Relevant bibliographies by topics / Endomembrane system

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  1. Journal articles
  2. Dissertations / Theses
  3. Books
  4. Book chapters

Academic literature on the topic 'Endomembrane system'

Author: Grafiati
Published: 4 June 2021
Last updated: 18 February 2022

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Journal articles on the topic "Endomembrane system"

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Martínez Jaramillo, Catalina, and Claudia Milena Trujillo Vargas. "LRBA in the endomembrane system." Colombia Médica 49, no. 3 (September 1, 2018): 236–43. http://dx.doi.org/10.25100/cm.v49i3.3802.

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Bi-allelic mutations in LRBA (from Lipopolysaccharide-responsive and beige-like anchor protein) result in a primary immunodeficiency with clinical features ranging from hypogammaglobulinemia and lymphoproliferative syndrome to inflammatory bowel disease and heterogeneous autoimmune manifestations. LRBA deficiency has been shown to affect vesicular trafficking, autophagy and apoptosis, which may lead to alterations of several molecules and processes that play key roles for immunity. In this review, we will discuss the relationship of LRBA with the endovesicular system in the context of receptor trafficking, autophagy and apoptosis. Since these mechanisms of homeostasis are inherent to all living cells and not only limited to the immune system and also, because they are involved in physiological as well as pathological processes such as embryogenesis or tumoral transformation, we envisage advancing in the identification of potential pharmacological agents to manipulate these processes.
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Harris, N. "Organization of the Endomembrane System." Annual Review of Plant Physiology 37, no. 1 (June 1986): 73–92. http://dx.doi.org/10.1146/annurev.pp.37.060186.000445.

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Soltys, B. J., M. Falah, and R. S. Gupta. "Identification of endoplasmic reticulum in the primitive eukaryote Giardia lamblia using cryoelectron microscopy and antibody to Bip." Journal of Cell Science 109, no. 7 (July 1, 1996): 1909–17. http://dx.doi.org/10.1242/jcs.109.7.1909.

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Giardia lamblia trophozoites contain a complex endomembrane system as demonstrated by fluorescence and cryoelectron microscopy. The endomembrane system was weakly detected in live cells using the fluorescent membrane dye 3,3′-dihexyloxacarbocyanine iodide. The definitive identification of endoplasmic reticulum required the development of a molecular label. We expressed Giardial Bip in Escherichia coli and raised a polyclonal antibody to the purified protein. In western blots, the antibody was specific for Giardial Bip and did not react with human, monkey and rodent homologs. By immunofluorescence microscopy in methanol fixed cells the antibody visualized tubular structures and other subcellular components that required characterization by electron microscopy. Using cryotechniques we directly demonstrate the presence of a complex endomembrane system at the ultrastructural level. In conjunction with Bip immunogold labeling of cryosections we identify: (1) endoplasmic reticulum cisternae and tubules; (2) stacked perinuclear membranes; and (3) Bip presence in the nuclear envelope. Both the endoplasmic reticulum and nuclear envelope were found either with or without a cleft region suggesting each may contain common specialized sub-regions. In stacked perinuclear membranes, which may represent either multilamellar endoplasmic reticulum or a Golgi apparatus, Bip labeling was restricted to peripheral layers, also suggesting specialized sub-regions. Labeled endomembrane systems could be observed associated with microtubule structures, including axonemes and the adhesive disk. The presence of an extensive endomembrane system in Giardia lamblia, which represents one of the earliest diverging eukaryotic species, supports the view that both the nucleus and endomembrane system co-evolved in a common ancestor of eukaryotic cells.
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Shen, Jinbo, Yonglun Zeng, Xiaohong Zhuang, Lei Sun, Xiaoqiang Yao, Peter Pimpl, and Liwen Jiang. "Organelle pH in the Arabidopsis Endomembrane System." Molecular Plant 6, no. 5 (September 2013): 1419–37. http://dx.doi.org/10.1093/mp/sst079.

