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Books on the topic 'Environmental sequencing'

Author: Grafiati

Published: 4 June 2021

Last updated: 26 July 2025

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1

Mello, Lois K. Sequencing Batch Reactors: An Overview. Nova Science Publishers, Incorporated, 2019.

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2

Joly, Dominique, and Denis Faure. Insight on Environmental Genomics: The High-Throughput Sequencing Revolution. Elsevier, 2016.

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3

Joly, Dominique, and Denis Faure. Insight on Environmental Genomics: The High-Throughput Sequencing Revolution. Elsevier, 2016.

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4

Taberlet, Pierre, Aurélie Bonin, Lucie Zinger, and Eric Coissac. Environmental DNA. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198767220.001.0001.

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Environmental DNA (eDNA), i.e. DNA released in the environment by any living form, represents a formidable opportunity to gather high-throughput and standard information on the distribution or feeding habits of species. It has therefore great potential for applications in ecology and biodiversity management. However, this research field is fast-moving, involves different areas of expertise and currently lacks standard approaches, which calls for an up-to-date and comprehensive synthesis. Environmental DNA for biodiversity research and monitoring covers current methods based on eDNA, with a par

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5

Wastewater Purification: Aerobic Granulation in Sequencing Batch Reactors. CRC, 2007.

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6

Taberlet, Pierre, Aurélie Bonin, Lucie Zinger, and Eric Coissac. Environmental DNA for functional diversity. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198767220.003.0010.

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Chapter 10 “Environmental DNA for functional diversity” discusses the potential of environmental DNA to assess functional diversity. It first focuses on DNA metabarcoding and discusses the extent to which this approach can be used and/or optimized to retrieve meaningful information on the functions of the target community. This knowledge usually involves coarsely defined functional groups (e.g., woody, leguminous, graminoid plants; shredders or decomposer soil organisms; pathogenicity or decomposition role of certain microorganisms). Chapter 10 then introduces metagenomics and metatranscriptom

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7

Bulgaria - Environmental Sequencing Strategies for EU Accession : Priority Public Investments for Wastewater Treatment and Landfill of Waste. Washington, DC, 2004. https://doi.org/10.1596/14393.

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8

Taberlet, Pierre, Aurélie Bonin, Lucie Zinger, and Eric Coissac. The future of eDNA metabarcoding. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198767220.003.0019.

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Environmental DNA-based research is undergoing rapid developments, but its democratization in basic and applied research remains hampered by the biases introduced by molecular approaches, the difficulties in estimating absolute organisms’ abundances, and a lack of general consensus in molecular protocols. Chapter 19 “The future of eDNA metabarcoding” provides an overview of these current challenges and discusses how shotgun sequencing, capture-based methods, inclusion of internal standards, and development of new data repositories could alleviate these limits and facilitate cross-experiments c

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9

Sequenceing Batch Reactor Technology II. IWA Publshing, 2001.

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10

Haiman, Christopher, and David J. Hunter. Genetic Epidemiology of Cancer. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780190676827.003.0004.

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This chapter explores the genetic epidemiology of cancer: the identification and quantification of inherited genetic factors, and their potential interaction with the environment, in the etiology of cancer in human populations. It also describes the techniques used to identify genetic variants that contribute to cancer susceptibility. It describes the older research methods for identifying the chromosomal localization of high-risk predisposing genes, such as linkage analysis within pedigrees and allele-sharing methods, as it is important to understand the foundations of the field. It also revi

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11

Kirchman, David L. Genomes and meta-omics for microbes. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0005.

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The sequencing of entire genomes of microbes grown in pure cultures is now routine. The sequence data from cultivated microbes have provided insights into these microbes and their uncultivated relatives. Sequencing studies have found that bacterial genomes range from 0.18 Mb (intracellular symbiont) to 13 Mb (a soil bacterium), whereas genomes of eukaryotes are much bigger. Genomes from eukaryotes and prokaryotes are organized quite differently. While bacteria and their small genomes often grow faster than eukaryotes, there is no correlation between genome size and growth rates among the bacte

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12

Winchester, Robert, Darren D. O’Rielly, and Proton Rahman. Genetics of psoriatic arthritis. Oxford University Press, 2018. http://dx.doi.org/10.1093/med/9780198737582.003.0006.

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The psoriatic phenotype is clinically heterogeneous with psoriatic arthritis (PsA) itself being heterogeneous. Studies have consistently demonstrated that PsA has a strong genetic component and disease pathogenesis encompasses a complex interplay between genetic, immunological, and environmental factors. In this chapter, we will review the genetics of PsA including the major histocompatibility complex (MHC) region and non-MHC loci. We will detail how susceptibility genes can be grouped into barrier integrity, innate immune response, and adaptive immune response (particularly Th-17 lymphocyte s

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13

Pont Evksinskiy – 2021 : materials of XII All-Russian scientific and applied conference for young scientists on the water systems problems, dedicated to the 150 th anniversary of the Sevastopol Biological Station ‒ A. O. Kovalevsky Institute of Biology of the Southern Seas of RAS, Sevastopol, 20–24 September, 2021. IBSS, 2021. http://dx.doi.org/10.21072/978-5-6044865-8-0.

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The book includes materials of young scientists from Russia and the Republic of Abkhazia, revealing various aspects of modern marine and freshwater biology. Abstracts highlight the results of scientific research in the field of population dynamics and genetic differentiation of aquatic organisms, the features of their life cycle. The book present works on the influence of abiotic and anthropogenic environmental factors on the physiological status of aquaculture species. A number of works describes the capabilities of modern research methods applied in marine and freshwater biological studies,

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14

Taberlet, Pierre, Aurélie Bonin, Lucie Zinger, and Eric Coissac. Analysis of bulk samples. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198767220.003.0018.

