD (vive la difference)." In Phasing in Crystallography. Oxford University Press, 2013. http://dx.doi.org/10.1093/oso/9780199686995.003.0014.

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Direct methods procedures (see Chapter 6) or Patterson techniques (see Chapter 10), primarily the former, have been methods of choice for crystal structure solution of small- to medium-sized molecules from diffraction data. Over the last 30 years, several new phasing algorithms have been proposed, not requiring the use of triplet and quartet invariants, but based only on the properties of Fourier transforms. These were not competitive with direct methods and have never became popular, but they contain a nucleus for further advances. Among these we mention: (i) Bhat (1990) proposed a Metropolis technique (Metropolis et al., 1953; Kirkpatrick et al., 1983; Press et al., 1992), also known as simulated annealing (the reader is referred to Section 12.9 for details on the algorithm). From a random set of phases, an electron density map is calculated, modified, and inverted. The corresponding phases are altered according to the simulated annealing algorithm, and then used to calculate a new electron density map. The procedure is cyclic. (ii) A strictly related simulated annealing procedure has been proposed by Su (1995). The objective function to minimize was . . . R = ∑h (S|Fh|calc − |Fh|obs)2, . . . where S is the scale factor. The scheme is as follows: random atomic positions are generated and in succession shifted; the simulated annealing algorithm is applied to accept or reject atomic shifts. At the end, a new atomic structure is generated, whose positions are shifted in succession, and so on in a cyclic way. (iii) The forced coalescence method (FCP) was proposed by Drendel et al. (1995). Hybrid electron density maps (see Section 7.3.4) were actively used with different values of τ and ω. Even if never popular, the above algorithms opened the way to two other methods which are much more efficient, charge flipping and VLD (vive la difference), to which this chapter is dedicated. Both are based on the properties of the Fourier transform; they do not require the explicit use of structure invariants and seminvariants, or a deep knowledge of their properties. The reader should not, however, conclude that the invariance and seminvariance concepts are not necessary in the handling of these approaches, on the contrary, understanding these basic concepts is essential to the appreciation of these new methods.

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Kumar Sharma, Ajay, Priyanka Shaw, Aman Kalonia, et al. "Recent Perspectives in Radiation-Mediated DNA Damage and Repair: Role of NHEJ and Alternative Pathways." In DNA - Damages and Repair Mechanisms. IntechOpen, 2021. http://dx.doi.org/10.5772/intechopen.96374.

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Radiation is one of the causative agents for the induction of DNA damage in biological systems. There is various possibility of radiation exposure that might be natural, man-made, intentional, or non-intentional. Published literature indicates that radiation mediated cell death is primarily due to DNA damage that could be a single-strand break, double-strand breaks, base modification, DNA protein cross-links. The double-strand breaks are lethal damage due to the breakage of both strands of DNA. Mammalian cells are equipped with strong DNA repair pathways that cover all types of DNA damage. One of the predominant pathways that operate DNA repair is a non-homologous end-joining pathway (NHEJ) that has various integrated molecules that sense, detect, mediate, and repair the double-strand breaks. Even after a well-coordinated mechanism, there is a strong possibility of mutation due to the flexible nature in joining the DNA strands. There are alternatives to NHEJ pathways that can repair DNA damage. These pathways are alternative NHEJ pathways and single-strand annealing pathways that also displayed a role in DNA repair. These pathways are not studied extensively, and many reports are showing the relevance of these pathways in human diseases. The chapter will very briefly cover the radiation, DNA repair, and Alternative repair pathways in the mammalian system. The chapter will help the readers to understand the basic and applied knowledge of radiation mediated DNA damage and its repair in the context of extensively studied NHEJ pathways and unexplored alternative NHEJ pathways.

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Du, Dawei, and Dan Simon. "Biogeography-Based Optimization for Large Scale Combinatorial Problems." In Efficiency and Scalability Methods for Computational Intellect. IGI Global, 2013. http://dx.doi.org/10.4018/978-1-4666-3942-3.ch010.

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Biogeography-based optimization (BBO) is a recently-developed heuristic algorithm that has shown impressive performance and efficiency over many standard benchmarks. The application of BBO is still limited because it was only developed four years ago. The objective of this chapter is to expand the application of BBO to large scale combinatorial problems. This chapter addresses the solution of combinatorial problems based on BBO combined with five techniques: (1) nearest neighbor algorithm (NNA), (2) crossover methods designed for traveling salesman problems (TSPs), (3) local optimization methods, (4) greedy methods, and (5) density-based spatial clustering of applications with noise (DBSCAN). This chapter also provides a discussion about the advantages and disadvantages for each of these five techniques when used with BBO, and describes the construction of a combinatorial solver based on BBO. In the end, a framework is proposed for large scale combinatorial problems based on hybrid BBO. Based on four benchmark problems, the experimental results demonstrate the quality and efficiency of our framework. On average, the algorithm reduces costs by over 69% for a 2152-city TSP compared to other methods: genetic algorithm (GA), ant colony optimization (ACO), nearest neighbor algorithm (NNA), and simulated annealing (SA). Convergence time for the algorithm is only 28.56 sec on a 1.73-GHz quad core PC with 6 GB of RAM . The algorithm also demonstrated good results for small and medium sized problems such as ulysses16 (16-city TSP, where we obtained the best performance), st70 (70-city TSP, where the second best performance was obtained), and rat575 (575-city TSP, where the second best performance was obtained).