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Kumar, A., and B. McClure. "Pollen-pistil interactions and the endomembrane system." Journal of Experimental Botany 61, no. 7 (April 1, 2010): 2001–13. http://dx.doi.org/10.1093/jxb/erq065.

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Day, Kasey J., Jason C. Casler, and Benjamin S. Glick. "Budding Yeast Has a Minimal Endomembrane System." Developmental Cell 44, no. 1 (January 2018): 56–72. http://dx.doi.org/10.1016/j.devcel.2017.12.014.

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Grissom, James H., Verónica A. Segarra, and Richard J. Chi. "New Perspectives on SNARE Function in the Yeast Minimal Endomembrane System." Genes 11, no. 8 (August 6, 2020): 899. http://dx.doi.org/10.3390/genes11080899.

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Saccharomyces cerevisiae is one of the best model organisms for the study of endocytic membrane trafficking. While studies in mammalian cells have characterized the temporal and morphological features of the endocytic pathway, studies in budding yeast have led the way in the analysis of the endosomal trafficking machinery components and their functions. Eukaryotic endomembrane systems were thought to be highly conserved from yeast to mammals, with the fusion of plasma membrane-derived vesicles to the early or recycling endosome being a common feature. Upon endosome maturation, cargos are then sorted for reuse or degraded via the endo-lysosomal (endo-vacuolar in yeast) pathway. However, recent studies have shown that budding yeast has a minimal endomembrane system that is fundamentally different from that of mammalian cells, with plasma membrane-derived vesicles fusing directly to a trans-Golgi compartment which acts as an early endosome. Thus, the Golgi, rather than the endosome, acts as the primary acceptor of endocytic vesicles, sorting cargo to pre-vacuolar endosomes for degradation. The field must now integrate these new findings into a broader understanding of the endomembrane system across eukaryotes. This article synthesizes what we know about the machinery mediating endocytic membrane fusion with this new model for yeast endomembrane function.
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Titorenko, Vladimir I., and Robert T. Mullen. "Peroxisome biogenesis: the peroxisomal endomembrane system and the role of the ER." Journal of Cell Biology 174, no. 1 (June 26, 2006): 11–17. http://dx.doi.org/10.1083/jcb.200604036.

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Peroxisomes have long been viewed as semiautonomous, static, and homogenous organelles that exist outside the secretory and endocytic pathways of vesicular flow. However, growing evidence supports the view that peroxisomes actually constitute a dynamic endomembrane system that originates from the endoplasmic reticulum. This review highlights the various strategies used by evolutionarily diverse organisms for coordinating the flow of membrane-enclosed carriers through the peroxisomal endomembrane system and critically evaluates the dynamics and molecular mechanisms of this multistep process.
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Tsyrkunov, V. M., V. P. Andreev, and R. I. Kravchuk. "CLINICAL MORPHOLOGY OF THE LIVER: HEPATOCYTES, ENDOMEMBRANE SYSTEM." Hepatology and Gastroenterology 3, no. 1 (2019): 28–42. http://dx.doi.org/10.25298/2616-5546-2019-3-1-28-42.

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Martone, Maryann E., Victoria M. Simpliciano, Ying Zhang, Thomas J. Deerinck, and Mark H. Ellisman. "Structure and function of the neuronal endomembrane system." Proceedings, annual meeting, Electron Microscopy Society of America 51 (August 1, 1993): 98–99. http://dx.doi.org/10.1017/s0424820100146333.

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Components of the endomembrane system in a variety of cell types appear to function in the storage and release of calcium similar to the muscle sarcoplasmic reticulum. Many proteins involved in intracellular calcium regulation in skeletal or smooth muscle, e.g. Ca++ ATPase, calsequestrin, the inositol l,4,5,trisphosphate (TP3) receptor and the ryanodine binding protein, are found in the nervous system where they are particularly abundant within the smooth endoplasmic reticulum (SER) of cerebellar Purkinje neurons. Immunolocalization studies suggest, however, that calcium regulatory proteins are not uniformly distributed within the SER but are concentrated in or excluded from certain domains. For example, the IP3 and ryanodine receptors, two distinct calcium channels which mediate calcium release by different ligands, are found associated with the SER in cell bodies and dendrites of chick cerebellum but only the IP3 receptor is found within dendritic spines. These results are consistent with evidence that cells may possess multiple intracellular calcium stores that are pharmacologically, spatially and perhaps physically distinct.
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Dissertations / Theses on the topic "Endomembrane system"

