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Relevant bibliographies by topics / Eukaryote tree of life

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Academic literature on the topic 'Eukaryote tree of life'

Author: Grafiati

Published: 4 June 2021

Last updated: 12 February 2022

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Journal articles on the topic "Eukaryote tree of life"

1

Brown, J. R., and W. F. Doolittle. "Archaea and the prokaryote-to-eukaryote transition." Microbiology and Molecular Biology Reviews 61, no. 4 (1997): 456–502. http://dx.doi.org/10.1128/mmbr.61.4.456-502.1997.

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Since the late 1970s, determining the phylogenetic relationships among the contemporary domains of life, the Archaea (archaebacteria), Bacteria (eubacteria), and Eucarya (eukaryotes), has been central to the study of early cellular evolution. The two salient issues surrounding the universal tree of life are whether all three domains are monophyletic (i.e., all equivalent in taxanomic rank) and where the root of the universal tree lies. Evaluation of the status of the Archaea has become key to answering these questions. This review considers our cumulative knowledge about the Archaea in relatio

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Strassert, Jürgen F. H., Mahwash Jamy, Alexander P. Mylnikov, Denis V. Tikhonenkov, and Fabien Burki. "New Phylogenomic Analysis of the Enigmatic Phylum Telonemia Further Resolves the Eukaryote Tree of Life." Molecular Biology and Evolution 36, no. 4 (2019): 757–65. http://dx.doi.org/10.1093/molbev/msz012.

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AbstractThe resolution of the broad-scale tree of eukaryotes is constantly improving, but the evolutionary origin of several major groups remains unknown. Resolving the phylogenetic position of these “orphan” groups is important, especially those that originated early in evolution, because they represent missing evolutionary links between established groups. Telonemia is one such orphan taxon for which little is known. The group is composed of molecularly diverse biflagellated protists, often prevalent although not abundant in aquatic environments. Telonemia has been hypothesized to represent

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He, Ding, Omar Fiz-Palacios, Cheng-Jie Fu, Johanna Fehling, Chun-Chieh Tsai, and Sandra L. Baldauf. "An Alternative Root for the Eukaryote Tree of Life." Current Biology 24, no. 4 (2014): 465–70. http://dx.doi.org/10.1016/j.cub.2014.01.036.

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Sibbald, Shannon J., and John M. Archibald. "Genomic Insights into Plastid Evolution." Genome Biology and Evolution 12, no. 7 (2020): 978–90. http://dx.doi.org/10.1093/gbe/evaa096.

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Abstract The origin of plastids (chloroplasts) by endosymbiosis stands as one of the most important events in the history of eukaryotic life. The genetic, biochemical, and cell biological integration of a cyanobacterial endosymbiont into a heterotrophic host eukaryote approximately a billion years ago paved the way for the evolution of diverse algal groups in a wide range of aquatic and, eventually, terrestrial environments. Plastids have on multiple occasions also moved horizontally from eukaryote to eukaryote by secondary and tertiary endosymbiotic events. The overall picture of extant photo

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Cavalier-Smith, Thomas, and Ema E.-Yung Chao. "Multidomain ribosomal protein trees and the planctobacterial origin of neomura (eukaryotes, archaebacteria)." Protoplasma 257, no. 3 (2020): 621–753. http://dx.doi.org/10.1007/s00709-019-01442-7.

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AbstractPalaeontologically, eubacteria are > 3× older than neomura (eukaryotes, archaebacteria). Cell biology contrasts ancestral eubacterial murein peptidoglycan walls and derived neomuran N-linked glycoprotein coats/walls. Misinterpreting long stems connecting clade neomura to eubacteria on ribosomal sequence trees (plus misinterpreted protein paralogue trees) obscured this historical pattern. Universal multiprotein ribosomal protein (RP) trees, more accurate than rRNA trees, are taxonomically undersampled. To reduce contradictions with genically richer eukaryote trees and improve eubacte

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Ku, Chuan, and Arnau Sebé-Pedrós. "Using single-cell transcriptomics to understand functional states and interactions in microbial eukaryotes." Philosophical Transactions of the Royal Society B: Biological Sciences 374, no. 1786 (2019): 20190098. http://dx.doi.org/10.1098/rstb.2019.0098.