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"The simplest and currently the most widely adopted method to obtain 16S rRNA genes from the environment is through the use of PCR. rRNA genes can be amplified directly from the total community DNA using rRNA-specific primers, and then cloned using standard methods (Giovannoni et al. 1990). By taking advantage of the highly conserved nature of rRNA, universal primers capable of annealing to rRNA genes from all three domains (Archaea, Bacteria, Eukarya) or primers designed to amplify rRNA genes from a particular group of organisms can be used. Following PCR amplification, the amplified products can be cloned. Commercially available kits exploit the fact that PCR-amplified products have an overhanging 3' deoxyadenosine residue at each end when certain DNA polymerases are used. This allows cloning of the product into a sequencing-ready vector containing a complementary deoxy-thymidine overhang, in many cases, without requiring the product to be purified or further modified. Alternatively, the PCR products can be cloned by "filling" overhanging residues followed by blunt-end ligation procedures." In Recent Advances in Marine Biotechnology, Vol. 8. CRC Press, 2003. http://dx.doi.org/10.1201/9781482279986-14.

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Conference papers on the topic "End-to-end annealing"

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Sokolov, Mikhail A., William L. Server, and Randy K. Nanstad. "Thermal Annealing of Reactor Pressure Vessels." In ASME 2015 Pressure Vessels and Piping Conference. American Society of Mechanical Engineers, 2015. http://dx.doi.org/10.1115/pvp2015-45783.

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Some of the current fleet of nuclear power plants is poised to reach their end of life and will require an operating life time extension. Therefore, the main structural components, including the reactor pressure vessel (RPV), will be subject to higher neutron exposures than originally planned. These longer operating times raise serious concerns regarding our ability to manage the reliability of RPV steels at such high doses. Thermal annealing is the only option that can, to some degree, recover irradiated beltline region transition temperature shift and recover upper shelf energy properties lo

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Skalitzky, Amanda, Stuart Coats, Ramsis Farag, Austin Gurley, and David Beale. "Machine Design for Multiscale Nitinol Annealment Process and End Product Performance Analysis." In ASME 2020 Conference on Smart Materials, Adaptive Structures and Intelligent Systems. American Society of Mechanical Engineers, 2020. http://dx.doi.org/10.1115/smasis2020-2290.

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Abstract The functional properties of Nitinol (NiTi) are set by composition, production process, and post-production heat treatment and cold working. Post-production heat treating is dependent on two main parameters: anneal temperature and aging time. Most heat-treating processes performed by researchers generally consist of simple temperature soaks at specified aging times. However, there are drawbacks to this method. More complex heat treatments can result in performance improvements, but they are difficult to implement and often proprietary to manufacturers and therefore not widely used by

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Skorupa, Wolfgang, Wolfgang Anwand, and Thoralf Gebel. "Energy Pulse Modification of Electronic Materials: From Electronics via Photonics to Other Advanced Materials." In ASME 2009 International Manufacturing Science and Engineering Conference. ASMEDC, 2009. http://dx.doi.org/10.1115/msec2009-84096.

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Regarding electronic materials there is a clear and increasing interest in energy pulse modification of materials, especially also thermal processing far below one second, i.e. the lower limit of RTP (Rapid Thermal Processing) called spike annealing. It is the world of processing in the millisecond or nanosecond range. In the past, this was mainly driven by the need of suppressing the so-called Transient Enhanced Diffusion for advanced boron-implanted shallow pn-junctions in the front-end silicon chip technology. Meanwhile the interest in flash lamp annealing (FLA) in the millisecond range spr

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Gandikota, Varadaraju A., Viswanathan Madhavan, and Steven J. Hooper. "Analysis of Multiple Stage Hydroforming of Sheet Metal With Intermediate Annealing." In ASME 1998 Design Engineering Technical Conferences. American Society of Mechanical Engineers, 1998. http://dx.doi.org/10.1115/detc98/cie-5514.

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Abstract This paper presents the development of a finite element simulation of multistage hydroforming of sheet metal parts with annealing between forming stages, implemented using the commercial explicit dynamic code LS-DYNA. In each of the hydroforming stages, the sheet is formed to the shape of the die used in that stage by the application of fluid pressure on the top surface of the sheet. At the end of each stage, the stresses in the part are relieved and changes in material properties due to various heat treatments are accommodated while maintaining the deformed geometry of the part, incl

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Cody, Jonathan W., and Sungwon S. Kim. "Effects of Annealing Parameters on Nickel Catalyst Nanoparticle Size for Carbon Nanotube Synthesis Applications." In ASME 2016 International Mechanical Engineering Congress and Exposition. American Society of Mechanical Engineers, 2016. http://dx.doi.org/10.1115/imece2016-65514.

