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Relevant bibliographies by topics / Eukaryotic gene

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Academic literature on the topic 'Eukaryotic gene'

Author: Grafiati

Published: 4 June 2021

Last updated: 1 February 2022

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Journal articles on the topic "Eukaryotic gene"

1

Hofstatter, Paulo G., Alexander K. Tice, Seungho Kang, Matthew W. Brown, and Daniel J. G. Lahr. "Evolution of bacterial recombinase A ( recA ) in eukaryotes explained by addition of genomic data of key microbial lineages." Proceedings of the Royal Society B: Biological Sciences 283, no. 1840 (2016): 20161453. http://dx.doi.org/10.1098/rspb.2016.1453.

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Recombinase enzymes promote DNA repair by homologous recombination. The genes that encode them are ancestral to life, occurring in all known dominions: viruses, Eubacteria, Archaea and Eukaryota. Bacterial recombinases are also present in viruses and eukaryotic groups (supergroups), presumably via ancestral events of lateral gene transfer. The eukaryotic recA genes have two distinct origins (mitochondrial and plastidial), whose acquisition by eukaryotes was possible via primary (bacteria–eukaryote) and/or secondary (eukaryote–eukaryote) endosymbiotic gene transfers (EGTs). Here we present a co

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Ku, Chuan, Shijulal Nelson-Sathi, Mayo Roettger, Sriram Garg, Einat Hazkani-Covo, and William F. Martin. "Endosymbiotic gene transfer from prokaryotic pangenomes: Inherited chimerism in eukaryotes." Proceedings of the National Academy of Sciences 112, no. 33 (2015): 10139–46. http://dx.doi.org/10.1073/pnas.1421385112.

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Endosymbiotic theory in eukaryotic-cell evolution rests upon a foundation of three cornerstone partners—the plastid (a cyanobacterium), the mitochondrion (a proteobacterium), and its host (an archaeon)—and carries a corollary that, over time, the majority of genes once present in the organelle genomes were relinquished to the chromosomes of the host (endosymbiotic gene transfer). However, notwithstanding eukaryote-specific gene inventions, single-gene phylogenies have never traced eukaryotic genes to three single prokaryotic sources, an issue that hinges crucially upon factors influencing phyl

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Hunter, Gary J. "Eukaryotic gene transcription." Biochemical Education 25, no. 3 (1997): 182. http://dx.doi.org/10.1016/s0307-4412(97)84456-1.

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Chin, Jason W. "Eukaryotic gene regulation." Chemistry & Biology 7, no. 1 (2000): R26. http://dx.doi.org/10.1016/s1074-5521(00)00071-5.

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Garrard, William T. "Eukaryotic gene expression." Trends in Biochemical Sciences 10, no. 2 (1985): 86–87. http://dx.doi.org/10.1016/0968-0004(85)90247-6.

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Ku, Chuan, and Arnau Sebé-Pedrós. "Using single-cell transcriptomics to understand functional states and interactions in microbial eukaryotes." Philosophical Transactions of the Royal Society B: Biological Sciences 374, no. 1786 (2019): 20190098. http://dx.doi.org/10.1098/rstb.2019.0098.

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Understanding the diversity and evolution of eukaryotic microorganisms remains one of the major challenges of modern biology. In recent years, we have advanced in the discovery and phylogenetic placement of new eukaryotic species and lineages, which in turn completely transformed our view on the eukaryotic tree of life. But we remain ignorant of the life cycles, physiology and cellular states of most of these microbial eukaryotes, as well as of their interactions with other organisms. Here, we discuss how high-throughput genome-wide gene expression analysis of eukaryotic single cells can shed

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Brueckner, Julia, and William F. Martin. "Bacterial Genes Outnumber Archaeal Genes in Eukaryotic Genomes." Genome Biology and Evolution 12, no. 4 (2020): 282–92. http://dx.doi.org/10.1093/gbe/evaa047.