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Holmgren, Benjamin T. "Connecting Systemic RNAi to the Endomembrane System in Caenorhabditis elegans." Doctoral thesis, Uppsala universitet, Mikrobiologi, 2017. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-320897.

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RNA interference (RNAi) is a gene regulation mechanism conserved among eukaryotes. To silence gene expression, RNAi relies on a short single-stranded guide RNA to steer the RNA-induced Silencing Complex (RISC) to mRNAs with guide strand-complementary sequences. RNAi is a highly membrane-associated process. The RISC complex is likely loaded at the rough Endoplasmic Reticulum, where it can bind to and degrade mRNAs. Components of the RISC complex also colocalize to late endosomes, and the efficiency of RNAi-mediated silencing is affected by changes in late endosome to lysosome fusion. RNAi can be systemic and inherited, effecting gene silencing in distal tissues and in the offspring. In this thesis, the model organism Caenorhabditis elegans was used to identify and characterize factors connecting systemic and inherited RNAi to the endomembrane system. We identify two SNARE proteins, SEC-22 and SYX-6, that both act as negative regulators of RNAi. SNAREs are necessary for vesicle fusion. Both SEC-22 and SYX-6 localize to late endosomes, and both interact with systemic RNAi protein SID-5 in a yeast two-hybrid (Y2H) screen. We find that in addition to its function in systemic RNAi, SID-5 is required for proper maturation of late endosomes. Furthermore, we identify the putative RNA-binding protein C12D8.1 as a novel regulator of RNAi inheritance. Mutant C12D8.1 animals will have enhanced inheritance of RNAi silencing, which negatively affects the ability of the progeny to silence new targets using RNAi. Finally, we describe a novel, object-based method for estimating significance in colocalization studies. This method helped us describe and quantify spatial relations between fluorophore-labeled proteins in situations where such analyses would otherwise be impossible. In conclusion, the work presented here further elucidates the connection between cellular RNAi, the endomembrane system, and the outside world.
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Zhao, Yani. "Systemic RNAi Relies on the Endomembrane System in Caenorhabditis elegans." Doctoral thesis, Uppsala universitet, Mikrobiologi, 2017. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-330894.

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The membrane system of a eukaryotic cell is a large and complex system handling the transport, exchange and degradation of many kinds of material. Recent research shows that double-stranded RNA (dsRNA) mediated gene silencing (RNA interference) is a membrane related process. After long dsRNA is processed to small interfering RNA (siRNA) by Dicer, the guide strand and passenger strand are separated in the RNA induced silencing complex (RISC) by Argonaute. The process of loading siRNA into RISC has been suggested to occur at the rough Endoplasmic Reticulum (rER).The components of RISC also associate with late endosomes/multivesicular bodies (MVBs). Furthermore, disturbing the balance between late endosomes/MVBs and lysosomes has been shown to affect the efficiency of silencing. We use the nematode Caenorhabditis elegans as our model organism to study two questions: how does membrane transport affect RNAi and spreading of RNAi from the recipient cells to other tissues (systemic RNAi); and how does RNA transport contribute to the multigenerational silencing induced by dsRNA (RNAi inheritance)? Using SID-5, a protein required for efficient systemic RNAi, as bait in a yeast two-hybrid (Y2H) screen, we got 32 SID-5 interacting candidate proteins. Two of these are the SNARE protein SEC-22 and the putative RNA binding protein C12D8.1. In two additional Y2H screens, we found that SID-5 interacts with multiple syntaxin SNAREs, including SYX-6, whereas SEC-22 only interacts with SYX-6. SNAREs usually function in vesicle fusion processes. We found the two SNARE proteins SEC-22 and SYX-6 to be negative regulators of RNAi and to localize to late endosomes/MVBs. In addition, loss of sid-5 leads to an endosome maturation defect. Finally, we found that the putative RNA binding protein C12D8.1 negatively regulates RNAi inheritance and that C12D8.1 mutant animals show impaired RNAi upon targeting a new gene. Taken together, the results presented in this thesis provide us with more evidence for the connection of the membrane transport system and RNAi. The identification of a putative negative regulator of RNAi inheritance further enriches this research field.
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Breakspear, Andrew. "Using GFP-constructs to study the endomembrane system of Aspergillus nidulans." Thesis, Bangor University, 2005. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.409839.