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The properties of carbon nanotubes are dependent, in part, on the size of the catalyst metal nanoparticles from which the carbon nanotubes are grown. Annealing is a common technique for forming the catalyst nanoparticles from deposited films. While there is ample work connecting catalyst film properties or catalyst nanoparticle properties to carbon nanotube growth outcomes, the control of catalyst nanoparticle size by means other than the variation of initial film thickness is less explored. This work develops an empirical correlation for the control of nickel nanoparticle equivalent diameter

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Tai, K. K., Yuyi Lin, and L. X. Wang. "Knowledge-Based Mechanical Spring Design System." In ASME 1995 15th International Computers in Engineering Conference and the ASME 1995 9th Annual Engineering Database Symposium collocated with the ASME 1995 Design Engineering Technical Conferences. American Society of Mechanical Engineers, 1995. http://dx.doi.org/10.1115/cie1995-0813.

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Abstract Expert systems are best known for qualitative or heuristic reasoning capability. However, the design of high performance and critical mechanical components, such as automotive valve springs, requires that precise and quantitative issues be resolved. This paper discusses the extended use of an expert system shell for mechanical spring design automation. An expert system shell is utilized as a user friendly front end and a binding agent among system components. Building blocks of the complete system include a product information data base which is provided by commercial manufacturers, a

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Lei, Nan, Pengfei Li, Wei Xue, and Jie Xu. "Gate-Free Graphene-Based Sensor for pH Monitoring." In ASME 2011 International Mechanical Engineering Congress and Exposition. ASMEDC, 2011. http://dx.doi.org/10.1115/imece2011-65166.

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Graphene, as an ideal two-dimensional material, holds great potential for building high-performance sensors. Traditional microfabrication processes, such as lithography and etching, often require multiple complex steps including masking and aligning. Moreover, the graphene is often configured as the semiconducting material in transistors, which add complexity to the system. In this paper, we report the fabrication and characterization of a simple gate-free graphene device. The graphene sheets are made by mechanical exfoliation from bulk graphite and then placed onto a silicon wafer with a ther

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Sancaktar, E., N. Negandhi, and S. Adwani. "Evaluation of Processing Effects in Injection Molded Thermoplastics Using Excimer Laser." In ASME 2004 International Mechanical Engineering Congress and Exposition. ASMEDC, 2004. http://dx.doi.org/10.1115/imece2004-59356.

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The ablation behavior of amorphous (polystyrene (PS), and polycarbonate (PC)) and crystalline (poly(ethylene terephthalate) (PET), and glass filled poly(butylenes terephthalate) (PBT)) polymers by 248 nm KrF excimer laser irradiation were investigated for different injection molding conditions namely, injection flow rate, injection pressure, and mold temperature, as a possible method to evaluate the processing effects in the specimens. For this purpose, dumb-bell shaped samples were injection molded at different sets of processing conditions, and weight loss measurements were carried out for t

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Rieg, Claude, Ralf Ahlstrand, Michel Bieth, et al. "Neutron Embrittlement of VVER 1000 and 440/213 RPVs: Learning From EC Projects on RPV Integrity." In ASME/JSME 2004 Pressure Vessels and Piping Conference. ASMEDC, 2004. http://dx.doi.org/10.1115/pvp2004-2970.

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Since 1991 the European Commission has financed a significant number of Technical Assistance Projects to the Commonwealth of Independent States (TACIS) and EURATOM R&D actions addressing the main safety issues on RPV material embrittlement and integrity assessment. Since the VVER 440 reactors of the reference series 213 are made from recognised neutron embrittlement resistant materials and include comprehensive surveillance programmes, a standard plant life management procedure can be applied to address long-term concerns, mostly aiming at reducing uncertainties in the assessment technique

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Duchnowski, Edward M., Seokbin Seo, and Nicholas R. Brown. "Uncertainty Quantification for the Development of Mechanistic Hydride Behavior Model for Spent Fuel Cladding Storage and Transportation." In 2020 International Conference on Nuclear Engineering collocated with the ASME 2020 Power Conference. American Society of Mechanical Engineers, 2020. http://dx.doi.org/10.1115/icone2020-16812.

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Abstract During operation of light water reactors hydrogen from the primary coolant is absorbed within the zirconium cladding and is able to migrate and redistribute within the cladding. The hydrogen in solid solution is able to precipitate, forming zirconium hydrides which results in a decrease of ductility of the cladding and ultimately an increase in likelihood of cladding failure, especially in conditions such as transport or storage of nuclear fuel rods. In collaboration with other universities, industries, and national laboratories the overarching goal of this project is to enhance the d

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