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Abstract Eukaryotes are typically depicted as descendants of archaea, but their genomes are evolutionary chimeras with genes stemming from archaea and bacteria. Which prokaryotic heritage predominates? Here, we have clustered 19,050,992 protein sequences from 5,443 bacteria and 212 archaea with 3,420,731 protein sequences from 150 eukaryotes spanning six eukaryotic supergroups. By downsampling, we obtain estimates for the bacterial and archaeal proportions. Eukaryotic genomes possess a bacterial majority of genes. On average, the majority of bacterial genes is 56% overall, 53% in eukaryotes th

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Liapounova, Natalia A., Vladimir Hampl, Paul M. K. Gordon, Christoph W. Sensen, Lashitew Gedamu, and Joel B. Dacks. "Reconstructing the Mosaic Glycolytic Pathway of the Anaerobic Eukaryote Monocercomonoides." Eukaryotic Cell 5, no. 12 (2006): 2138–46. http://dx.doi.org/10.1128/ec.00258-06.

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ABSTRACT All eukaryotes carry out glycolysis, interestingly, not all using the same enzymes. Anaerobic eukaryotes face the challenge of fewer molecules of ATP extracted per molecule of glucose due to their lack of a complete tricarboxylic acid cycle. This may have pressured anaerobic eukaryotes to acquire the more ATP-efficient alternative glycolytic enzymes, such as pyrophosphate-fructose 6-phosphate phosphotransferase and pyruvate orthophosphate dikinase, through lateral gene transfers from bacteria and other eukaryotes. Most studies of these enzymes in eukaryotes involve pathogenic anaerobe

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Whitaker, John W., Glenn A. McConkey, and David R. Westhead. "Prediction of horizontal gene transfers in eukaryotes: approaches and challenges." Biochemical Society Transactions 37, no. 4 (2009): 792–95. http://dx.doi.org/10.1042/bst0370792.

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HGT (horizontal gene transfer) is recognized as an important force in bacterial evolution. Now that many eukaryotic genomes have been sequenced, it has become possible to carry out studies of HGT in eukaryotes. The present review compares the different approaches that exist for identifying HGT genes and assess them in the context of studying eukaryotic evolution. The metabolic evolution resource metaTIGER is then described, with discussion of its application in identification of HGT in eukaryotes.

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Johnson, Kristina M., Katherine Mitsouras, and Michael Carey. "Eukaryotic transcription: The core of eukaryotic gene activation." Current Biology 11, no. 13 (2001): R510—R513. http://dx.doi.org/10.1016/s0960-9822(01)00306-2.

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Dissertations / Theses on the topic "Eukaryotic gene"

1

Kielbasa, Szymon M. "Bioinformatics of eukaryotic gene regulation." [S.l.] : [s.n.], 2006. http://deposit.ddb.de/cgi-bin/dokserv?idn=982693192.

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Marciniak, Jennifer Yuko. "Variability in eukaryotic gene expression /." Diss., Connect to a 24 p. preview or request complete full text in PDF formate. Access restricted to UC campuses, 2005. http://wwwlib.umi.com/cr/ucsd/fullcit?p3208639.

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Kiełbasa, Szymon M. "Bioinformatics of eukaryotic gene regulation." Doctoral thesis, Humboldt-Universität zu Berlin, Mathematisch-Naturwissenschaftliche Fakultät I, 2006. http://dx.doi.org/10.18452/15562.

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Die Aufklärung der Mechanismen zur Kontrolle der Genexpression ist eines der wichtigsten Probleme der modernen Molekularbiologie. Detaillierte experimentelle Untersuchungen sind enorm aufwändig aufgrund der komplexen und kombinatorischen Wechselbeziehungen der beteiligten Moleküle. Infolgedessen sind bioinformatische Methoden unverzichtbar. Diese Dissertation stellt drei Methoden vor, die die Vorhersage der regulatorischen Elementen der Gentranskription verbessern. Der erste Ansatz findet Bindungsstellen, die von den Transkriptionsfaktoren erkannt werden. Dieser sucht statistisch übe

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Tang, Terry, and University of Lethbridge Faculty of Arts and Science. "Mathematical modeling of eukaryotic gene expression." Thesis, Lethbridge, Alta. : University of Lethbridge, Dept. of Chemistry and Biochemistry, 2010, 2010. http://hdl.handle.net/10133/2567.