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Paul, Matthew John. "The role of clathrin in the endomembrane system of plant cells." Thesis, University of Warwick, 2006. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.436645.

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Elamawi, Rabab. "Study of the modifications of the endomembrane system during Grapevine fanleaf virus replication." Université Louis Pasteur (Strasbourg) (1971-2008), 2005. http://www.theses.fr/2005STR13138.

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Früholz, Simone [Verfasser], and Peter [Akademischer Betreuer] Pimpl. "Analysis of the bidirectional VSR-mediated transport in the plant endomembrane system / Simone Früholz ; Betreuer: Peter Pimpl." Tübingen : Universitätsbibliothek Tübingen, 2018. http://d-nb.info/1196700893/34.

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Burén, Stefan. "Targeting and function of CAH1 : Characterization of a novel protein pathway to the plant cell chloroplast." Doctoral thesis, Umeå universitet, Fysiologisk botanik, 2010. http://urn.kb.se/resolve?urn=urn:nbn:se:umu:diva-30509.

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The chloroplast is the organelle within a plant cell where photosynthesis takes place. This organelle originates from a cyanobacterium that was engulfed by a eukaryotic cell. During the transition from endosymbiont to organelle most of the cyanobacterial genes were transferred to the nuclear genome of the host cell, resulting in a chloroplast with a much reduced genome that requires massive import of gene products (proteins) back to the organelle. The majority of these proteins are translated in the cytosol as pre-proteins containing targeting information that directs them to a translocon complex in the chloroplast envelope, the Toc-Tic system, through which these proteins are transported. We have identified a protein in the model plant Arabidopsis thaliana, CAH1, that is trafficked via the endomembrane system (ER/Golgi apparatus) to the chloroplast instead of using the Toc-Tic machinery. This transport is partly mediated by canonical vesicle trafficking elements involved in ER to Golgi transport, such as Sar1 and RabD GTPases. Analysis of point mutated variants of CAH1 showed that both N-linked glycans and an intra-molecular disulphide bridge are required for correct folding, trafficking and function of the protein. Since chloroplasts lack N-glycosylation machinery, we propose that a route for chloroplast proteins that require endomembrane-specific post-translational modifications for their functionality exists as a complement to the Toc-Tic system. We also show that mutant plants with disrupted CAH1 gene expression have reduced rates of CO2 uptake and accumulate lower amounts of starch compared to wild-type plants, indicating an important function of the CAH1 protein for the photosynthetic capacity of Arabidopsis. Further study of CAH1 will not only be important to reveal its role in photosynthesis, but characterization of this novel protein pathway to the chloroplast can also shed light on how the plant cell evolved and clarify the purpose of keeping several chloroplast import pathways working in parallel. In addition, knowledge about this pathway could increase the opportunities for using plants as bio-factories for production of recombinant glycoproteins, which make up the vast majority of the bio-pharmaceutical molecules.
Kloroplasten är den organell i växtcellen där fotosyntesen sker. Denna organell härstammar från en cyanobakterie som togs upp av en eukaryot cell. Under omvandlingen från endosymbiont till organell har de flesta av den ursprungliga cyanobakteriens gener flyttats över till växtcellens eget kärngenom, vilket resulterat i en kloroplast som endast kan producera ett fåtal av de proteiner den behöver och som istället kräver att en mängd genprodukter (proteiner) transporteras tillbaka till organellen. De flesta av dessa proteiner syntetiseras i cytosolen som polypeptider innehållande en speciell signal för kloroplasten, och tranporteras över kloroplastens dubbelmembran (envelop) med hjälp av ett specifikt importsystem (Toc-Tic). Vi har identifierat ett protein i modellväxten Arabidopsis thaliana (CAH1) som istället för att använda Toc-Tic tranporteras via det endomembrana systemet (ER/Golgi). Transporten sker delvis med hjälp av faktorer