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Understanding the diversity and evolution of eukaryotic microorganisms remains one of the major challenges of modern biology. In recent years, we have advanced in the discovery and phylogenetic placement of new eukaryotic species and lineages, which in turn completely transformed our view on the eukaryotic tree of life. But we remain ignorant of the life cycles, physiology and cellular states of most of these microbial eukaryotes, as well as of their interactions with other organisms. Here, we discuss how high-throughput genome-wide gene expression analysis of eukaryotic single cells can shed

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Fuerst, John A., and Euan G. Nisbet. "Buds from the tree of life: linking compartmentalized prokaryotes and eukaryotes by a non-hyperthermophile common ancestor and implications for understanding Archaean microbial communities." International Journal of Astrobiology 3, no. 3 (2004): 183–87. http://dx.doi.org/10.1017/s1473550404002150.

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The origin of the first nucleated eukaryote and the nature of the last common ancestor of the three domains of life are major questions in the evolutionary biology of cellular life on Earth, the solutions to which may be linked. Planctomycetes are unusual compartmentalized bacteria that include a membrane-bounded nucleoid. The possibility that they constitute a very deep branch of the domain Bacteria suggests a model for the evolution of the three domains of life from a last common ancestor that was a mesophile or moderate thermophile with a compartmentalized eukaryote-like cell plan. Planctom

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Mills, Daniel B. "The origin of phagocytosis in Earth history." Interface Focus 10, no. 4 (2020): 20200019. http://dx.doi.org/10.1098/rsfs.2020.0019.

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Phagocytosis, or ‘cell eating’, is a eukaryote-specific process where particulate matter is engulfed via invaginations of the plasma membrane. The origin of phagocytosis has been central to discussions on eukaryogenesis for decades, where it is argued as being either a prerequisite for, or consequence of, the acquisition of the ancestral mitochondrion. Recently, genomic and cytological evidence has increasingly supported the view that the pre-mitochondrial host cell—a bona fide archaeon branching within the ‘Asgard’ archaea—was incapable of phagocytosis and used alternative mechanisms to inco

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Foster, Peter G., Cymon J. Cox, and T. Martin Embley. "The primary divisions of life: a phylogenomic approach employing composition-heterogeneous methods." Philosophical Transactions of the Royal Society B: Biological Sciences 364, no. 1527 (2009): 2197–207. http://dx.doi.org/10.1098/rstb.2009.0034.

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The three-domains tree, which depicts eukaryotes and archaebacteria as monophyletic sister groups, is the dominant model for early eukaryotic evolution. By contrast, the ‘eocyte hypothesis’, where eukaryotes are proposed to have originated from within the archaebacteria as sister to the Crenarchaeota (also called the eocytes), has been largely neglected in the literature. We have investigated support for these two competing hypotheses from molecular sequence data using methods that attempt to accommodate the across-site compositional heterogeneity and across-tree compositional and rate matrix

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Williams, Tom A. "Evolution: Rooting the Eukaryotic Tree of Life." Current Biology 24, no. 4 (2014): R151—R152. http://dx.doi.org/10.1016/j.cub.2014.01.026.

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Dissertations / Theses on the topic "Eukaryote tree of life"

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Tsai, Chun-Chieh. "Rooting the eukaryote tree of life." Thesis, University of York, 2009. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.547351.

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He, Ding. "Inferring Ancestry : Mitochondrial Origins and Other Deep Branches in the Eukaryote Tree of Life." Doctoral thesis, Uppsala universitet, Systematisk biologi, 2014. http://urn.kb.se/resolve?urn=urn:nbn:se:uu:diva-231670.

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There are ~12 supergroups of complex-celled organisms (eukaryotes), but relationships among them (including the root) remain elusive. For Paper I, I developed a dataset of 37 eukaryotic proteins of bacterial origin (euBac), representing the conservative protein core of the proto-mitochondrion. This gives a relatively short distance between ingroup (eukaryotes) and outgroup (mitochondrial progenitor), which is important for accurate rooting. The resulting phylogeny reconstructs three eukaryote megagroups and places one, Discoba (Excavata), as sister group to the other two (neozoa). This rejects

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Servin, Jacqueline Ann. "Rooting the universal and eukaryotic trees of life." Diss., Restricted to subscribing institutions, 2009. http://proquest.umi.com/pqdweb?did=1930895851&sid=34&Fmt=2&clientId=1564&RQT=309&VName=PQD.