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Using the Gillespie algorithm, the export of the mRNA molecules from their transcription site to the nuclear pore complex is simulated. The effect of various structures in the nu- cleus on the efficiency of export is discussed. The results show that having some of the space filled by chromatin near the mRNA synthesis site shortens the transport time. Next, the complete eukaryotic gene expression including transcription, splicing, mRNA export, translation, and mRNA degradation is modeled using delay stochastic simulation. This allows for the study of stochastic effects during the process and on

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Benovoy, David. "Ectopic gene conversions in eukaryotic genomes." Thesis, University of Ottawa (Canada), 2006. http://hdl.handle.net/10393/27111.

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We studied ectopic gene conversions, i.e., gene conversions between duplicated genes located at different chromosomal positions, in eukaryotic genomes. In the first part we examined the factors affecting ectopic gene conversions in the human genome and compared their characteristics to those observed in other eukaryotic and prokaryotic species. In the second part, we examined the effect that ectopic conversions have on the GC-content of the duplicated genes found in yeast and Arabidopsis genomes. Using Stanley Sawyer's method implemented in his GENCONV program, we identified and characterized

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Sturm, Richard Alan. "Control mechanisms of higher eukaryotic gene transcription--divergent histone genes /." Title page, contents and abstract only, 1985. http://web4.library.adelaide.edu.au/theses/09PH/09phs936.pdf.

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Abril, Ferrando Josep Francesc. "Comparative analysis of eukaryotic gene sequence features." Doctoral thesis, Universitat Pompeu Fabra, 2005. http://hdl.handle.net/10803/7108.

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L'incessant augment del nombre de seqüències genòmiques, juntament amb <br/>l'increment del nombre de tècniques experimentals de les que es disposa, <br/>permetrà obtenir el catàleg complet de les funcions cel.lulars de <br/>diferents organismes, incloent-hi la nostra espècie. Aquest catàleg <br/>definirà els fonaments sobre els que es podrà entendre millor com els <br/>organismes funcionen a nivell molecular. Al mateix temps es tindran més <br/>pistes sobre els canvis que estan associats amb les malalties. Per tant, <br/>la seqüència en brut, tal i com s'obté dels projectes de seqüenciació de

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Dickinson, P. "Fibronectin gene expression in higher eukaryotic cells." Thesis, University of Manchester, 1987. http://ethos.bl.uk/OrderDetails.do?uin=uk.bl.ethos.378322.

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Ouma, Zachary Wilberforce. "Topological Properties of Eukaryotic Gene Regulatory Networks." The Ohio State University, 2017. http://rave.ohiolink.edu/etdc/view?acc_num=osu1512041623395438.

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Clark, Francis. "A computational study of gene structure and splicing in model eukaryote organisms /." St. Lucia, Qld, 2003. http://www.library.uq.edu.au/pdfserve.php?image=thesisabs/absthe17395.pdf.

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Books on the topic "Eukaryotic gene"

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Gene regulation: A eukaryotic perspective. 2nd ed. Chapman & Hall, 1995.

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Gene regulation: A eukaryotic perspective. 5th ed. Taylor & Francis, 2006.

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Latchman, David S. Gene regulation: A eukaryotic perspective. Unwin Hyman, 1990.

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Gene regulation: A eukaryotic perspective. 4th ed. Nelson Thornes, 2002.

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Privalsky, Martin L., ed. Transcriptional Corepressors: Mediators of Eukaryotic Gene Repression. Springer Berlin Heidelberg, 2001. http://dx.doi.org/10.1007/978-3-662-10595-5.

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Wingender, Edgar. Gene regulation in eukaryotes. VCH, 1993.

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Wajapeyee, Narendra, and Romi Gupta, eds. Eukaryotic Transcriptional and Post-Transcriptional Gene Expression Regulation. Springer New York, 2017. http://dx.doi.org/10.1007/978-1-4939-6518-2.