involverade i normal vesikeltransport, t.ex. Sar1 och RabD GTPaser (mellan ER och Golgi). Genom att uttycka och analysera punktmuterade varianter av CAH1 har vi kunnat visa att både sockergrupper kopplade till proteinet, samt en intern svavelbrygga, är nödvändiga för korrekt veckning, transport och funktion av proteinet. Då kloroplasten saknar eget maskineri för att koppla sådana sockergrupper till proteiner så föreslår vi att anledningen till att denna rutt existerar, som ett komplement till Toc-Tic, är för att proteiner beroende av denna typ av modifiering ska kunna finnas i kloroplasten. Vi visar också att muterade växter som inte kan uttrycka genen som kodar för CAH1 uppvisar lägre upptag av CO2, samt ackumulerar mindre stärkelse än vildtypplantor, vilket antyder att CAH1 har en viktig funktion för den fotosyntetiska förmågan hos Arabidopsis. För att kunna fastställa den exakta funktionen för CAH1 kommer ytterliga studier att vara nödvändiga. En fördjupad karaktärisering av transportvägen som CAH1 följer till kloroplasten kan dessutom ge kunskap om hur växtcellen uppkom, samt besvara varför flera importvägar arbetar till synes parallellt med varandra. Kunskap om denna transportväg kan även bidra med användbar information i försöken att nyttja växter till att uttrycka rekombinanta N-glykosylerade proteiner, t. ex. antikroppar och vacciner.
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Liu, Xiaojuan [Verfasser], and Uwe-G. [Akademischer Betreuer] Maier. "Genetic compartmentalization in the complex plastid of Amphidinium carterae and the endomembrane system (ES) in Phaeodactylum tricornutum / Xiaojuan Liu. Betreuer: Uwe-G. Maier." Marburg : Philipps-Universität Marburg, 2015. http://d-nb.info/108029841X/34.

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Cibrario, Luigi. "Evolutionary history of clathrin-mediated endocytosis and the eisosome." Thesis, University of Exeter, 2011. http://hdl.handle.net/10036/3484.

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Endocytosis is both an ancient and a diverse feature of the eukaryotic cell. Studying how it evolved can provide insight into the nature of the last common eukaryotic ancestor, and the diversification of eukaryotes into the known extant lineages. In this thesis, I present two studies on the evolution of endocytosis. In the first part of the thesis I report results from a large-scale, phylogenetic and comparative genomic study of clathrin-mediated endocytosis (CME). The CME pathway has been studied to a great level of detail in yeast to mammal model organisms. Several protein families have now been identified as part of the complex set of protein-protein and protein-lipid interactions which mediate endocytosis. To investigate how such complexity evolved, first, I defined the modular nature of the CME interactome (CME-I) by literature review, and then I carried out a systematic phylogenetic and protein domain architecture analysis of the proteins involved. These data were used to construct a model of the evolution of the CME-I network, and to map the expansion of the network's complexity to the eukaryotic tree of life. In the second part of the thesis, I present results from evolutionary and functional studies of the eisosome, a protein complex which has been proposed to regulate the spatial distribution of endocytosis in S. cerevisiae. The phylogeny of eisosomes components Pil1 and Lsp1 reported here, suggests that eisosomes are likely to have originated at the base of the fungi, and then diversified significantly via multiple gene duplications. I thus studied the localisation and function of Pil1 and Lsp1 homologues in Magnaporthe oryzae to investigate the role of eisosomes in filamentous fungi. Results suggests that eisosomes are linked with septal formation and integrity in M. oryzae, and that the septal specific Pil2 paralogue was lost in budding yeasts. Together, the data presented in this thesis describe the evolutionary history of a complex biological system, but also highlights the problem of asymmetry in the understanding of endocytic diversity in the eukaryotes.
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Kumar, Neela Shiva. "Cellular Mechanisms of Gravitropism in ARG1 (Altered Response to Gravity) Mutants of Arabidopsis Thaliana." Oxford, Ohio : Miami University, 2008. http://rave.ohiolink.edu/etdc/view?acc%5Fnum=miami1218220626.