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Rochette, de Lempdes Nicolas. "Étude de l’origine des eucaryotes par la phylogénie moléculaire." Thesis, Lyon 1, 2014. http://www.theses.fr/2014LYO10144.

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L'origine des eucaryotes est un problème important de la biologie évolutive, pour lequel de nombreuses hypothèses profondément différentes ont été proposées. L'une des stratégies majeures, pour discriminer ces hypothèses, est d'utiliser le fait qu'elles sont associées à des prédictions distinctes quant aux arbres phylogénétiques qui devraient être observés pour les gènes communs aux eucaryotes et aux archées ou aux eucaryotes et aux bactéries. C'est la problématique que j'ai étudiée au cours de ma thèse. J'ai réalisé des analyses phylogénétiques, à l'échelle génomique et à l'aide d'une approch

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McCarthy, Meghan E. "THE LEMON TREE: MY TREE OF LIFE." CSUSB ScholarWorks, 2014. https://scholarworks.lib.csusb.edu/etd/49.

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The Lemon Tree is a collection of poems that arose from my attempt to capture memories of influential experiences in growing up. The poems are written in prose blocks and move in and out of childlike and adult sensibilities, creating the disillusion of time and memory. The poems themselves are comments on the unreliability and limited scope of memory and compare remembrance to dreams. This suggests that time moves more fluidly than the waking world accepts. Through looking back, through prisms, the speaker remembers experiences that impacted her development as we follow her on a journey to com

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Chung, Jiwoong. "Tree of life for orchestra /." College Park, Md. : University of Maryland, 2004. http://hdl.handle.net/1903/2020.

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Thesis (D.M.A.) -- University of Maryland, College Park, 2004.<br>Thesis research directed by: Music. Title from t.p. of PDF. Published by UMI Dissertation Services, Ann Arbor, Mich. Also available in paper.

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Rupp, Nichole A. "Life in a pear tree." Thesis, University of Surrey, 2017. http://epubs.surrey.ac.uk/841586/.

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The novel portion of this project, Life in a Pear Tree, is a fictional autobiography that tells the story of the American author’s short time managing a London pub. To assist in understanding the experience, a fairy tale story is woven through the real life events, inviting the reader to question truth and fact, fantasy and reality. Chapter one of the accompanying critical portion provides a background of fairy tale stories and the issues with defining the term. It also introduces P.L. Travers as an expert in the study of fairy tale and examines her little-known writings on fairy tale and rela

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Beck, James A. "The tree of life motif in Proverbs." Theological Research Exchange Network (TREN), 1986. http://www.tren.com.

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Crawford, Callie Hendricks. "Skeletal anatomy in the chondrichthyan tree of life." Thesis, College of Charleston, 2015. http://pqdtopen.proquest.com/#viewpdf?dispub=1585540.

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<p> Chondrichthyans (sharks, rays, skates, and chimaeras) are a diverse taxonomic clade inhabiting bodies of water all over the world. As a lineage, chondrichthyans split from the other jawed vertebrates 450 million years ago, the most basal split in the gnathostome vertebrate tree. Although they have been studied for centuries, knowledge about these animals lags behind that of many other vertebrate groups. This work uses Computed Tomography (CT) to explore morphological variation across phylogenetically diverse species of chondrichthyans. CT imaging is a nondestructive method for viewing inte

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Kowalska, Jolanta. "Tree of life dance : cultural universals in motion /." Warsaw : Institute of the history of material culture, Polish academy of sciences, 1991. http://catalogue.bnf.fr/ark:/12148/cb374876094.

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Books on the topic "Eukaryote tree of life"

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1947-, Greenaway Theresa, ed. Tree life. Dorling Kindersley, 1992.

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Chartres, Richard. Tree of knowledge, tree of life. Morehouse, 2004.

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Condé, Maryse. Tree of life. Women's Press, 1994.

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Condé, Maryse. Tree of life. Ballantine Books, 1992.

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Arentzen, Thomas, Virginia Burrus, and Glenn Peers. Byzantine Tree Life. Springer International Publishing, 2021. http://dx.doi.org/10.1007/978-3-030-75902-5.