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Barrett, Lucy W. Untranslated gene regions and other non-coding elements: Regulation of eukaryotic gene expression. Springer, 2013.

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J, Kingsman A., ed. Genetic engineering: An introduction to gene analysis and exploitation in eukaryotes. Blackwell Scientific Publications, 1988.

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A, Broda P. M., Oliver S. G. 1949-, and Sims P, eds. The eukaryotic genome: Organisation and regulation. Cambridge University Press, 1993.

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Book chapters on the topic "Eukaryotic gene"

1

Gromek, Jennifer H., and Arik Dvir. "Eukaryotic Gene Transcription." In Signal Transduction: Pathways, Mechanisms and Diseases. Springer Berlin Heidelberg, 2009. http://dx.doi.org/10.1007/978-3-642-02112-1_14.

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Kriegler, Michael. "Eukaryotic Control Elements." In Gene Transfer and Expression. Palgrave Macmillan UK, 1990. http://dx.doi.org/10.1007/978-1-349-11891-5_1.

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Weber, Martin. "Gene Transfer into Eukaryotic Cells." In Manufacturing of Gene Therapeutics. Springer US, 2002. http://dx.doi.org/10.1007/978-1-4615-1353-7_7.

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Gupta, Naba K., Mir F. Ahmad, Debopam Chakrabarti, and Nargis Nasrin. "Roles of Eukaryotic Initiation Factor 2 and Eukaryotic Initiation Factor 2 Ancillary Protein Factors in Eukaryotic Protein Synthesis Initiation." In Translational Regulation of Gene Expression. Springer US, 1987. http://dx.doi.org/10.1007/978-1-4684-5365-2_14.

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Gehrke, Lee. "Differential Translation of Eukaryotic Messenger RNAs." In Translational Regulation of Gene Expression. Springer US, 1987. http://dx.doi.org/10.1007/978-1-4684-5365-2_16.

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Solovyev, V. "Statistical Approaches in Eukaryotic Gene Prediction." In Handbook of Statistical Genetics. John Wiley & Sons, Ltd, 2008. http://dx.doi.org/10.1002/9780470061619.ch4.

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Stanke, Mario. "Computational Gene Prediction in Eukaryotic Genomes." In Cellular Origin, Life in Extreme Habitats and Astrobiology. Springer Netherlands, 2010. http://dx.doi.org/10.1007/978-90-481-3795-4_16.

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Wasylyk, B. "Promoter Elements of Eukaryotic Protein-Coding Genes." In Chromosomal Proteins and Gene Expression. Springer US, 1985. http://dx.doi.org/10.1007/978-1-4684-7615-6_7.

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Durairaj, Geetha, Shivani Malik, and Sukesh R. Bhaumik. "Eukaryotic Gene Expression by RNA Polymerase II." In Gene Regulation, Epigenetics and Hormone Signaling. Wiley-VCH Verlag GmbH & Co. KGaA, 2017. http://dx.doi.org/10.1002/9783527697274.ch1.

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Walthers, Don, Alvin Go, and Linda J. Kenney. "Regulation of Porin Gene Expression by the Two-Component Regulatory System EnvZ/OmpR." In Bacterial and Eukaryotic Porins. Wiley-VCH Verlag GmbH & Co. KGaA, 2005. http://dx.doi.org/10.1002/3527603875.ch1.

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Conference papers on the topic "Eukaryotic gene"

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Hasty, Jeff. "Origins of extrinsic variability in eukaryotic gene expression." In 2006 Bio Micro and Nanosystems Conference. IEEE, 2006. http://dx.doi.org/10.1109/bmn.2006.330878.

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Akhtar, Mahmood, Eliathamby Ambikairajah, and Julien Epps. "Optimizing period-3 methods for eukaryotic gene prediction." In ICASSP 2008 - 2008 IEEE International Conference on Acoustics, Speech and Signal Processing. IEEE, 2008. http://dx.doi.org/10.1109/icassp.2008.4517686.