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Chapter 18 “Analysis of bulk samples” deals with the particular case of biodiversity surveys based on bulk samples. A bulk sample is an environmental sample containing mainly organisms from the taxonomic group under study, such as insect samples obtained from a Malaise trap, or eukaryote-enriched samples obtained from filtered or size-fractionated water samples. One important characteristic of bulk samples is that they usually provide good-quality DNA in high amounts. Chapter 18 presents several seminal studies based on bulk samples that aimed at monitoring arthropod, nematode, or marine metaz

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15

Tangen, Catherine M., Marian L. Neuhouser, and Janet L. Stanford. Prostate Cancer. Oxford University Press, 2017. http://dx.doi.org/10.1093/oso/9780190238667.003.0053.

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Prostate cancer is the most common solid tumor and the second leading cause of cancer-related mortality in American men. Worldwide, prostate cancer ranks second and fifth as a cause of cancer and cancer deaths, respectively. Despite the international burden of disease due to prostate cancer, its etiology is unclear in most cases. Established risk factors include age, race/ancestry, and family history of the disease. Prostate cancer has a strong heritable component, and genome-wide association studies have identified over 110 common risk-associated genetic variants. Family-based sequencing stud

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16

Halliday, Catriona L., and Sarah E. Kidd. Cryptococcus species. Edited by Christopher C. Kibbler, Richard Barton, Neil A. R. Gow, Susan Howell, Donna M. MacCallum, and Rohini J. Manuel. Oxford University Press, 2017. http://dx.doi.org/10.1093/med/9780198755388.003.0012.

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Cryptococcus neoformans and Cryptococcus gattii are the principal pathogenic species within the genus Cryptococcus and the causative agents of cryptococcosis. Although rare, the incidence of infection due to other Cryptococcus species previously regarded as saprophytes, has increased over the last 40 years. Irrespective of the infecting species, infections are acquired following inhalation from the environment, causing localised or disseminated disease. The severity of disease is dependent on the organism’s virulence factors and the host’s immune response, and the clinical manifestations are i

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17

Lewis, Myles, and Tim Vyse. Genetics of connective tissue diseases. Oxford University Press, 2013. http://dx.doi.org/10.1093/med/9780199642489.003.0042.

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The advent of genome-wide association studies (GWAS) has been an exciting breakthrough in our understanding of the genetic aetiology of autoimmune diseases. Substantial overlap has been found in susceptibility genes across multiple diseases, from connective tissue diseases and rheumatoid arthritis (RA) to inflammatory bowel disease, coeliac disease, and psoriasis. Major technological advances now permit genotyping of millions of single nucleotide polymorphisms (SNPs). Group analysis of SNPs by haplotypes, aided by completion of the Hapmap project, has improved our ability to pinpoint causal ge

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18

Zoromski, Allison K., Steven W. Evans, Heather Davis Gahagan, Verenea J. Serrano, and Alex S. Holdaway. Ethical and Contextual Issues when Collaborating with Educators and School Mental Health Professionals. Edited by John Z. Sadler, K. W. M. Fulford, and Cornelius Werendly van Staden. Oxford University Press, 2014. http://dx.doi.org/10.1093/oxfordhb/9780198732365.013.52.

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Ethical and contextual challenges that psychiatric professionals encounter when working with school professionals are discussed in an effort to maximize effective and ethical psychiatric care. Given the interdisciplinary environment and contextual issues inherent in providing psychiatric services to students; strategies for collaborative interdisciplinary communication are discussed. Several unique issues regarding confidentiality and informed consent when providing mental health services to patients are described. A variety of assessment issues are considered, including issues regarding speci

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19

Kirchman, David L. Community structure of microbes in natural environments. Oxford University Press, 2018. http://dx.doi.org/10.1093/oso/9780198789406.003.0004.

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Community structure refers to the taxonomic types of microbes and their relative abundance in an environment. This chapter focuses on bacteria with a few words about fungi; protists and viruses are discussed in Chapters 9 and 10. Traditional methods for identifying microbes rely on biochemical testing of phenotype observable in the laboratory. Even for cultivated microbes and larger organisms, the traditional, phenotype approach has been replaced by comparing sequences of specific genes, those for 16S rRNA (archaea and bacteria) or 18S rRNA (microbial eukaryotes). Cultivation-independent appro

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20

Linton, Chris, and Susan Howell. Other yeasts. Edited by Christopher C. Kibbler, Richard Barton, Neil A. R. Gow, Susan Howell, Donna M. MacCallum, and Rohini J. Manuel. Oxford University Press, 2017. http://dx.doi.org/10.1093/med/9780198755388.003.0013.

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The yeasts described in this chapter are, in general, rare causes of serious human infection. Many are commonly found in the environment or as human commensals. The chapter provides a very brief summary of the following six yeast genera: Malassezia, Rhodotorula, Saccharomyces, Saprochaete, Sporobolomyces, and Trichosporon. Current taxonomy and significant species are also discussed although many fungal taxonomic groups are being re-evaluated in the light of DNA sequencing data, resulting in the renaming of some species and the regrouping of others. Pathogenicity, epidemiology, and clinical asp

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21

Ward, Phillip, and Shonna Snyder. Core Teaching Practices for Health education. Human Kinetics, 2022. http://dx.doi.org/10.5040/9781718222748.

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Core practices―content-specific practices that offer strategies to support student learning―are common in many subject areas but have been curiously missing for health educators … until now. Core Teaching Practices for Health Education is a compact and precise book that serves up effective core teaching practices for preservice and practicing health educators as well as for health teacher educators. Teachers can apply the evidence-based practical tips and strategies the minute they step into their classrooms; even veteran instructors will discover new teaching tactics that will be useful. Core

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