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6

Maynard, Fredelle Bruser. The tree of life. Viking, 1988.

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7

Wayne, Grady, ed. Tree: A life story. Greystone Books, 2004.

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Berger, Melvin. Life in a tree. Newbridge Communications, 1998.

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9

The life tree, poems. Penguin, Viking, 2005.

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10

Halfmann, Janet. Life in a tree. Creative Education, 2001.

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Book chapters on the topic "Eukaryote tree of life"

1

Adhikarla, Vikram. "Tree of Life." In The Art of Theoretical Biology. Springer International Publishing, 2020. http://dx.doi.org/10.1007/978-3-030-33471-0_60.

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2

Degroeve, Sven, Yvan Saeys, Bernard de Baets, Yves Van de Peer, and Pierre Rouzé. "Splice Site Prediction in Eukaryote Genome Sequences." In Cellular Origin and Life in Extreme Habitats and Astrobiology. Springer Netherlands, 2004. http://dx.doi.org/10.1007/978-1-4020-2834-2_8.

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Stephens, G. C. "Regulation of Uptake of Free Amino Acids in Eukaryote Marine Organisms." In Proceedings in Life Sciences. Springer Berlin Heidelberg, 1985. http://dx.doi.org/10.1007/978-3-642-70613-4_24.

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4

Niiyama, Kaoru, and Shin Abe. "Tree Demography Throughout the Tree Life Cycle." In Diversity and Interaction in a Temperate Forest Community. Springer Japan, 2002. http://dx.doi.org/10.1007/978-4-431-67879-3_13.

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Klein, Jan, and Naoyuki Takahata. "The Tree of Life." In Where Do We Come From? Springer Berlin Heidelberg, 2002. http://dx.doi.org/10.1007/978-3-662-04847-4_6.

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Gaia, Morgan, Violette Da Cunha, and Patrick Forterre. "The Tree of Life." In Molecular Mechanisms of Microbial Evolution. Springer International Publishing, 2018. http://dx.doi.org/10.1007/978-3-319-69078-0_3.

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Rohn, Jennifer. "The Tree of Life." In Science Fiction by Scientists. Springer International Publishing, 2016. http://dx.doi.org/10.1007/978-3-319-41102-6_2.

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Simor, Suzanna B. "The Tree of the Credo." In The Origins of Life. Springer Netherlands, 2000. http://dx.doi.org/10.1007/978-94-017-3415-8_4.

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Power, Colin. "Education – The Tree of Life." In The Power of Education. Springer Singapore, 2014. http://dx.doi.org/10.1007/978-981-287-221-0_7.

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Chambon, Michel. "Conclusion: The Tree of Life." In Making Christ Present in China. Springer International Publishing, 2020. http://dx.doi.org/10.1007/978-3-030-55605-1_7.

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Conference papers on the topic "Eukaryote tree of life"

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Patibanda, Rakesh, Florian 'Floyd' Mueller, Matevz Leskovsek, and Jonathan Duckworth. "Life Tree." In CHI PLAY '17: The annual symposium on Computer-Human Interaction in Play. ACM, 2017. http://dx.doi.org/10.1145/3116595.3116621.

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Badger, Jonathan H., and Paul Kearney. "Picking fruit from the tree of life." In the 2001 ACM symposium. ACM Press, 2001. http://dx.doi.org/10.1145/372202.372276.

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Schweimer, G. W. "Tree-Structures and Networks in LCI Mapping Mathematical Solutions." In Total Life Cycle Conference & Exposition. SAE International, 1998. http://dx.doi.org/10.4271/982226.

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Warnow, Tandy. "Computational challenges in constructing the tree of life." In 2017 IEEE International Parallel and Distributed Processing Symposium (IPDPS). IEEE, 2017. http://dx.doi.org/10.1109/ipdps.2017.128.

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Warnow, Tandy. "Genome-scale Estimation of the Tree of Life." In BCB '17: 8th ACM International Conference on Bioinformatics, Computational Biology, and Health Informatics. ACM, 2017. http://dx.doi.org/10.1145/3107411.3107463.