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Wu, Shinq-Jen, Cheng-Tao Wu, and Tsu-Tian Lee. "Computation Intelligent for Eukaryotic Cell-Cycle Gene Network." In Conference Proceedings. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE, 2006. http://dx.doi.org/10.1109/iembs.2006.260339.

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Wu, Shinq-Jen, Cheng-Tao Wu, and Tsu-Tian Lee. "Computation Intelligent for Eukaryotic Cell-Cycle Gene Network." In Conference Proceedings. Annual International Conference of the IEEE Engineering in Medicine and Biology Society. IEEE, 2006. http://dx.doi.org/10.1109/iembs.2006.4397830.

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Eftestol, T., T. Ryen, S. O. Aase, et al. "Eukaryotic Gene Prediction by Spectral Analysis and Pattern Recognition Techniques." In Proceedings of the 7th Nordic Signal Processing Symposium - NORSIG 2006. IEEE, 2006. http://dx.doi.org/10.1109/norsig.2006.275214.

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Gao, Meijun, and Kevin J. Liu. "Statistical analysis of GC-biased gene conversion and recombination hotspots in eukaryotic genomes." In BCB '21: 12th ACM International Conference on Bioinformatics, Computational Biology and Health Informatics. ACM, 2021. http://dx.doi.org/10.1145/3459930.3469509.

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Tinghong Zhang, Zhenjie Zhang, Xie Zhao, and Weishan Chang. "Eukaryotic expression of Porcine BST-2 gene and identification of biological activity of BST-2." In 2011 International Conference on Remote Sensing, Environment and Transportation Engineering (RSETE). IEEE, 2011. http://dx.doi.org/10.1109/rsete.2011.5966124.

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Pannekok, H., A. J. Van Zonneveid, C. J. M. de vries, M. E. MacDonald, H. Veerman, and F. Blasi. "FUNCTIONAL PROPERTIES OF DELETION-MUTANTS OF TISSUE-TYPE PLASMINOGEN ACTIVATOR." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1643724.

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Over the past twenty-five years, genetic methods have generated a wealth of information on the regulation and the structure-function relationship of bacterial genes.These methods are based on the introduction of random mutations in a gene to alter its function. Subsequently, genetic techniques cure applied to localize the mutation, while the nature of the impairedfunction could be determined using biochemical methods. Classic examples of this approach is now considered to be the elucidation of the structure and function of genes, constituting the Escherichia coli lactose (lac) and tryptophan (

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Mochalova, E. N. "Rational Design of Nanoparticle-Based Agents for Effective Targeted Drug and Gene Delivery to Eukaryotic Cells." In 2020 International Conference Laser Optics (ICLO). IEEE, 2020. http://dx.doi.org/10.1109/iclo48556.2020.9285548.

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Hassan, H. J., L. Cianetti, P. M. Mannucci, V. Vicente, R. Cortese, and C. Peschle. "HEREDITARY THROMBOPHILIA CAUSED BY MISSENSE MUTATION IN PROTEIN C GENE." In XIth International Congress on Thrombosis and Haemostasis. Schattauer GmbH, 1987. http://dx.doi.org/10.1055/s-0038-1642944.

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The structure of the gene for protein C was analyzed in 13 protein C deficient unrelated patients (11 heterozygous, 2 homozygous), who showed an equivalent reduction of this serine protease at both enzymatic and antigen level. No deletion(s) or rearrangement(s) was demonstrated by Southern blot after hybridization to a cDNA probe. One patient showed a variant restriction pattern after Bam HI digestion, characterized by an abnormal 9.6 kb band in addition to the 8.3 and 1.3 normal ones. Extensive family studies, including 7 heterozygotes with the same clinical phenotype, showed the same abnorma

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Reports on the topic "Eukaryotic gene"

1

Lee, Andrew Loyd. Structural and dynamic characterization of eukaryotic gene regulatory protein domains in solution. Office of Scientific and Technical Information (OSTI), 1996. http://dx.doi.org/10.2172/373861.

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