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Books on the topic "Endomembrane system"

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Titorenko, Vladimir I., and Richard A. Rachubinski, eds. Origin and spatiotemporal dynamics of the peroxisomal endomembrane system. Frontiers SA Media, 2015. http://dx.doi.org/10.3389/978-2-88919-464-3.

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Book chapters on the topic "Endomembrane system"

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Pavelka, Margit, and Jürgen Roth. "Endomembrane System of Dinoflagellates." In Functional Ultrastructure, 26–27. Vienna: Springer Vienna, 2010. http://dx.doi.org/10.1007/978-3-211-99390-3_15.

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Morré, D. James. "Evolution of the Endomembrane System." In ACS Symposium Series, 142–62. Washington, DC: American Chemical Society, 1994. http://dx.doi.org/10.1021/bk-1994-0562.ch008.

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Ibl, Verena, Jenny Peters, Eva Stöger, and Elsa Arcalís. "Imaging the ER and Endomembrane System in Cereal Endosperm." In Methods in Molecular Biology, 251–62. New York, NY: Springer New York, 2017. http://dx.doi.org/10.1007/978-1-4939-7389-7_20.

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Rubilar-Hernández, Carlos, Glenn R. Hicks, and Lorena Norambuena. "Chemical Genomics Screening for Biomodulators of Endomembrane System Trafficking." In Methods in Molecular Biology, 251–64. New York, NY: Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-1420-3_19.

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Bennett, A. B., and K. W. Osteryoung. "Protein transport and targeting within the endomembrane system of plants." In Plant Genetic Engineering, 199–237. Dordrecht: Springer Netherlands, 1991. http://dx.doi.org/10.1007/978-94-009-0403-3_7.

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Ellisman, Mark, Rama Ranganathan, Thomas Deerinck, Stephen Young, Robert Terry, and Suzanne Mirra. "Neuronal Fibrillar Cytoskeleton and Endomembrane System Organization in Alzheimer’s Disease." In Advances in Behavioral Biology, 61–73. Boston, MA: Springer US, 1987. http://dx.doi.org/10.1007/978-1-4613-1657-2_6.

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Bennett, A. B., and K. W. Osteryoung. "Protein transport and targeting within the endomembrane system of plants." In Plant Genetic Engineering, 199–237. Dordrecht: Springer Netherlands, 1991. http://dx.doi.org/10.1007/978-94-010-9646-1_7.

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Steer, Martin W. "Endomembrane Systems." In Progress in Botany, 10–18. Berlin, Heidelberg: Springer Berlin Heidelberg, 1991. http://dx.doi.org/10.1007/978-3-642-76293-2_2.

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Schoberer, Jennifer, and Stanley W. Botchway. "Investigating Protein–Protein Interactions in the Plant Endomembrane System Using Multiphoton-Induced FRET-FLIM." In Methods in Molecular Biology, 81–95. New York, NY: Springer New York, 2014. http://dx.doi.org/10.1007/978-1-4939-1420-3_6.

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Urbina, Daniela, Patricio Pérez-Henríquez, and Lorena Norambuena. "The Use of Multidrug Approach to Uncover New Players of the Endomembrane System Trafficking Machinery." In Methods in Molecular Biology, 131–43. Totowa, NJ: Humana Press, 2013. http://dx.doi.org/10.1007/978-1-62703-592-7_14.

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