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Feng, Xizhou, Kirk W. Cameron, Carlos P. Sosa, and Brian Smith. "Building the Tree of Life on Terascale Systems." In 2007 IEEE International Parallel and Distributed Processing Symposium. IEEE, 2007. http://dx.doi.org/10.1109/ipdps.2007.370214.

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Zhang, Peng, Houqiang Li, Xiaobo Zhou, Stephen Wong, Tuan D. Pham, and Xiaobo Zhou. "Peak Tree and Peak Detection for Mass Spectrometry Data." In COMPUTATIONAL MODELS FOR LIFE SCIENCES/CMLS '07. AIP, 2007. http://dx.doi.org/10.1063/1.2816616.

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Mostafa-Hassan, M., and J. A. Adedeji. "Numerical Simulation of Pavement Life Deterioration: Tree-Roots’ Effects." In The 5th International Conference on Civil Engineering and Urban Planning (CEUP2016). WORLD SCIENTIFIC, 2017. http://dx.doi.org/10.1142/9789813225237_0051.

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Brake, Sandra, Stephen T. Hasiotis, and Benjamin P. Magnin. "MICROFABRICS OF MACROFABRICS OF BIOLAMINATES PRODUCED BY EUKARYOTE-DOMINATED BIOFILMS FROM AN ACID MINE DRAINAGE SYSTEM: IMPLICATIONS FOR EVIDENCE OF LIFE ON EXTRATERRESTRIAL PLANETARY BODIES." In GSA Annual Meeting in Seattle, Washington, USA - 2017. Geological Society of America, 2017. http://dx.doi.org/10.1130/abs/2017am-302438.

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Weston, James, and Peter Lee. "An Unbounded Parallel Binary Tree Adder for use on a Cellular Platform." In 2007 IEEE Symposium on Artificial Life. IEEE, 2007. http://dx.doi.org/10.1109/alife.2007.367821.

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Reports on the topic "Eukaryote tree of life"

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Nasir, Arshan, Gustavo Caetano-Anolles, and Jean-Michel Claverie. Editorial: Viruses, Genetic Exchange, and the Tree of Life. Office of Scientific and Technical Information (OSTI), 2020. http://dx.doi.org/10.2172/1558035.

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Rajarajan, Kunasekaran, Alka Bharati, Hirdayesh Anuragi, et al. Status of perennial tree germplasm resources in India and their utilization in the context of global genome sequencing efforts. World Agroforestry, 2020. http://dx.doi.org/10.5716/wp20050.pdf.

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Tree species are characterized by their perennial growth habit, woody morphology, long juvenile period phase, mostly outcrossing behaviour, highly heterozygosity genetic makeup, and relatively high genetic diversity. The economically important trees have been an integral part of the human life system due to their provision of timber, fruit, fodder, and medicinal and/or health benefits. Despite its widespread application in agriculture, industrial and medicinal values, the molecular aspects of key economic traits of many tree species remain largely unexplored. Over the past two decades, researc

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Leis, Sherry. Vegetation community monitoring at Lincoln Boyhood National Memorial: 2011–2019. National Park Service, 2021. http://dx.doi.org/10.36967/nrr-2284711.

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Lincoln Boyhood National Memorial celebrates the lives of the Lincoln family including the final resting place of Abraham’s mother, Nancy Hanks Lincoln. Lincoln’s childhood in Indiana was a formative time in the life our 16th president. When the Lincoln family arrived in Indiana, the property was covered in the oak-hickory forest type. They cleared land to create their homestead and farm. Later, designers of the memorial felt that it was important to restore woodlands to the site. The woodlands would help visitors visualize the challenges the Lincoln family faced in establishing and maintainin

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Kuiken, Todd, and Jennifer Kuzma. Genome Editing in Latin America: Regional Regulatory Overview. Inter-American Development Bank, 2021. http://dx.doi.org/10.18235/0003410.

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The power and promise of genome editing, CRISPR specifically, was first realized with the discovery of CRISPR loci in the 1980s.3 Since that time, CRISPR-Cas systems have been further developed enabling genome editing in virtually all organisms across the tree of life.3 In the last few years, we have seen the development of a diverse set of CRISPR-based technologies that has revolutionized genome manipulation.4 Enabling a more diverse set of actors than has been seen with other emerging technologies to redefine research and development for biotechnology products encompassing food, agriculture,

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